Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04185 and HMPREF1058_RS04180 are separated by 273 nucleotides HMPREF1058_RS04180 and HMPREF1058_RS04175 are separated by 13 nucleotides
HMPREF1058_RS04185: HMPREF1058_RS04185 - hypothetical protein, at 98,931 to 99,632
_RS04185
HMPREF1058_RS04180: HMPREF1058_RS04180 - K(+)-transporting ATPase subunit C, at 99,906 to 100,475
_RS04180
HMPREF1058_RS04175: HMPREF1058_RS04175 - potassium-transporting ATPase subunit KdpB, at 100,489 to 102,522
_RS04175
Position (kb) 99
100
101 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 98.998 kb on - strand at 99.089 kb on - strand, within HMPREF1058_RS04185 at 99.089 kb on - strand, within HMPREF1058_RS04185 at 99.156 kb on - strand, within HMPREF1058_RS04185 at 99.157 kb on + strand, within HMPREF1058_RS04185 at 99.157 kb on + strand, within HMPREF1058_RS04185 at 99.170 kb on + strand, within HMPREF1058_RS04185 at 99.171 kb on - strand, within HMPREF1058_RS04185 at 99.173 kb on - strand, within HMPREF1058_RS04185 at 99.204 kb on - strand, within HMPREF1058_RS04185 at 99.227 kb on + strand at 99.268 kb on + strand, within HMPREF1058_RS04185 at 99.302 kb on + strand, within HMPREF1058_RS04185 at 99.302 kb on + strand, within HMPREF1058_RS04185 at 99.303 kb on - strand, within HMPREF1058_RS04185 at 99.354 kb on - strand, within HMPREF1058_RS04185 at 99.357 kb on - strand, within HMPREF1058_RS04185 at 99.375 kb on - strand, within HMPREF1058_RS04185 at 99.375 kb on - strand, within HMPREF1058_RS04185 at 99.377 kb on - strand, within HMPREF1058_RS04185 at 99.476 kb on + strand, within HMPREF1058_RS04185 at 99.476 kb on + strand, within HMPREF1058_RS04185 at 99.670 kb on + strand at 99.670 kb on + strand at 99.802 kb on - strand at 99.886 kb on + strand at 99.893 kb on + strand at 99.896 kb on - strand at 100.005 kb on - strand, within HMPREF1058_RS04180 at 100.169 kb on + strand, within HMPREF1058_RS04180 at 100.198 kb on + strand, within HMPREF1058_RS04180 at 100.221 kb on - strand, within HMPREF1058_RS04180 at 100.221 kb on - strand, within HMPREF1058_RS04180 at 100.290 kb on - strand, within HMPREF1058_RS04180 at 100.326 kb on + strand, within HMPREF1058_RS04180 at 100.404 kb on + strand, within HMPREF1058_RS04180 at 100.405 kb on - strand, within HMPREF1058_RS04180 at 100.409 kb on + strand at 100.411 kb on + strand, within HMPREF1058_RS04180 at 100.411 kb on + strand, within HMPREF1058_RS04180 at 100.412 kb on - strand, within HMPREF1058_RS04180 at 100.412 kb on - strand, within HMPREF1058_RS04180 at 100.416 kb on + strand, within HMPREF1058_RS04180 at 100.491 kb on - strand at 100.504 kb on + strand at 100.505 kb on - strand at 100.510 kb on + strand at 100.545 kb on + strand at 100.555 kb on + strand at 100.556 kb on - strand at 100.565 kb on - strand at 100.645 kb on - strand at 100.683 kb on + strand at 100.714 kb on - strand, within HMPREF1058_RS04175 at 100.813 kb on - strand at 101.027 kb on + strand, within HMPREF1058_RS04175 at 101.027 kb on + strand, within HMPREF1058_RS04175 at 101.028 kb on - strand, within HMPREF1058_RS04175 at 101.028 kb on - strand, within HMPREF1058_RS04175 at 101.028 kb on - strand, within HMPREF1058_RS04175 at 101.071 kb on + strand, within HMPREF1058_RS04175 at 101.092 kb on - strand, within HMPREF1058_RS04175 at 101.093 kb on + strand, within HMPREF1058_RS04175 at 101.093 kb on + strand, within HMPREF1058_RS04175 at 101.094 kb on - strand, within HMPREF1058_RS04175 at 101.377 kb on - strand, within HMPREF1058_RS04175 at 101.415 kb on + strand, within HMPREF1058_RS04175 at 101.415 kb on + strand, within HMPREF1058_RS04175 at 101.416 kb on - strand, within HMPREF1058_RS04175 at 101.440 kb on - strand, within HMPREF1058_RS04175
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 98,998 - -0.3 99,089 - HMPREF1058_RS04185 0.23 -0.8 99,089 - HMPREF1058_RS04185 0.23 +0.3 99,156 - HMPREF1058_RS04185 0.32 -1.4 99,157 + HMPREF1058_RS04185 0.32 -0.5 99,157 + HMPREF1058_RS04185 0.32 +0.2 99,170 + HMPREF1058_RS04185 0.34 +0.1 99,171 - HMPREF1058_RS04185 0.34 -1.0 99,173 - HMPREF1058_RS04185 0.34 -2.6 99,204 - HMPREF1058_RS04185 0.39 +0.8 99,227 + -0.9 99,268 + HMPREF1058_RS04185 0.48 +1.0 99,302 + HMPREF1058_RS04185 0.53 +2.0 99,302 + HMPREF1058_RS04185 0.53 +0.1 99,303 - HMPREF1058_RS04185 0.53 +0.1 99,354 - HMPREF1058_RS04185 0.60 +1.0 99,357 - HMPREF1058_RS04185 0.61 +0.2 99,375 - HMPREF1058_RS04185 0.63 +0.4 99,375 - HMPREF1058_RS04185 0.63 +0.5 99,377 - HMPREF1058_RS04185 0.64 +0.3 99,476 + HMPREF1058_RS04185 0.78 +2.6 99,476 + HMPREF1058_RS04185 0.78 -1.4 99,670 + -1.9 99,670 + +1.0 99,802 - -0.7 99,886 + -0.6 99,893 + -0.5 99,896 - -0.3 100,005 - HMPREF1058_RS04180 0.17 -2.4 100,169 + HMPREF1058_RS04180 0.46 -2.6 100,198 + HMPREF1058_RS04180 0.51 -0.2 100,221 - HMPREF1058_RS04180 0.55 -3.0 100,221 - HMPREF1058_RS04180 0.55 -1.6 100,290 - HMPREF1058_RS04180 0.67 -1.9 100,326 + HMPREF1058_RS04180 0.74 -2.1 100,404 + HMPREF1058_RS04180 0.87 +2.0 100,405 - HMPREF1058_RS04180 0.88 -1.7 100,409 + -0.2 100,411 + HMPREF1058_RS04180 0.89 +2.4 100,411 + HMPREF1058_RS04180 0.89 -3.8 100,412 - HMPREF1058_RS04180 0.89 -1.6 100,412 - HMPREF1058_RS04180 0.89 -0.4 100,416 + HMPREF1058_RS04180 0.89 -1.5 100,491 - -1.2 100,504 + +0.2 100,505 - -0.8 100,510 + -1.9 100,545 + -4.0 100,555 + -1.5 100,556 - -2.8 100,565 - -0.3 100,645 - -0.5 100,683 + -0.2 100,714 - HMPREF1058_RS04175 0.11 -0.1 100,813 - +0.6 101,027 + HMPREF1058_RS04175 0.26 -2.8 101,027 + HMPREF1058_RS04175 0.26 -1.5 101,028 - HMPREF1058_RS04175 0.26 -2.3 101,028 - HMPREF1058_RS04175 0.26 -4.0 101,028 - HMPREF1058_RS04175 0.26 +0.6 101,071 + HMPREF1058_RS04175 0.29 -2.0 101,092 - HMPREF1058_RS04175 0.30 -0.4 101,093 + HMPREF1058_RS04175 0.30 -3.5 101,093 + HMPREF1058_RS04175 0.30 -1.9 101,094 - HMPREF1058_RS04175 0.30 -1.8 101,377 - HMPREF1058_RS04175 0.44 -2.7 101,415 + HMPREF1058_RS04175 0.46 -2.6 101,415 + HMPREF1058_RS04175 0.46 -2.2 101,416 - HMPREF1058_RS04175 0.46 -1.7 101,440 - HMPREF1058_RS04175 0.47 -2.7
Or see this region's nucleotide sequence