Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04305 and HMPREF1058_RS04300 are separated by 254 nucleotides HMPREF1058_RS04300 and HMPREF1058_RS04295 are separated by 107 nucleotides
HMPREF1058_RS04305: HMPREF1058_RS04305 - DEAD/DEAH box helicase, at 69,359 to 70,678
_RS04305
HMPREF1058_RS04300: HMPREF1058_RS04300 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 70,933 to 72,003
_RS04300
HMPREF1058_RS04295: HMPREF1058_RS04295 - 3-phosphoglycerate dehydrogenase, at 72,111 to 73,031
_RS04295
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 69.977 kb on + strand, within HMPREF1058_RS04305 at 69.978 kb on - strand, within HMPREF1058_RS04305 at 69.985 kb on - strand, within HMPREF1058_RS04305 at 70.021 kb on + strand, within HMPREF1058_RS04305 at 70.178 kb on - strand, within HMPREF1058_RS04305 at 70.263 kb on + strand, within HMPREF1058_RS04305 at 70.382 kb on + strand, within HMPREF1058_RS04305 at 70.383 kb on - strand, within HMPREF1058_RS04305 at 70.385 kb on - strand, within HMPREF1058_RS04305 at 70.458 kb on + strand, within HMPREF1058_RS04305 at 70.458 kb on + strand, within HMPREF1058_RS04305 at 70.459 kb on - strand, within HMPREF1058_RS04305 at 70.460 kb on + strand, within HMPREF1058_RS04305 at 70.895 kb on - strand at 70.912 kb on + strand at 70.965 kb on + strand at 70.965 kb on + strand at 71.079 kb on - strand, within HMPREF1058_RS04300 at 71.138 kb on + strand, within HMPREF1058_RS04300 at 71.172 kb on + strand, within HMPREF1058_RS04300 at 71.173 kb on - strand, within HMPREF1058_RS04300 at 71.177 kb on + strand, within HMPREF1058_RS04300 at 71.177 kb on + strand, within HMPREF1058_RS04300 at 71.178 kb on - strand, within HMPREF1058_RS04300 at 71.302 kb on + strand, within HMPREF1058_RS04300 at 71.302 kb on + strand, within HMPREF1058_RS04300 at 71.303 kb on - strand, within HMPREF1058_RS04300 at 71.305 kb on - strand, within HMPREF1058_RS04300 at 71.430 kb on + strand, within HMPREF1058_RS04300 at 71.475 kb on + strand, within HMPREF1058_RS04300 at 71.481 kb on + strand at 71.676 kb on - strand, within HMPREF1058_RS04300 at 71.737 kb on + strand, within HMPREF1058_RS04300 at 71.834 kb on - strand, within HMPREF1058_RS04300 at 71.880 kb on + strand, within HMPREF1058_RS04300 at 71.940 kb on + strand at 72.004 kb on + strand at 72.005 kb on - strand at 72.008 kb on + strand at 72.158 kb on - strand at 72.158 kb on - strand at 72.217 kb on - strand, within HMPREF1058_RS04295 at 72.235 kb on + strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.281 kb on + strand, within HMPREF1058_RS04295 at 72.331 kb on + strand, within HMPREF1058_RS04295 at 72.332 kb on - strand, within HMPREF1058_RS04295 at 72.581 kb on + strand, within HMPREF1058_RS04295 at 72.664 kb on - strand at 72.678 kb on - strand, within HMPREF1058_RS04295 at 72.729 kb on + strand, within HMPREF1058_RS04295 at 72.763 kb on + strand, within HMPREF1058_RS04295 at 72.838 kb on + strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 69,977 + HMPREF1058_RS04305 0.47 -0.2 69,978 - HMPREF1058_RS04305 0.47 +0.4 69,985 - HMPREF1058_RS04305 0.47 +0.8 70,021 + HMPREF1058_RS04305 0.50 -2.8 70,178 - HMPREF1058_RS04305 0.62 +0.1 70,263 + HMPREF1058_RS04305 0.68 -1.2 70,382 + HMPREF1058_RS04305 0.78 -1.4 70,383 - HMPREF1058_RS04305 0.78 -1.4 70,385 - HMPREF1058_RS04305 0.78 -0.8 70,458 + HMPREF1058_RS04305 0.83 +1.8 70,458 + HMPREF1058_RS04305 0.83 +0.1 70,459 - HMPREF1058_RS04305 0.83 +2.5 70,460 + HMPREF1058_RS04305 0.83 -0.2 70,895 - -1.3 70,912 + -1.0 70,965 + -3.8 70,965 + -1.4 71,079 - HMPREF1058_RS04300 0.14 -0.8 71,138 + HMPREF1058_RS04300 0.19 -3.3 71,172 + HMPREF1058_RS04300 0.22 -2.7 71,173 - HMPREF1058_RS04300 0.22 -2.4 71,177 + HMPREF1058_RS04300 0.23 -1.6 71,177 + HMPREF1058_RS04300 0.23 -1.1 71,178 - HMPREF1058_RS04300 0.23 -2.2 71,302 + HMPREF1058_RS04300 0.34 -1.9 71,302 + HMPREF1058_RS04300 0.34 -3.2 71,303 - HMPREF1058_RS04300 0.35 -1.6 71,305 - HMPREF1058_RS04300 0.35 -2.4 71,430 + HMPREF1058_RS04300 0.46 -1.3 71,475 + HMPREF1058_RS04300 0.51 -1.3 71,481 + -1.2 71,676 - HMPREF1058_RS04300 0.69 -0.2 71,737 + HMPREF1058_RS04300 0.75 -3.3 71,834 - HMPREF1058_RS04300 0.84 -1.1 71,880 + HMPREF1058_RS04300 0.88 -2.1 71,940 + -0.3 72,004 + -2.3 72,005 - -1.6 72,008 + +2.4 72,158 - -0.6 72,158 - -0.6 72,217 - HMPREF1058_RS04295 0.12 -1.1 72,235 + HMPREF1058_RS04295 0.13 -4.1 72,236 - HMPREF1058_RS04295 0.14 -4.4 72,236 - HMPREF1058_RS04295 0.14 +0.8 72,281 + HMPREF1058_RS04295 0.18 -1.3 72,331 + HMPREF1058_RS04295 0.24 -2.0 72,332 - HMPREF1058_RS04295 0.24 -0.8 72,581 + HMPREF1058_RS04295 0.51 -2.6 72,664 - -0.4 72,678 - HMPREF1058_RS04295 0.62 -1.6 72,729 + HMPREF1058_RS04295 0.67 -3.2 72,763 + HMPREF1058_RS04295 0.71 -2.3 72,838 + HMPREF1058_RS04295 0.79 +2.4 72,844 - HMPREF1058_RS04295 0.80 +0.5 72,844 - HMPREF1058_RS04295 0.80 -0.1
Or see this region's nucleotide sequence