Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04175

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04185 and HMPREF1058_RS04180 are separated by 273 nucleotidesHMPREF1058_RS04180 and HMPREF1058_RS04175 are separated by 13 nucleotidesHMPREF1058_RS04175 and HMPREF1058_RS04170 are separated by 33 nucleotides HMPREF1058_RS04185: HMPREF1058_RS04185 - hypothetical protein, at 98,931 to 99,632 _RS04185 HMPREF1058_RS04180: HMPREF1058_RS04180 - K(+)-transporting ATPase subunit C, at 99,906 to 100,475 _RS04180 HMPREF1058_RS04175: HMPREF1058_RS04175 - potassium-transporting ATPase subunit KdpB, at 100,489 to 102,522 _RS04175 HMPREF1058_RS04170: HMPREF1058_RS04170 - potassium-transporting ATPase subunit KdpA, at 102,556 to 104,262 _RS04170 Position (kb) 100 101 102 103Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 99.670 kb on + strandat 99.670 kb on + strandat 99.802 kb on - strandat 99.886 kb on + strandat 99.893 kb on + strandat 99.896 kb on - strandat 100.005 kb on - strand, within HMPREF1058_RS04180at 100.169 kb on + strand, within HMPREF1058_RS04180at 100.198 kb on + strand, within HMPREF1058_RS04180at 100.221 kb on - strand, within HMPREF1058_RS04180at 100.221 kb on - strand, within HMPREF1058_RS04180at 100.290 kb on - strand, within HMPREF1058_RS04180at 100.326 kb on + strand, within HMPREF1058_RS04180at 100.404 kb on + strand, within HMPREF1058_RS04180at 100.405 kb on - strand, within HMPREF1058_RS04180at 100.409 kb on + strandat 100.411 kb on + strand, within HMPREF1058_RS04180at 100.411 kb on + strand, within HMPREF1058_RS04180at 100.412 kb on - strand, within HMPREF1058_RS04180at 100.412 kb on - strand, within HMPREF1058_RS04180at 100.416 kb on + strand, within HMPREF1058_RS04180at 100.491 kb on - strandat 100.504 kb on + strandat 100.505 kb on - strandat 100.510 kb on + strandat 100.545 kb on + strandat 100.555 kb on + strandat 100.556 kb on - strandat 100.565 kb on - strandat 100.645 kb on - strandat 100.683 kb on + strandat 100.714 kb on - strand, within HMPREF1058_RS04175at 100.813 kb on - strandat 101.027 kb on + strand, within HMPREF1058_RS04175at 101.027 kb on + strand, within HMPREF1058_RS04175at 101.028 kb on - strand, within HMPREF1058_RS04175at 101.028 kb on - strand, within HMPREF1058_RS04175at 101.028 kb on - strand, within HMPREF1058_RS04175at 101.071 kb on + strand, within HMPREF1058_RS04175at 101.092 kb on - strand, within HMPREF1058_RS04175at 101.093 kb on + strand, within HMPREF1058_RS04175at 101.093 kb on + strand, within HMPREF1058_RS04175at 101.094 kb on - strand, within HMPREF1058_RS04175at 101.377 kb on - strand, within HMPREF1058_RS04175at 101.415 kb on + strand, within HMPREF1058_RS04175at 101.415 kb on + strand, within HMPREF1058_RS04175at 101.416 kb on - strand, within HMPREF1058_RS04175at 101.440 kb on - strand, within HMPREF1058_RS04175at 101.507 kb on - strand, within HMPREF1058_RS04175at 101.590 kb on + strand, within HMPREF1058_RS04175at 101.629 kb on + strand, within HMPREF1058_RS04175at 101.630 kb on - strand, within HMPREF1058_RS04175at 101.632 kb on - strand, within HMPREF1058_RS04175at 101.733 kb on + strand, within HMPREF1058_RS04175at 101.796 kb on + strand, within HMPREF1058_RS04175at 101.814 kb on + strand, within HMPREF1058_RS04175at 101.824 kb on - strand, within HMPREF1058_RS04175at 101.959 kb on + strand, within HMPREF1058_RS04175at 102.115 kb on + strand, within HMPREF1058_RS04175at 102.165 kb on + strand, within HMPREF1058_RS04175at 102.333 kb on + strandat 102.334 kb on - strandat 102.387 kb on + strandat 102.387 kb on + strandat 102.414 kb on + strandat 102.415 kb on - strandat 102.523 kb on - strandat 102.532 kb on + strandat 102.610 kb on + strandat 102.854 kb on + strand, within HMPREF1058_RS04170at 102.970 kb on + strandat 102.991 kb on + strand, within HMPREF1058_RS04170at 103.036 kb on - strand, within HMPREF1058_RS04170at 103.095 kb on + strand, within HMPREF1058_RS04170at 103.098 kb on + strand, within HMPREF1058_RS04170at 103.099 kb on - strand, within HMPREF1058_RS04170at 103.104 kb on + strand, within HMPREF1058_RS04170at 103.104 kb on + strand, within HMPREF1058_RS04170at 103.105 kb on - strand, within HMPREF1058_RS04170at 103.129 kb on + strand, within HMPREF1058_RS04170at 103.130 kb on - strand, within HMPREF1058_RS04170at 103.206 kb on + strand, within HMPREF1058_RS04170at 103.230 kb on + strand, within HMPREF1058_RS04170at 103.236 kb on + strand, within HMPREF1058_RS04170at 103.239 kb on + strand, within HMPREF1058_RS04170at 103.240 kb on - strand, within HMPREF1058_RS04170at 103.246 kb on - strand, within HMPREF1058_RS04170at 103.316 kb on - strand, within HMPREF1058_RS04170at 103.368 kb on + strand, within HMPREF1058_RS04170at 103.414 kb on - strand, within HMPREF1058_RS04170at 103.471 kb on + strand, within HMPREF1058_RS04170at 103.511 kb on + strand, within HMPREF1058_RS04170

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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99,670 + -1.9
99,670 + +1.0
99,802 - -0.7
99,886 + -0.6
99,893 + -0.5
99,896 - -0.3
100,005 - HMPREF1058_RS04180 0.17 -2.4
100,169 + HMPREF1058_RS04180 0.46 -2.6
100,198 + HMPREF1058_RS04180 0.51 -0.2
100,221 - HMPREF1058_RS04180 0.55 -3.0
100,221 - HMPREF1058_RS04180 0.55 -1.6
100,290 - HMPREF1058_RS04180 0.67 -1.9
100,326 + HMPREF1058_RS04180 0.74 -2.1
100,404 + HMPREF1058_RS04180 0.87 +2.0
100,405 - HMPREF1058_RS04180 0.88 -1.7
100,409 + -0.2
100,411 + HMPREF1058_RS04180 0.89 +2.4
100,411 + HMPREF1058_RS04180 0.89 -3.8
100,412 - HMPREF1058_RS04180 0.89 -1.6
100,412 - HMPREF1058_RS04180 0.89 -0.4
100,416 + HMPREF1058_RS04180 0.89 -1.5
100,491 - -1.2
100,504 + +0.2
100,505 - -0.8
100,510 + -1.9
100,545 + -4.0
100,555 + -1.5
100,556 - -2.8
100,565 - -0.3
100,645 - -0.5
100,683 + -0.2
100,714 - HMPREF1058_RS04175 0.11 -0.1
100,813 - +0.6
101,027 + HMPREF1058_RS04175 0.26 -2.8
101,027 + HMPREF1058_RS04175 0.26 -1.5
101,028 - HMPREF1058_RS04175 0.26 -2.3
101,028 - HMPREF1058_RS04175 0.26 -4.0
101,028 - HMPREF1058_RS04175 0.26 +0.6
101,071 + HMPREF1058_RS04175 0.29 -2.0
101,092 - HMPREF1058_RS04175 0.30 -0.4
101,093 + HMPREF1058_RS04175 0.30 -3.5
101,093 + HMPREF1058_RS04175 0.30 -1.9
101,094 - HMPREF1058_RS04175 0.30 -1.8
101,377 - HMPREF1058_RS04175 0.44 -2.7
101,415 + HMPREF1058_RS04175 0.46 -2.6
101,415 + HMPREF1058_RS04175 0.46 -2.2
101,416 - HMPREF1058_RS04175 0.46 -1.7
101,440 - HMPREF1058_RS04175 0.47 -2.7
101,507 - HMPREF1058_RS04175 0.50 -0.2
101,590 + HMPREF1058_RS04175 0.54 -2.5
101,629 + HMPREF1058_RS04175 0.56 -1.9
101,630 - HMPREF1058_RS04175 0.56 -1.2
101,632 - HMPREF1058_RS04175 0.56 -0.6
101,733 + HMPREF1058_RS04175 0.61 -0.6
101,796 + HMPREF1058_RS04175 0.64 -2.4
101,814 + HMPREF1058_RS04175 0.65 -2.5
101,824 - HMPREF1058_RS04175 0.66 +1.8
101,959 + HMPREF1058_RS04175 0.72 -1.2
102,115 + HMPREF1058_RS04175 0.80 -2.2
102,165 + HMPREF1058_RS04175 0.82 +0.1
102,333 + -1.1
102,334 - +2.4
102,387 + -1.9
102,387 + -1.6
102,414 + +2.4
102,415 - -3.4
102,523 - -2.2
102,532 + -1.1
102,610 + -0.5
102,854 + HMPREF1058_RS04170 0.17 -1.5
102,970 + +0.4
102,991 + HMPREF1058_RS04170 0.25 -2.7
103,036 - HMPREF1058_RS04170 0.28 -0.4
103,095 + HMPREF1058_RS04170 0.32 -0.2
103,098 + HMPREF1058_RS04170 0.32 -1.2
103,099 - HMPREF1058_RS04170 0.32 -0.2
103,104 + HMPREF1058_RS04170 0.32 +0.2
103,104 + HMPREF1058_RS04170 0.32 -1.7
103,105 - HMPREF1058_RS04170 0.32 -1.9
103,129 + HMPREF1058_RS04170 0.34 +0.8
103,130 - HMPREF1058_RS04170 0.34 -4.1
103,206 + HMPREF1058_RS04170 0.38 -1.9
103,230 + HMPREF1058_RS04170 0.39 -1.4
103,236 + HMPREF1058_RS04170 0.40 -1.6
103,239 + HMPREF1058_RS04170 0.40 +0.1
103,240 - HMPREF1058_RS04170 0.40 -1.2
103,246 - HMPREF1058_RS04170 0.40 +2.0
103,316 - HMPREF1058_RS04170 0.45 +2.0
103,368 + HMPREF1058_RS04170 0.48 -2.2
103,414 - HMPREF1058_RS04170 0.50 -1.7
103,471 + HMPREF1058_RS04170 0.54 -2.4
103,511 + HMPREF1058_RS04170 0.56 -0.1

Or see this region's nucleotide sequence