Experiment: 2-Deoxycytidine 5-monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11405 and HMPREF1058_RS11400 are separated by 79 nucleotides HMPREF1058_RS11400 and HMPREF1058_RS11395 are separated by 14 nucleotides HMPREF1058_RS11395 and HMPREF1058_RS11390 overlap by 4 nucleotides HMPREF1058_RS11390 and HMPREF1058_RS11385 are separated by 102 nucleotides
HMPREF1058_RS11405: HMPREF1058_RS11405 - tyrosine--tRNA ligase, at 388,492 to 389,784
_RS11405
HMPREF1058_RS11400: HMPREF1058_RS11400 - TatD family hydrolase, at 389,864 to 390,493
_RS11400
HMPREF1058_RS11395: HMPREF1058_RS11395 - membrane protein insertion efficiency factor YidD, at 390,508 to 390,729
_RS11395
HMPREF1058_RS11390: HMPREF1058_RS11390 - ribonuclease P protein component, at 390,726 to 391,118
_RS11390
HMPREF1058_RS11385: HMPREF1058_RS11385 - uroporphyrinogen-III synthase, at 391,221 to 391,970
_RS11385
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 389.802 kb on - strand at 389.847 kb on - strand at 389.900 kb on + strand at 389.901 kb on - strand at 389.954 kb on + strand, within HMPREF1058_RS11400 at 389.954 kb on + strand, within HMPREF1058_RS11400 at 390.091 kb on + strand, within HMPREF1058_RS11400 at 390.100 kb on + strand, within HMPREF1058_RS11400 at 390.141 kb on + strand, within HMPREF1058_RS11400 at 390.259 kb on + strand, within HMPREF1058_RS11400 at 390.393 kb on + strand, within HMPREF1058_RS11400 at 390.393 kb on + strand, within HMPREF1058_RS11400 at 390.394 kb on - strand, within HMPREF1058_RS11400 at 390.396 kb on + strand, within HMPREF1058_RS11400 at 390.493 kb on + strand at 390.494 kb on - strand at 390.634 kb on - strand, within HMPREF1058_RS11395 at 390.638 kb on - strand, within HMPREF1058_RS11395 at 390.719 kb on - strand at 391.181 kb on - strand at 391.211 kb on - strand at 391.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycytidine 5-monophosphate 1 mM phosphorus source remove 389,802 - -0.2 389,847 - +0.0 389,900 + -0.4 389,901 - -1.9 389,954 + HMPREF1058_RS11400 0.14 -0.7 389,954 + HMPREF1058_RS11400 0.14 +0.9 390,091 + HMPREF1058_RS11400 0.36 +2.8 390,100 + HMPREF1058_RS11400 0.37 -0.3 390,141 + HMPREF1058_RS11400 0.44 -0.4 390,259 + HMPREF1058_RS11400 0.63 -0.5 390,393 + HMPREF1058_RS11400 0.84 +0.8 390,393 + HMPREF1058_RS11400 0.84 +0.9 390,394 - HMPREF1058_RS11400 0.84 +0.2 390,396 + HMPREF1058_RS11400 0.84 -0.6 390,493 + +1.7 390,494 - -0.9 390,634 - HMPREF1058_RS11395 0.57 -1.8 390,638 - HMPREF1058_RS11395 0.59 +1.7 390,719 - -0.6 391,181 - -1.3 391,211 - -0.3 391,211 - -0.1
Or see this region's nucleotide sequence