Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00710

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00720 and HMPREF1058_RS00715 are separated by 115 nucleotidesHMPREF1058_RS00715 and HMPREF1058_RS00710 are separated by 40 nucleotidesHMPREF1058_RS00710 and HMPREF1058_RS00705 are separated by 119 nucleotides HMPREF1058_RS00720: HMPREF1058_RS00720 - GTPase ObgE, at 6,463 to 7,647 _RS00720 HMPREF1058_RS00715: HMPREF1058_RS00715 - adenylate kinase, at 7,763 to 8,332 _RS00715 HMPREF1058_RS00710: HMPREF1058_RS00710 - hypoxanthine phosphoribosyltransferase, at 8,373 to 8,909 _RS00710 HMPREF1058_RS00705: HMPREF1058_RS00705 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 9,029 to 10,564 _RS00705 Position (kb) 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 7.651 kb on + strandat 7.698 kb on - strandat 7.707 kb on - strandat 7.759 kb on - strandat 7.762 kb on - strandat 8.390 kb on - strandat 8.406 kb on - strandat 8.406 kb on - strandat 8.423 kb on - strandat 8.460 kb on - strand, within HMPREF1058_RS00710at 8.474 kb on - strand, within HMPREF1058_RS00710at 8.479 kb on - strand, within HMPREF1058_RS00710at 8.479 kb on - strand, within HMPREF1058_RS00710at 8.479 kb on - strand, within HMPREF1058_RS00710at 8.523 kb on - strand, within HMPREF1058_RS00710at 8.557 kb on - strand, within HMPREF1058_RS00710at 8.601 kb on - strand, within HMPREF1058_RS00710at 8.622 kb on - strand, within HMPREF1058_RS00710at 8.634 kb on - strand, within HMPREF1058_RS00710at 8.796 kb on - strand, within HMPREF1058_RS00710at 8.806 kb on - strand, within HMPREF1058_RS00710at 8.886 kb on - strandat 8.886 kb on - strandat 8.991 kb on + strandat 8.992 kb on - strandat 9.006 kb on - strandat 9.054 kb on + strandat 9.054 kb on + strandat 9.178 kb on - strandat 9.230 kb on - strand, within HMPREF1058_RS00705at 9.255 kb on + strand, within HMPREF1058_RS00705at 9.256 kb on - strand, within HMPREF1058_RS00705at 9.256 kb on - strand, within HMPREF1058_RS00705at 9.354 kb on + strand, within HMPREF1058_RS00705at 9.355 kb on - strand, within HMPREF1058_RS00705at 9.400 kb on - strand, within HMPREF1058_RS00705at 9.467 kb on + strand, within HMPREF1058_RS00705at 9.467 kb on + strand, within HMPREF1058_RS00705at 9.469 kb on + strand, within HMPREF1058_RS00705at 9.469 kb on + strand, within HMPREF1058_RS00705at 9.473 kb on - strand, within HMPREF1058_RS00705at 9.473 kb on - strand, within HMPREF1058_RS00705at 9.493 kb on - strand, within HMPREF1058_RS00705at 9.507 kb on + strand, within HMPREF1058_RS00705at 9.539 kb on + strand, within HMPREF1058_RS00705at 9.540 kb on - strand, within HMPREF1058_RS00705at 9.540 kb on - strand, within HMPREF1058_RS00705at 9.542 kb on - strand, within HMPREF1058_RS00705at 9.542 kb on - strand, within HMPREF1058_RS00705at 9.591 kb on + strand, within HMPREF1058_RS00705at 9.595 kb on + strand, within HMPREF1058_RS00705at 9.595 kb on + strand, within HMPREF1058_RS00705at 9.596 kb on - strand, within HMPREF1058_RS00705at 9.596 kb on - strand, within HMPREF1058_RS00705at 9.596 kb on - strand, within HMPREF1058_RS00705at 9.596 kb on - strand, within HMPREF1058_RS00705at 9.698 kb on + strand, within HMPREF1058_RS00705at 9.701 kb on + strand, within HMPREF1058_RS00705at 9.701 kb on + strand, within HMPREF1058_RS00705at 9.701 kb on + strand, within HMPREF1058_RS00705at 9.701 kb on + strand, within HMPREF1058_RS00705at 9.702 kb on - strand, within HMPREF1058_RS00705at 9.702 kb on - strand, within HMPREF1058_RS00705at 9.702 kb on - strand, within HMPREF1058_RS00705at 9.702 kb on - strand, within HMPREF1058_RS00705at 9.702 kb on - strand, within HMPREF1058_RS00705at 9.704 kb on - strand, within HMPREF1058_RS00705at 9.801 kb on - strand, within HMPREF1058_RS00705at 9.877 kb on - strand, within HMPREF1058_RS00705at 9.877 kb on - strand, within HMPREF1058_RS00705

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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7,651 + -1.2
7,698 - +0.3
7,707 - -0.9
7,759 - -1.3
7,762 - -1.0
8,390 - -1.6
8,406 - -2.3
8,406 - -3.0
8,423 - -3.2
8,460 - HMPREF1058_RS00710 0.16 -2.1
8,474 - HMPREF1058_RS00710 0.19 -1.9
8,479 - HMPREF1058_RS00710 0.20 -3.4
8,479 - HMPREF1058_RS00710 0.20 -0.3
8,479 - HMPREF1058_RS00710 0.20 -2.3
8,523 - HMPREF1058_RS00710 0.28 -2.6
8,557 - HMPREF1058_RS00710 0.34 -1.0
8,601 - HMPREF1058_RS00710 0.42 -3.2
8,622 - HMPREF1058_RS00710 0.46 -2.4
8,634 - HMPREF1058_RS00710 0.49 -2.0
8,796 - HMPREF1058_RS00710 0.79 -3.8
8,806 - HMPREF1058_RS00710 0.81 -2.7
8,886 - -0.9
8,886 - -0.7
8,991 + -1.5
8,992 - -2.9
9,006 - -0.0
9,054 + -0.5
9,054 + +0.4
9,178 - +0.0
9,230 - HMPREF1058_RS00705 0.13 -0.9
9,255 + HMPREF1058_RS00705 0.15 +0.6
9,256 - HMPREF1058_RS00705 0.15 +0.8
9,256 - HMPREF1058_RS00705 0.15 +1.1
9,354 + HMPREF1058_RS00705 0.21 -1.3
9,355 - HMPREF1058_RS00705 0.21 -1.0
9,400 - HMPREF1058_RS00705 0.24 -0.8
9,467 + HMPREF1058_RS00705 0.29 -0.6
9,467 + HMPREF1058_RS00705 0.29 +2.7
9,469 + HMPREF1058_RS00705 0.29 +0.5
9,469 + HMPREF1058_RS00705 0.29 -0.8
9,473 - HMPREF1058_RS00705 0.29 -0.3
9,473 - HMPREF1058_RS00705 0.29 -0.2
9,493 - HMPREF1058_RS00705 0.30 +1.6
9,507 + HMPREF1058_RS00705 0.31 -1.4
9,539 + HMPREF1058_RS00705 0.33 -0.6
9,540 - HMPREF1058_RS00705 0.33 -3.2
9,540 - HMPREF1058_RS00705 0.33 +1.9
9,542 - HMPREF1058_RS00705 0.33 +0.6
9,542 - HMPREF1058_RS00705 0.33 -2.3
9,591 + HMPREF1058_RS00705 0.37 -0.1
9,595 + HMPREF1058_RS00705 0.37 +0.2
9,595 + HMPREF1058_RS00705 0.37 +0.2
9,596 - HMPREF1058_RS00705 0.37 -0.3
9,596 - HMPREF1058_RS00705 0.37 -0.7
9,596 - HMPREF1058_RS00705 0.37 -1.3
9,596 - HMPREF1058_RS00705 0.37 +2.0
9,698 + HMPREF1058_RS00705 0.44 -0.8
9,701 + HMPREF1058_RS00705 0.44 -1.6
9,701 + HMPREF1058_RS00705 0.44 -1.2
9,701 + HMPREF1058_RS00705 0.44 -0.2
9,701 + HMPREF1058_RS00705 0.44 +0.1
9,702 - HMPREF1058_RS00705 0.44 -0.1
9,702 - HMPREF1058_RS00705 0.44 +0.3
9,702 - HMPREF1058_RS00705 0.44 -1.5
9,702 - HMPREF1058_RS00705 0.44 -0.3
9,702 - HMPREF1058_RS00705 0.44 -1.0
9,704 - HMPREF1058_RS00705 0.44 +1.2
9,801 - HMPREF1058_RS00705 0.50 +0.7
9,877 - HMPREF1058_RS00705 0.55 +0.4
9,877 - HMPREF1058_RS00705 0.55 +0.7

Or see this region's nucleotide sequence