Experiment: no P control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15950 and HMPREF1058_RS15945 are separated by 242 nucleotides HMPREF1058_RS15945 and HMPREF1058_RS15940 are separated by 104 nucleotides
HMPREF1058_RS15950: HMPREF1058_RS15950 - TonB-dependent receptor, at 798,380 to 801,418
_RS15950
HMPREF1058_RS15945: HMPREF1058_RS15945 - helix-turn-helix domain-containing protein, at 801,661 to 804,480
_RS15945
HMPREF1058_RS15940: HMPREF1058_RS15940 - carboxylating nicotinate-nucleotide diphosphorylase, at 804,585 to 805,436
_RS15940
Position (kb) 801
802
803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 800.689 kb on - strand, within HMPREF1058_RS15950 at 800.693 kb on - strand at 800.693 kb on - strand, within HMPREF1058_RS15950 at 800.726 kb on - strand, within HMPREF1058_RS15950 at 800.803 kb on + strand, within HMPREF1058_RS15950 at 800.912 kb on + strand, within HMPREF1058_RS15950 at 800.912 kb on + strand, within HMPREF1058_RS15950 at 800.983 kb on + strand, within HMPREF1058_RS15950 at 800.993 kb on - strand, within HMPREF1058_RS15950 at 801.079 kb on + strand, within HMPREF1058_RS15950 at 801.079 kb on + strand, within HMPREF1058_RS15950 at 801.092 kb on - strand, within HMPREF1058_RS15950 at 801.092 kb on - strand, within HMPREF1058_RS15950 at 801.094 kb on - strand, within HMPREF1058_RS15950 at 801.102 kb on + strand, within HMPREF1058_RS15950 at 801.102 kb on + strand, within HMPREF1058_RS15950 at 801.102 kb on + strand, within HMPREF1058_RS15950 at 801.103 kb on - strand, within HMPREF1058_RS15950 at 801.251 kb on - strand at 801.269 kb on + strand at 801.270 kb on - strand at 801.276 kb on - strand at 801.329 kb on + strand at 801.330 kb on - strand at 801.331 kb on + strand at 801.332 kb on - strand at 801.370 kb on - strand at 801.392 kb on - strand at 801.476 kb on + strand at 801.477 kb on - strand at 801.510 kb on - strand at 801.587 kb on + strand at 801.679 kb on - strand at 801.680 kb on + strand at 801.680 kb on + strand at 801.683 kb on + strand at 801.686 kb on - strand at 801.686 kb on - strand at 801.687 kb on + strand at 801.690 kb on + strand at 801.691 kb on - strand at 801.691 kb on - strand at 801.734 kb on - strand at 801.784 kb on - strand at 801.844 kb on + strand at 801.907 kb on - strand at 801.907 kb on - strand at 801.929 kb on + strand at 801.930 kb on - strand at 801.942 kb on - strand at 801.980 kb on + strand, within HMPREF1058_RS15945 at 801.983 kb on - strand, within HMPREF1058_RS15945 at 802.026 kb on + strand, within HMPREF1058_RS15945 at 802.027 kb on - strand, within HMPREF1058_RS15945 at 802.056 kb on + strand, within HMPREF1058_RS15945 at 802.056 kb on + strand, within HMPREF1058_RS15945 at 802.057 kb on - strand, within HMPREF1058_RS15945 at 802.057 kb on - strand, within HMPREF1058_RS15945 at 802.058 kb on + strand, within HMPREF1058_RS15945 at 802.092 kb on + strand, within HMPREF1058_RS15945 at 802.093 kb on - strand, within HMPREF1058_RS15945 at 802.123 kb on + strand, within HMPREF1058_RS15945 at 802.124 kb on - strand, within HMPREF1058_RS15945 at 802.225 kb on - strand, within HMPREF1058_RS15945 at 802.225 kb on - strand, within HMPREF1058_RS15945 at 802.228 kb on + strand, within HMPREF1058_RS15945 at 802.229 kb on - strand, within HMPREF1058_RS15945 at 802.229 kb on - strand, within HMPREF1058_RS15945 at 802.286 kb on + strand, within HMPREF1058_RS15945 at 802.300 kb on + strand, within HMPREF1058_RS15945 at 802.318 kb on + strand, within HMPREF1058_RS15945 at 802.319 kb on - strand, within HMPREF1058_RS15945 at 802.319 kb on - strand, within HMPREF1058_RS15945 at 802.319 kb on - strand, within HMPREF1058_RS15945 at 802.322 kb on + strand, within HMPREF1058_RS15945 at 802.322 kb on + strand, within HMPREF1058_RS15945 at 802.322 kb on + strand, within HMPREF1058_RS15945 at 802.357 kb on + strand, within HMPREF1058_RS15945 at 802.358 kb on - strand, within HMPREF1058_RS15945 at 802.358 kb on - strand, within HMPREF1058_RS15945 at 802.358 kb on - strand, within HMPREF1058_RS15945 at 802.420 kb on + strand, within HMPREF1058_RS15945 at 802.421 kb on - strand, within HMPREF1058_RS15945 at 802.444 kb on - strand, within HMPREF1058_RS15945 at 802.563 kb on + strand, within HMPREF1058_RS15945 at 802.576 kb on + strand, within HMPREF1058_RS15945 at 802.577 kb on - strand, within HMPREF1058_RS15945 at 802.608 kb on + strand, within HMPREF1058_RS15945 at 802.609 kb on - strand, within HMPREF1058_RS15945 at 802.635 kb on + strand, within HMPREF1058_RS15945 at 802.657 kb on + strand, within HMPREF1058_RS15945 at 802.658 kb on - strand, within HMPREF1058_RS15945 at 802.659 kb on + strand, within HMPREF1058_RS15945 at 802.660 kb on - strand, within HMPREF1058_RS15945 at 802.699 kb on - strand, within HMPREF1058_RS15945 at 802.717 kb on + strand, within HMPREF1058_RS15945 at 802.775 kb on - strand, within HMPREF1058_RS15945 at 802.836 kb on + strand, within HMPREF1058_RS15945 at 802.889 kb on + strand, within HMPREF1058_RS15945 at 802.894 kb on - strand, within HMPREF1058_RS15945 at 802.894 kb on - strand, within HMPREF1058_RS15945 at 802.894 kb on - strand, within HMPREF1058_RS15945 at 802.919 kb on - strand at 802.969 kb on + strand, within HMPREF1058_RS15945 at 802.975 kb on + strand, within HMPREF1058_RS15945 at 803.052 kb on - strand, within HMPREF1058_RS15945 at 803.117 kb on - strand, within HMPREF1058_RS15945 at 803.164 kb on + strand, within HMPREF1058_RS15945 at 803.188 kb on - strand, within HMPREF1058_RS15945 at 803.226 kb on + strand at 803.265 kb on + strand, within HMPREF1058_RS15945 at 803.287 kb on + strand at 803.288 kb on - strand, within HMPREF1058_RS15945 at 803.292 kb on + strand, within HMPREF1058_RS15945 at 803.317 kb on - strand, within HMPREF1058_RS15945 at 803.318 kb on + strand, within HMPREF1058_RS15945 at 803.319 kb on - strand, within HMPREF1058_RS15945 at 803.319 kb on - strand, within HMPREF1058_RS15945 at 803.319 kb on - strand, within HMPREF1058_RS15945 at 803.322 kb on + strand, within HMPREF1058_RS15945 at 803.329 kb on + strand, within HMPREF1058_RS15945 at 803.408 kb on - strand, within HMPREF1058_RS15945 at 803.471 kb on + strand, within HMPREF1058_RS15945 at 803.472 kb on - strand, within HMPREF1058_RS15945 at 803.488 kb on - strand, within HMPREF1058_RS15945 at 803.488 kb on - strand, within HMPREF1058_RS15945 at 803.586 kb on - strand, within HMPREF1058_RS15945 at 803.652 kb on + strand, within HMPREF1058_RS15945 at 803.653 kb on - strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.685 kb on + strand, within HMPREF1058_RS15945 at 803.686 kb on - strand, within HMPREF1058_RS15945 at 803.686 kb on - strand, within HMPREF1058_RS15945 at 803.687 kb on + strand, within HMPREF1058_RS15945 at 803.688 kb on - strand, within HMPREF1058_RS15945 at 803.706 kb on + strand, within HMPREF1058_RS15945 at 803.734 kb on - strand, within HMPREF1058_RS15945 at 803.739 kb on - strand, within HMPREF1058_RS15945 at 803.808 kb on + strand, within HMPREF1058_RS15945 at 803.809 kb on - strand, within HMPREF1058_RS15945 at 803.851 kb on + strand, within HMPREF1058_RS15945 at 803.857 kb on - strand, within HMPREF1058_RS15945 at 803.857 kb on - strand, within HMPREF1058_RS15945 at 803.870 kb on + strand, within HMPREF1058_RS15945 at 803.908 kb on - strand, within HMPREF1058_RS15945 at 803.925 kb on - strand, within HMPREF1058_RS15945 at 803.928 kb on + strand, within HMPREF1058_RS15945 at 803.929 kb on - strand, within HMPREF1058_RS15945 at 804.035 kb on - strand, within HMPREF1058_RS15945 at 804.036 kb on + strand, within HMPREF1058_RS15945 at 804.037 kb on - strand, within HMPREF1058_RS15945 at 804.063 kb on + strand, within HMPREF1058_RS15945 at 804.090 kb on - strand, within HMPREF1058_RS15945 at 804.226 kb on - strand at 804.226 kb on - strand at 804.251 kb on + strand at 804.252 kb on - strand at 804.252 kb on - strand at 804.254 kb on - strand at 804.254 kb on - strand at 804.254 kb on - strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.264 kb on - strand at 804.297 kb on + strand at 804.309 kb on - strand at 804.314 kb on + strand at 804.314 kb on + strand at 804.314 kb on + strand at 804.315 kb on - strand at 804.336 kb on - strand at 804.343 kb on - strand at 804.378 kb on - strand at 804.477 kb on - strand at 804.479 kb on - strand at 804.479 kb on - strand at 804.495 kb on + strand at 804.505 kb on + strand at 804.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no P control remove 800,689 - HMPREF1058_RS15950 0.76 +0.2 800,693 - +0.4 800,693 - HMPREF1058_RS15950 0.76 +0.5 800,726 - HMPREF1058_RS15950 0.77 +0.4 800,803 + HMPREF1058_RS15950 0.80 -1.3 800,912 + HMPREF1058_RS15950 0.83 +0.7 800,912 + HMPREF1058_RS15950 0.83 -0.9 800,983 + HMPREF1058_RS15950 0.86 -0.4 800,993 - HMPREF1058_RS15950 0.86 -0.5 801,079 + HMPREF1058_RS15950 0.89 -0.4 801,079 + HMPREF1058_RS15950 0.89 +0.0 801,092 - HMPREF1058_RS15950 0.89 -0.0 801,092 - HMPREF1058_RS15950 0.89 -0.3 801,094 - HMPREF1058_RS15950 0.89 +2.7 801,102 + HMPREF1058_RS15950 0.90 -2.3 801,102 + HMPREF1058_RS15950 0.90 +0.1 801,102 + HMPREF1058_RS15950 0.90 -0.5 801,103 - HMPREF1058_RS15950 0.90 -1.4 801,251 - +1.4 801,269 + -1.4 801,270 - -0.1 801,276 - -0.4 801,329 + +1.6 801,330 - +0.3 801,331 + +1.2 801,332 - +1.0 801,370 - -0.6 801,392 - -0.7 801,476 + -2.7 801,477 - +0.6 801,510 - -1.1 801,587 + -1.5 801,679 - -1.3 801,680 + -0.4 801,680 + -0.7 801,683 + +3.2 801,686 - -1.6 801,686 - +1.0 801,687 + -1.1 801,690 + -1.3 801,691 - -0.8 801,691 - +0.4 801,734 - +0.1 801,784 - +2.1 801,844 + -1.0 801,907 - +1.4 801,907 - +0.2 801,929 + -0.5 801,930 - +0.3 801,942 - -1.2 801,980 + HMPREF1058_RS15945 0.11 -1.4 801,983 - HMPREF1058_RS15945 0.11 -1.7 802,026 + HMPREF1058_RS15945 0.13 -0.5 802,027 - HMPREF1058_RS15945 0.13 +0.4 802,056 + HMPREF1058_RS15945 0.14 -0.9 802,056 + HMPREF1058_RS15945 0.14 -0.0 802,057 - HMPREF1058_RS15945 0.14 -1.6 802,057 - HMPREF1058_RS15945 0.14 +0.9 802,058 + HMPREF1058_RS15945 0.14 -0.2 802,092 + HMPREF1058_RS15945 0.15 -0.4 802,093 - HMPREF1058_RS15945 0.15 -1.1 802,123 + HMPREF1058_RS15945 0.16 -1.1 802,124 - HMPREF1058_RS15945 0.16 -0.6 802,225 - HMPREF1058_RS15945 0.20 +2.0 802,225 - HMPREF1058_RS15945 0.20 +0.1 802,228 + HMPREF1058_RS15945 0.20 +1.0 802,229 - HMPREF1058_RS15945 0.20 -1.7 802,229 - HMPREF1058_RS15945 0.20 -0.9 802,286 + HMPREF1058_RS15945 0.22 -0.8 802,300 + HMPREF1058_RS15945 0.23 +1.6 802,318 + HMPREF1058_RS15945 0.23 -1.7 802,319 - HMPREF1058_RS15945 0.23 +2.7 802,319 - HMPREF1058_RS15945 0.23 -1.9 802,319 - HMPREF1058_RS15945 0.23 -2.2 802,322 + HMPREF1058_RS15945 0.23 -2.0 802,322 + HMPREF1058_RS15945 0.23 +0.6 802,322 + HMPREF1058_RS15945 0.23 -2.8 802,357 + HMPREF1058_RS15945 0.25 +0.7 802,358 - HMPREF1058_RS15945 0.25 +1.3 802,358 - HMPREF1058_RS15945 0.25 +0.7 802,358 - HMPREF1058_RS15945 0.25 -0.5 802,420 + HMPREF1058_RS15945 0.27 -1.9 802,421 - HMPREF1058_RS15945 0.27 +3.1 802,444 - HMPREF1058_RS15945 0.28 -1.4 802,563 + HMPREF1058_RS15945 0.32 -2.3 802,576 + HMPREF1058_RS15945 0.32 +0.1 802,577 - HMPREF1058_RS15945 0.32 +0.9 802,608 + HMPREF1058_RS15945 0.34 -0.4 802,609 - HMPREF1058_RS15945 0.34 +1.5 802,635 + HMPREF1058_RS15945 0.35 -0.0 802,657 + HMPREF1058_RS15945 0.35 +0.2 802,658 - HMPREF1058_RS15945 0.35 -1.2 802,659 + HMPREF1058_RS15945 0.35 +0.8 802,660 - HMPREF1058_RS15945 0.35 -0.7 802,699 - HMPREF1058_RS15945 0.37 +0.1 802,717 + HMPREF1058_RS15945 0.37 +0.2 802,775 - HMPREF1058_RS15945 0.40 -1.4 802,836 + HMPREF1058_RS15945 0.42 +2.3 802,889 + HMPREF1058_RS15945 0.44 -1.0 802,894 - HMPREF1058_RS15945 0.44 +0.3 802,894 - HMPREF1058_RS15945 0.44 -1.6 802,894 - HMPREF1058_RS15945 0.44 +1.7 802,919 - -0.2 802,969 + HMPREF1058_RS15945 0.46 -0.5 802,975 + HMPREF1058_RS15945 0.47 +0.1 803,052 - HMPREF1058_RS15945 0.49 -0.5 803,117 - HMPREF1058_RS15945 0.52 +0.1 803,164 + HMPREF1058_RS15945 0.53 -1.6 803,188 - HMPREF1058_RS15945 0.54 -1.0 803,226 + +2.0 803,265 + HMPREF1058_RS15945 0.57 -0.4 803,287 + +1.0 803,288 - HMPREF1058_RS15945 0.58 +2.6 803,292 + HMPREF1058_RS15945 0.58 -2.2 803,317 - HMPREF1058_RS15945 0.59 -1.8 803,318 + HMPREF1058_RS15945 0.59 -0.1 803,319 - HMPREF1058_RS15945 0.59 -0.3 803,319 - HMPREF1058_RS15945 0.59 +2.1 803,319 - HMPREF1058_RS15945 0.59 +1.0 803,322 + HMPREF1058_RS15945 0.59 +0.7 803,329 + HMPREF1058_RS15945 0.59 -1.2 803,408 - HMPREF1058_RS15945 0.62 +0.1 803,471 + HMPREF1058_RS15945 0.64 -0.0 803,472 - HMPREF1058_RS15945 0.64 -1.1 803,488 - HMPREF1058_RS15945 0.65 +1.2 803,488 - HMPREF1058_RS15945 0.65 +2.1 803,586 - HMPREF1058_RS15945 0.68 +0.5 803,652 + HMPREF1058_RS15945 0.71 -1.2 803,653 - HMPREF1058_RS15945 0.71 +1.0 803,685 + HMPREF1058_RS15945 0.72 +0.8 803,685 + HMPREF1058_RS15945 0.72 +0.4 803,685 + HMPREF1058_RS15945 0.72 +1.1 803,686 - HMPREF1058_RS15945 0.72 +0.5 803,686 - HMPREF1058_RS15945 0.72 +0.1 803,687 + HMPREF1058_RS15945 0.72 -0.2 803,688 - HMPREF1058_RS15945 0.72 -0.2 803,706 + HMPREF1058_RS15945 0.73 -0.5 803,734 - HMPREF1058_RS15945 0.74 +1.2 803,739 - HMPREF1058_RS15945 0.74 -0.5 803,808 + HMPREF1058_RS15945 0.76 +2.0 803,809 - HMPREF1058_RS15945 0.76 +0.5 803,851 + HMPREF1058_RS15945 0.78 -0.2 803,857 - HMPREF1058_RS15945 0.78 -0.5 803,857 - HMPREF1058_RS15945 0.78 -1.4 803,870 + HMPREF1058_RS15945 0.78 +0.0 803,908 - HMPREF1058_RS15945 0.80 +0.4 803,925 - HMPREF1058_RS15945 0.80 +1.5 803,928 + HMPREF1058_RS15945 0.80 +0.2 803,929 - HMPREF1058_RS15945 0.80 -0.0 804,035 - HMPREF1058_RS15945 0.84 -2.0 804,036 + HMPREF1058_RS15945 0.84 -0.1 804,037 - HMPREF1058_RS15945 0.84 -1.5 804,063 + HMPREF1058_RS15945 0.85 -0.1 804,090 - HMPREF1058_RS15945 0.86 -0.4 804,226 - -0.9 804,226 - -0.7 804,251 + -0.0 804,252 - +1.2 804,252 - -1.1 804,254 - -2.3 804,254 - +0.5 804,254 - +0.3 804,255 + +0.7 804,255 + +0.3 804,264 - +0.8 804,297 + -1.7 804,309 - -0.9 804,314 + -1.1 804,314 + -1.7 804,314 + -0.2 804,315 - +1.0 804,336 - +1.3 804,343 - +1.1 804,378 - -0.7 804,477 - +1.2 804,479 - +0.4 804,479 - -0.9 804,495 + +1.1 804,505 + +0.6 804,583 + +0.2
Or see this region's nucleotide sequence