Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04740 and HMPREF1058_RS04735 are separated by 66 nucleotides HMPREF1058_RS04735 and HMPREF1058_RS04730 overlap by 8 nucleotides HMPREF1058_RS04730 and HMPREF1058_RS04725 are separated by 13 nucleotides HMPREF1058_RS04725 and HMPREF1058_RS04720 are separated by 56 nucleotides
HMPREF1058_RS04740: HMPREF1058_RS04740 - DUF5606 domain-containing protein, at 325,334 to 325,774
_RS04740
HMPREF1058_RS04735: HMPREF1058_RS04735 - dephospho-CoA kinase, at 325,841 to 326,437
_RS04735
HMPREF1058_RS04730: HMPREF1058_RS04730 - YbbR-like domain-containing protein, at 326,430 to 327,443
_RS04730
HMPREF1058_RS04725: HMPREF1058_RS04725 - preprotein translocase subunit YajC, at 327,457 to 327,771
_RS04725
HMPREF1058_RS04720: HMPREF1058_RS04720 - transcription antitermination factor NusB, at 327,828 to 328,754
_RS04720
Position (kb) 326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 325.473 kb on + strand, within HMPREF1058_RS04740 at 325.473 kb on + strand, within HMPREF1058_RS04740 at 325.498 kb on - strand, within HMPREF1058_RS04740 at 325.498 kb on - strand, within HMPREF1058_RS04740 at 325.529 kb on - strand, within HMPREF1058_RS04740 at 325.530 kb on + strand, within HMPREF1058_RS04740 at 325.614 kb on + strand, within HMPREF1058_RS04740 at 325.614 kb on + strand, within HMPREF1058_RS04740 at 325.615 kb on - strand, within HMPREF1058_RS04740 at 325.619 kb on - strand, within HMPREF1058_RS04740 at 325.619 kb on - strand, within HMPREF1058_RS04740 at 325.732 kb on - strand at 325.732 kb on - strand at 325.733 kb on + strand at 325.774 kb on + strand at 325.777 kb on + strand at 325.787 kb on + strand at 325.788 kb on - strand at 325.875 kb on - strand at 325.875 kb on - strand at 326.727 kb on - strand, within HMPREF1058_RS04730 at 326.779 kb on - strand, within HMPREF1058_RS04730 at 326.844 kb on - strand, within HMPREF1058_RS04730 at 326.885 kb on - strand, within HMPREF1058_RS04730 at 326.925 kb on - strand, within HMPREF1058_RS04730 at 326.925 kb on - strand, within HMPREF1058_RS04730 at 326.930 kb on - strand, within HMPREF1058_RS04730 at 327.116 kb on - strand, within HMPREF1058_RS04730 at 327.164 kb on - strand, within HMPREF1058_RS04730 at 327.287 kb on - strand, within HMPREF1058_RS04730 at 327.413 kb on - strand at 327.416 kb on - strand at 327.416 kb on - strand at 327.416 kb on - strand at 327.420 kb on - strand at 327.424 kb on - strand at 327.788 kb on - strand at 327.793 kb on - strand at 327.793 kb on - strand at 327.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 325,473 + HMPREF1058_RS04740 0.32 +0.9 325,473 + HMPREF1058_RS04740 0.32 +1.5 325,498 - HMPREF1058_RS04740 0.37 +0.1 325,498 - HMPREF1058_RS04740 0.37 +0.6 325,529 - HMPREF1058_RS04740 0.44 +1.5 325,530 + HMPREF1058_RS04740 0.44 +0.5 325,614 + HMPREF1058_RS04740 0.63 -1.4 325,614 + HMPREF1058_RS04740 0.63 -0.6 325,615 - HMPREF1058_RS04740 0.64 -0.4 325,619 - HMPREF1058_RS04740 0.65 -1.7 325,619 - HMPREF1058_RS04740 0.65 -0.1 325,732 - -0.7 325,732 - +0.1 325,733 + -2.2 325,774 + -3.0 325,777 + -0.1 325,787 + +0.3 325,788 - -0.1 325,875 - -0.1 325,875 - -1.5 326,727 - HMPREF1058_RS04730 0.29 -2.5 326,779 - HMPREF1058_RS04730 0.34 -2.2 326,844 - HMPREF1058_RS04730 0.41 -0.7 326,885 - HMPREF1058_RS04730 0.45 -2.0 326,925 - HMPREF1058_RS04730 0.49 -3.0 326,925 - HMPREF1058_RS04730 0.49 -1.2 326,930 - HMPREF1058_RS04730 0.49 -1.9 327,116 - HMPREF1058_RS04730 0.68 -0.5 327,164 - HMPREF1058_RS04730 0.72 -2.9 327,287 - HMPREF1058_RS04730 0.85 -0.5 327,413 - -0.1 327,416 - -3.4 327,416 - -0.9 327,416 - -1.9 327,420 - -1.8 327,424 - -0.3 327,788 - -0.8 327,793 - +2.2 327,793 - -0.3 327,795 - +0.4
Or see this region's nucleotide sequence