Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03140 and HMPREF1058_RS03135 are separated by 78 nucleotides HMPREF1058_RS03135 and HMPREF1058_RS03130 are separated by 576 nucleotides HMPREF1058_RS03130 and HMPREF1058_RS21125 are separated by 11 nucleotides HMPREF1058_RS21125 and HMPREF1058_RS03125 are separated by 104 nucleotides
HMPREF1058_RS03140: HMPREF1058_RS03140 - 23S ribosomal RNA, at 1,985 to 4,872
_RS03140
HMPREF1058_RS03135: HMPREF1058_RS03135 - 5S ribosomal RNA, at 4,951 to 5,061
_RS03135
HMPREF1058_RS03130: HMPREF1058_RS03130 - DUF177 domain-containing protein, at 5,638 to 6,171
_RS03130
HMPREF1058_RS21125: HMPREF1058_RS21125 - 50S ribosomal protein L32, at 6,183 to 6,368
_RS21125
HMPREF1058_RS03125: HMPREF1058_RS03125 - ketoacyl-ACP synthase III, at 6,473 to 7,477
_RS03125
Position (kb) 5
6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4.850 kb on + strand at 4.962 kb on + strand, within HMPREF1058_RS03135 at 4.962 kb on + strand, within HMPREF1058_RS03135 at 5.004 kb on + strand, within HMPREF1058_RS03135 at 5.290 kb on - strand at 5.290 kb on - strand at 5.363 kb on + strand at 5.366 kb on + strand at 5.366 kb on + strand at 5.367 kb on - strand at 5.414 kb on - strand at 5.429 kb on - strand at 5.485 kb on - strand at 5.550 kb on + strand at 5.589 kb on + strand at 5.589 kb on + strand at 5.617 kb on + strand at 5.617 kb on + strand at 5.617 kb on + strand at 5.619 kb on + strand at 5.659 kb on + strand at 5.900 kb on + strand, within HMPREF1058_RS03130 at 5.906 kb on + strand, within HMPREF1058_RS03130 at 5.906 kb on + strand, within HMPREF1058_RS03130 at 5.950 kb on + strand, within HMPREF1058_RS03130 at 5.970 kb on + strand, within HMPREF1058_RS03130 at 6.077 kb on + strand, within HMPREF1058_RS03130 at 6.125 kb on + strand at 6.162 kb on + strand at 6.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 4,850 + +1.0 4,962 + HMPREF1058_RS03135 0.10 -1.1 4,962 + HMPREF1058_RS03135 0.10 -0.1 5,004 + HMPREF1058_RS03135 0.48 +0.9 5,290 - +0.5 5,290 - -0.1 5,363 + -1.2 5,366 + -0.8 5,366 + -0.3 5,367 - -0.3 5,414 - -0.9 5,429 - +0.6 5,485 - -1.4 5,550 + -0.8 5,589 + -0.7 5,589 + -1.9 5,617 + -1.8 5,617 + -2.8 5,617 + -2.9 5,619 + -4.0 5,659 + -3.0 5,900 + HMPREF1058_RS03130 0.49 -1.2 5,906 + HMPREF1058_RS03130 0.50 -1.7 5,906 + HMPREF1058_RS03130 0.50 -2.1 5,950 + HMPREF1058_RS03130 0.58 -2.7 5,970 + HMPREF1058_RS03130 0.62 -2.5 6,077 + HMPREF1058_RS03130 0.82 -0.5 6,125 + -0.2 6,162 + -0.3 6,461 + +1.6
Or see this region's nucleotide sequence