Experiment: hypophosphite 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05435 and HMPREF1058_RS05430 are separated by 50 nucleotides HMPREF1058_RS05430 and HMPREF1058_RS05425 are separated by 28 nucleotides HMPREF1058_RS05425 and HMPREF1058_RS05420 are separated by 13 nucleotides HMPREF1058_RS05420 and HMPREF1058_RS05415 are separated by 76 nucleotides
HMPREF1058_RS05435: HMPREF1058_RS05435 - MarC family protein, at 167,078 to 167,725
_RS05435
HMPREF1058_RS05430: HMPREF1058_RS05430 - ferritin, at 167,776 to 168,258
_RS05430
HMPREF1058_RS05425: HMPREF1058_RS05425 - class I fructose-bisphosphate aldolase, at 168,287 to 169,336
_RS05425
HMPREF1058_RS05420: HMPREF1058_RS05420 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 169,350 to 170,099
_RS05420
HMPREF1058_RS05415: HMPREF1058_RS05415 - Hsp20/alpha crystallin family protein, at 170,176 to 170,604
_RS05415
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.318 kb on - strand, within HMPREF1058_RS05435 at 167.344 kb on + strand, within HMPREF1058_RS05435 at 167.345 kb on - strand, within HMPREF1058_RS05435 at 167.410 kb on + strand, within HMPREF1058_RS05435 at 167.472 kb on + strand, within HMPREF1058_RS05435 at 167.514 kb on + strand, within HMPREF1058_RS05435 at 167.736 kb on + strand at 167.825 kb on + strand, within HMPREF1058_RS05430 at 167.847 kb on - strand, within HMPREF1058_RS05430 at 167.936 kb on - strand, within HMPREF1058_RS05430 at 167.951 kb on - strand, within HMPREF1058_RS05430 at 168.093 kb on - strand, within HMPREF1058_RS05430 at 168.174 kb on - strand, within HMPREF1058_RS05430 at 168.225 kb on + strand at 168.257 kb on - strand at 168.284 kb on - strand at 168.304 kb on - strand at 168.327 kb on - strand at 168.343 kb on + strand at 168.364 kb on + strand at 168.390 kb on + strand at 168.391 kb on - strand at 168.395 kb on - strand, within HMPREF1058_RS05425 at 168.421 kb on + strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.423 kb on + strand, within HMPREF1058_RS05425 at 168.424 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.646 kb on + strand, within HMPREF1058_RS05425 at 168.647 kb on - strand, within HMPREF1058_RS05425 at 168.823 kb on - strand, within HMPREF1058_RS05425 at 168.868 kb on + strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.885 kb on - strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.061 kb on + strand, within HMPREF1058_RS05425 at 169.207 kb on - strand, within HMPREF1058_RS05425 at 169.306 kb on - strand at 169.306 kb on - strand at 169.345 kb on + strand at 169.345 kb on + strand at 169.360 kb on + strand at 169.370 kb on - strand at 169.370 kb on - strand at 169.433 kb on - strand, within HMPREF1058_RS05420 at 169.510 kb on - strand, within HMPREF1058_RS05420 at 169.640 kb on + strand, within HMPREF1058_RS05420 at 169.678 kb on + strand, within HMPREF1058_RS05420 at 169.679 kb on - strand, within HMPREF1058_RS05420 at 169.699 kb on - strand, within HMPREF1058_RS05420 at 169.815 kb on - strand, within HMPREF1058_RS05420 at 169.867 kb on - strand, within HMPREF1058_RS05420 at 169.950 kb on - strand, within HMPREF1058_RS05420 at 169.984 kb on - strand, within HMPREF1058_RS05420 at 170.148 kb on + strand at 170.303 kb on - strand, within HMPREF1058_RS05415 at 170.303 kb on - strand, within HMPREF1058_RS05415
Per-strain Table
Position Strand Gene LocusTag Fraction hypophosphite 1 mM phosphorus source remove 167,318 - HMPREF1058_RS05435 0.37 +0.7 167,344 + HMPREF1058_RS05435 0.41 -0.4 167,345 - HMPREF1058_RS05435 0.41 -0.1 167,410 + HMPREF1058_RS05435 0.51 +0.8 167,472 + HMPREF1058_RS05435 0.61 -2.1 167,514 + HMPREF1058_RS05435 0.67 +0.4 167,736 + -0.2 167,825 + HMPREF1058_RS05430 0.10 +0.5 167,847 - HMPREF1058_RS05430 0.15 -0.8 167,936 - HMPREF1058_RS05430 0.33 -2.5 167,951 - HMPREF1058_RS05430 0.36 -1.2 168,093 - HMPREF1058_RS05430 0.66 -3.4 168,174 - HMPREF1058_RS05430 0.82 -0.7 168,225 + -0.3 168,257 - +3.2 168,284 - -1.2 168,304 - +0.6 168,327 - +0.6 168,343 + -2.3 168,364 + -1.0 168,390 + -1.1 168,391 - +0.1 168,395 - HMPREF1058_RS05425 0.10 +0.4 168,421 + HMPREF1058_RS05425 0.13 -1.1 168,422 - HMPREF1058_RS05425 0.13 -0.0 168,422 - HMPREF1058_RS05425 0.13 -2.4 168,423 + HMPREF1058_RS05425 0.13 -2.2 168,424 - HMPREF1058_RS05425 0.13 -1.7 168,514 - HMPREF1058_RS05425 0.22 -1.4 168,514 - HMPREF1058_RS05425 0.22 -3.4 168,646 + HMPREF1058_RS05425 0.34 -1.5 168,647 - HMPREF1058_RS05425 0.34 +1.3 168,823 - HMPREF1058_RS05425 0.51 -1.2 168,868 + HMPREF1058_RS05425 0.55 +1.6 168,877 - HMPREF1058_RS05425 0.56 +0.9 168,877 - HMPREF1058_RS05425 0.56 -1.3 168,885 - HMPREF1058_RS05425 0.57 -0.6 169,057 + HMPREF1058_RS05425 0.73 -1.3 169,057 + HMPREF1058_RS05425 0.73 -0.7 169,061 + HMPREF1058_RS05425 0.74 -0.7 169,207 - HMPREF1058_RS05425 0.88 -0.4 169,306 - -0.4 169,306 - +0.2 169,345 + -1.5 169,345 + -0.7 169,360 + -1.2 169,370 - +0.9 169,370 - -0.8 169,433 - HMPREF1058_RS05420 0.11 -2.5 169,510 - HMPREF1058_RS05420 0.21 -0.1 169,640 + HMPREF1058_RS05420 0.39 -2.1 169,678 + HMPREF1058_RS05420 0.44 -1.8 169,679 - HMPREF1058_RS05420 0.44 +0.6 169,699 - HMPREF1058_RS05420 0.47 -0.5 169,815 - HMPREF1058_RS05420 0.62 -0.5 169,867 - HMPREF1058_RS05420 0.69 -1.6 169,950 - HMPREF1058_RS05420 0.80 -0.3 169,984 - HMPREF1058_RS05420 0.85 -1.8 170,148 + -0.8 170,303 - HMPREF1058_RS05415 0.30 -2.1 170,303 - HMPREF1058_RS05415 0.30 -1.0
Or see this region's nucleotide sequence