Experiment: no P control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02980 and HMPREF1058_RS02975 are separated by 2 nucleotides HMPREF1058_RS02975 and HMPREF1058_RS02970 are separated by 21 nucleotides HMPREF1058_RS02970 and HMPREF1058_RS02965 are separated by 228 nucleotides
HMPREF1058_RS02980: HMPREF1058_RS02980 - hypothetical protein, at 39,679 to 41,346
_RS02980
HMPREF1058_RS02975: HMPREF1058_RS02975 - hypothetical protein, at 41,349 to 41,645
_RS02975
HMPREF1058_RS02970: HMPREF1058_RS02970 - DNA mismatch repair endonuclease MutL, at 41,667 to 43,535
_RS02970
HMPREF1058_RS02965: HMPREF1058_RS02965 - BamA/TamA family outer membrane protein, at 43,764 to 44,972
_RS02965
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 41.344 kb on + strand at 41.396 kb on + strand, within HMPREF1058_RS02975 at 41.396 kb on + strand, within HMPREF1058_RS02975 at 41.664 kb on + strand at 41.664 kb on + strand at 41.666 kb on + strand at 42.837 kb on + strand, within HMPREF1058_RS02970 at 42.895 kb on - strand, within HMPREF1058_RS02970 at 42.939 kb on + strand, within HMPREF1058_RS02970 at 42.940 kb on - strand, within HMPREF1058_RS02970 at 42.940 kb on - strand, within HMPREF1058_RS02970 at 43.072 kb on + strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.085 kb on + strand, within HMPREF1058_RS02970 at 43.085 kb on + strand, within HMPREF1058_RS02970 at 43.087 kb on + strand, within HMPREF1058_RS02970 at 43.336 kb on + strand, within HMPREF1058_RS02970 at 43.467 kb on + strand at 43.570 kb on + strand at 43.759 kb on - strand at 43.761 kb on + strand at 43.762 kb on - strand at 43.772 kb on - strand at 43.778 kb on - strand at 43.778 kb on - strand at 43.837 kb on + strand at 43.838 kb on - strand at 43.838 kb on - strand at 43.838 kb on - strand at 43.916 kb on + strand, within HMPREF1058_RS02965 at 43.918 kb on + strand, within HMPREF1058_RS02965 at 43.919 kb on - strand, within HMPREF1058_RS02965 at 43.924 kb on - strand, within HMPREF1058_RS02965 at 43.925 kb on + strand, within HMPREF1058_RS02965 at 43.926 kb on - strand, within HMPREF1058_RS02965 at 43.926 kb on - strand, within HMPREF1058_RS02965 at 43.930 kb on + strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.979 kb on + strand, within HMPREF1058_RS02965 at 43.980 kb on - strand, within HMPREF1058_RS02965 at 43.980 kb on - strand, within HMPREF1058_RS02965 at 43.991 kb on + strand, within HMPREF1058_RS02965 at 43.992 kb on - strand at 44.150 kb on + strand, within HMPREF1058_RS02965 at 44.190 kb on - strand, within HMPREF1058_RS02965 at 44.230 kb on - strand, within HMPREF1058_RS02965 at 44.431 kb on - strand, within HMPREF1058_RS02965 at 44.431 kb on - strand, within HMPREF1058_RS02965 at 44.460 kb on + strand, within HMPREF1058_RS02965 at 44.463 kb on - strand, within HMPREF1058_RS02965 at 44.473 kb on - strand, within HMPREF1058_RS02965 at 44.496 kb on + strand, within HMPREF1058_RS02965 at 44.520 kb on - strand, within HMPREF1058_RS02965 at 44.522 kb on + strand, within HMPREF1058_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction no P control remove 41,344 + -0.6 41,396 + HMPREF1058_RS02975 0.16 +1.1 41,396 + HMPREF1058_RS02975 0.16 +0.6 41,664 + +0.9 41,664 + +2.3 41,666 + -0.1 42,837 + HMPREF1058_RS02970 0.63 -1.0 42,895 - HMPREF1058_RS02970 0.66 +1.6 42,939 + HMPREF1058_RS02970 0.68 +2.0 42,940 - HMPREF1058_RS02970 0.68 -1.9 42,940 - HMPREF1058_RS02970 0.68 +3.2 43,072 + HMPREF1058_RS02970 0.75 -1.0 43,084 - HMPREF1058_RS02970 0.76 +1.5 43,084 - HMPREF1058_RS02970 0.76 +5.5 43,084 - HMPREF1058_RS02970 0.76 +1.3 43,085 + HMPREF1058_RS02970 0.76 -1.0 43,085 + HMPREF1058_RS02970 0.76 -0.4 43,087 + HMPREF1058_RS02970 0.76 +0.9 43,336 + HMPREF1058_RS02970 0.89 +0.1 43,467 + -2.1 43,570 + -2.4 43,759 - -0.7 43,761 + +0.9 43,762 - -1.0 43,772 - +0.8 43,778 - -1.3 43,778 - -0.6 43,837 + -0.1 43,838 - +2.0 43,838 - +0.6 43,838 - +0.4 43,916 + HMPREF1058_RS02965 0.13 -0.7 43,918 + HMPREF1058_RS02965 0.13 -1.3 43,919 - HMPREF1058_RS02965 0.13 +2.0 43,924 - HMPREF1058_RS02965 0.13 +0.8 43,925 + HMPREF1058_RS02965 0.13 +0.1 43,926 - HMPREF1058_RS02965 0.13 +0.7 43,926 - HMPREF1058_RS02965 0.13 +0.4 43,930 + HMPREF1058_RS02965 0.14 +0.9 43,950 - HMPREF1058_RS02965 0.15 -0.8 43,950 - HMPREF1058_RS02965 0.15 +0.0 43,950 - HMPREF1058_RS02965 0.15 +0.1 43,979 + HMPREF1058_RS02965 0.18 -0.6 43,980 - HMPREF1058_RS02965 0.18 +0.2 43,980 - HMPREF1058_RS02965 0.18 -2.0 43,991 + HMPREF1058_RS02965 0.19 +1.2 43,992 - -1.1 44,150 + HMPREF1058_RS02965 0.32 -0.4 44,190 - HMPREF1058_RS02965 0.35 +1.1 44,230 - HMPREF1058_RS02965 0.39 +0.1 44,431 - HMPREF1058_RS02965 0.55 -0.7 44,431 - HMPREF1058_RS02965 0.55 +0.9 44,460 + HMPREF1058_RS02965 0.58 -0.8 44,463 - HMPREF1058_RS02965 0.58 -0.9 44,473 - HMPREF1058_RS02965 0.59 -1.1 44,496 + HMPREF1058_RS02965 0.61 -0.2 44,520 - HMPREF1058_RS02965 0.63 -0.3 44,522 + HMPREF1058_RS02965 0.63 -0.2
Or see this region's nucleotide sequence