Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04170

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04175 and HMPREF1058_RS04170 are separated by 33 nucleotidesHMPREF1058_RS04170 and HMPREF1058_RS21070 are separated by 26 nucleotidesHMPREF1058_RS21070 and HMPREF1058_RS04165 are separated by 228 nucleotides HMPREF1058_RS04175: HMPREF1058_RS04175 - potassium-transporting ATPase subunit KdpB, at 100,489 to 102,522 _RS04175 HMPREF1058_RS04170: HMPREF1058_RS04170 - potassium-transporting ATPase subunit KdpA, at 102,556 to 104,262 _RS04170 HMPREF1058_RS21070: HMPREF1058_RS21070 - potassium-transporting ATPase subunit F, at 104,289 to 104,408 _RS21070 HMPREF1058_RS04165: HMPREF1058_RS04165 - O-acetyl-ADP-ribose deacetylase, at 104,637 to 105,263 _RS04165 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 101.590 kb on + strand, within HMPREF1058_RS04175at 101.629 kb on + strand, within HMPREF1058_RS04175at 101.630 kb on - strand, within HMPREF1058_RS04175at 101.632 kb on - strand, within HMPREF1058_RS04175at 101.733 kb on + strand, within HMPREF1058_RS04175at 101.796 kb on + strand, within HMPREF1058_RS04175at 101.814 kb on + strand, within HMPREF1058_RS04175at 101.824 kb on - strand, within HMPREF1058_RS04175at 101.959 kb on + strand, within HMPREF1058_RS04175at 102.115 kb on + strand, within HMPREF1058_RS04175at 102.165 kb on + strand, within HMPREF1058_RS04175at 102.333 kb on + strandat 102.334 kb on - strandat 102.387 kb on + strandat 102.387 kb on + strandat 102.414 kb on + strandat 102.415 kb on - strandat 102.523 kb on - strandat 102.532 kb on + strandat 102.610 kb on + strandat 102.854 kb on + strand, within HMPREF1058_RS04170at 102.970 kb on + strandat 102.991 kb on + strand, within HMPREF1058_RS04170at 103.036 kb on - strand, within HMPREF1058_RS04170at 103.095 kb on + strand, within HMPREF1058_RS04170at 103.098 kb on + strand, within HMPREF1058_RS04170at 103.099 kb on - strand, within HMPREF1058_RS04170at 103.104 kb on + strand, within HMPREF1058_RS04170at 103.104 kb on + strand, within HMPREF1058_RS04170at 103.105 kb on - strand, within HMPREF1058_RS04170at 103.129 kb on + strand, within HMPREF1058_RS04170at 103.130 kb on - strand, within HMPREF1058_RS04170at 103.206 kb on + strand, within HMPREF1058_RS04170at 103.230 kb on + strand, within HMPREF1058_RS04170at 103.236 kb on + strand, within HMPREF1058_RS04170at 103.239 kb on + strand, within HMPREF1058_RS04170at 103.240 kb on - strand, within HMPREF1058_RS04170at 103.246 kb on - strand, within HMPREF1058_RS04170at 103.316 kb on - strand, within HMPREF1058_RS04170at 103.368 kb on + strand, within HMPREF1058_RS04170at 103.414 kb on - strand, within HMPREF1058_RS04170at 103.471 kb on + strand, within HMPREF1058_RS04170at 103.511 kb on + strand, within HMPREF1058_RS04170at 103.620 kb on - strand, within HMPREF1058_RS04170at 103.751 kb on + strand, within HMPREF1058_RS04170at 103.779 kb on + strand, within HMPREF1058_RS04170at 103.807 kb on - strand, within HMPREF1058_RS04170at 103.868 kb on - strand, within HMPREF1058_RS04170at 103.904 kb on + strand, within HMPREF1058_RS04170at 103.905 kb on - strand, within HMPREF1058_RS04170at 103.938 kb on + strand, within HMPREF1058_RS04170at 103.944 kb on + strand, within HMPREF1058_RS04170at 103.945 kb on - strand, within HMPREF1058_RS04170at 104.146 kb on - strandat 104.172 kb on + strandat 104.187 kb on + strandat 104.189 kb on + strandat 104.208 kb on + strandat 104.209 kb on - strandat 104.209 kb on - strandat 104.238 kb on + strandat 104.317 kb on + strand, within HMPREF1058_RS21070at 104.317 kb on + strand, within HMPREF1058_RS21070at 104.324 kb on + strand, within HMPREF1058_RS21070at 104.346 kb on - strand, within HMPREF1058_RS21070at 104.349 kb on + strand, within HMPREF1058_RS21070at 104.369 kb on + strand, within HMPREF1058_RS21070at 104.369 kb on + strand, within HMPREF1058_RS21070at 104.369 kb on + strand, within HMPREF1058_RS21070at 104.370 kb on - strand, within HMPREF1058_RS21070at 104.413 kb on + strandat 104.414 kb on - strandat 104.443 kb on + strandat 104.513 kb on + strandat 104.531 kb on + strandat 104.569 kb on + strandat 104.594 kb on + strandat 104.652 kb on + strandat 104.714 kb on + strand, within HMPREF1058_RS04165at 104.717 kb on - strand, within HMPREF1058_RS04165at 104.725 kb on - strand, within HMPREF1058_RS04165at 104.771 kb on - strand, within HMPREF1058_RS04165at 104.858 kb on - strand, within HMPREF1058_RS04165at 104.956 kb on - strand, within HMPREF1058_RS04165at 104.956 kb on - strand, within HMPREF1058_RS04165at 105.045 kb on + strand, within HMPREF1058_RS04165at 105.118 kb on + strand, within HMPREF1058_RS04165at 105.118 kb on + strand, within HMPREF1058_RS04165at 105.118 kb on + strand, within HMPREF1058_RS04165at 105.119 kb on - strand, within HMPREF1058_RS04165at 105.119 kb on - strand, within HMPREF1058_RS04165at 105.119 kb on - strand, within HMPREF1058_RS04165at 105.119 kb on - strand, within HMPREF1058_RS04165at 105.121 kb on - strand, within HMPREF1058_RS04165at 105.121 kb on - strand, within HMPREF1058_RS04165at 105.208 kb on + strandat 105.209 kb on - strandat 105.209 kb on - strandat 105.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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101,590 + HMPREF1058_RS04175 0.54 -2.5
101,629 + HMPREF1058_RS04175 0.56 -1.9
101,630 - HMPREF1058_RS04175 0.56 -1.2
101,632 - HMPREF1058_RS04175 0.56 -0.6
101,733 + HMPREF1058_RS04175 0.61 -0.6
101,796 + HMPREF1058_RS04175 0.64 -2.4
101,814 + HMPREF1058_RS04175 0.65 -2.5
101,824 - HMPREF1058_RS04175 0.66 +1.8
101,959 + HMPREF1058_RS04175 0.72 -1.2
102,115 + HMPREF1058_RS04175 0.80 -2.2
102,165 + HMPREF1058_RS04175 0.82 +0.1
102,333 + -1.1
102,334 - +2.4
102,387 + -1.9
102,387 + -1.6
102,414 + +2.4
102,415 - -3.4
102,523 - -2.2
102,532 + -1.1
102,610 + -0.5
102,854 + HMPREF1058_RS04170 0.17 -1.5
102,970 + +0.4
102,991 + HMPREF1058_RS04170 0.25 -2.7
103,036 - HMPREF1058_RS04170 0.28 -0.4
103,095 + HMPREF1058_RS04170 0.32 -0.2
103,098 + HMPREF1058_RS04170 0.32 -1.2
103,099 - HMPREF1058_RS04170 0.32 -0.2
103,104 + HMPREF1058_RS04170 0.32 +0.2
103,104 + HMPREF1058_RS04170 0.32 -1.7
103,105 - HMPREF1058_RS04170 0.32 -1.9
103,129 + HMPREF1058_RS04170 0.34 +0.8
103,130 - HMPREF1058_RS04170 0.34 -4.1
103,206 + HMPREF1058_RS04170 0.38 -1.9
103,230 + HMPREF1058_RS04170 0.39 -1.4
103,236 + HMPREF1058_RS04170 0.40 -1.6
103,239 + HMPREF1058_RS04170 0.40 +0.1
103,240 - HMPREF1058_RS04170 0.40 -1.2
103,246 - HMPREF1058_RS04170 0.40 +2.0
103,316 - HMPREF1058_RS04170 0.45 +2.0
103,368 + HMPREF1058_RS04170 0.48 -2.2
103,414 - HMPREF1058_RS04170 0.50 -1.7
103,471 + HMPREF1058_RS04170 0.54 -2.4
103,511 + HMPREF1058_RS04170 0.56 -0.1
103,620 - HMPREF1058_RS04170 0.62 -1.4
103,751 + HMPREF1058_RS04170 0.70 -1.8
103,779 + HMPREF1058_RS04170 0.72 -1.8
103,807 - HMPREF1058_RS04170 0.73 -0.2
103,868 - HMPREF1058_RS04170 0.77 +0.8
103,904 + HMPREF1058_RS04170 0.79 -2.3
103,905 - HMPREF1058_RS04170 0.79 -1.2
103,938 + HMPREF1058_RS04170 0.81 -2.0
103,944 + HMPREF1058_RS04170 0.81 -3.5
103,945 - HMPREF1058_RS04170 0.81 -2.0
104,146 - -1.3
104,172 + -1.1
104,187 + -1.2
104,189 + -2.3
104,208 + -1.9
104,209 - -1.3
104,209 - -2.1
104,238 + -0.4
104,317 + HMPREF1058_RS21070 0.23 -3.5
104,317 + HMPREF1058_RS21070 0.23 -2.2
104,324 + HMPREF1058_RS21070 0.29 -1.4
104,346 - HMPREF1058_RS21070 0.47 +2.9
104,349 + HMPREF1058_RS21070 0.50 -3.1
104,369 + HMPREF1058_RS21070 0.67 -1.7
104,369 + HMPREF1058_RS21070 0.67 -0.9
104,369 + HMPREF1058_RS21070 0.67 -0.2
104,370 - HMPREF1058_RS21070 0.68 -0.4
104,413 + +2.2
104,414 - +1.0
104,443 + -3.5
104,513 + -2.1
104,531 + -2.1
104,569 + -2.7
104,594 + -0.9
104,652 + -0.7
104,714 + HMPREF1058_RS04165 0.12 +1.7
104,717 - HMPREF1058_RS04165 0.13 -1.1
104,725 - HMPREF1058_RS04165 0.14 +1.2
104,771 - HMPREF1058_RS04165 0.21 +0.6
104,858 - HMPREF1058_RS04165 0.35 +0.9
104,956 - HMPREF1058_RS04165 0.51 -0.0
104,956 - HMPREF1058_RS04165 0.51 +0.2
105,045 + HMPREF1058_RS04165 0.65 -1.0
105,118 + HMPREF1058_RS04165 0.77 -0.8
105,118 + HMPREF1058_RS04165 0.77 -0.3
105,118 + HMPREF1058_RS04165 0.77 -1.4
105,119 - HMPREF1058_RS04165 0.77 -1.1
105,119 - HMPREF1058_RS04165 0.77 +0.5
105,119 - HMPREF1058_RS04165 0.77 -0.4
105,119 - HMPREF1058_RS04165 0.77 +0.6
105,121 - HMPREF1058_RS04165 0.77 +0.4
105,121 - HMPREF1058_RS04165 0.77 -0.1
105,208 + -0.4
105,209 - -0.4
105,209 - -1.0
105,238 + -0.4

Or see this region's nucleotide sequence