Experiment: DNA from Salmon 1 mg/mL phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09880 and HMPREF1058_RS09875 are separated by 201 nucleotides HMPREF1058_RS09875 and HMPREF1058_RS09870 overlap by 4 nucleotides HMPREF1058_RS09870 and HMPREF1058_RS09865 are separated by 19 nucleotides HMPREF1058_RS09865 and HMPREF1058_RS09860 are separated by 2 nucleotides HMPREF1058_RS09860 and HMPREF1058_RS09855 are separated by 2 nucleotides
HMPREF1058_RS09880: HMPREF1058_RS09880 - DUF4134 domain-containing protein, at 768,234 to 768,545
_RS09880
HMPREF1058_RS09875: HMPREF1058_RS09875 - hypothetical protein, at 768,747 to 769,466
_RS09875
HMPREF1058_RS09870: HMPREF1058_RS09870 - DUF3408 domain-containing protein, at 769,463 to 769,705
_RS09870
HMPREF1058_RS09865: HMPREF1058_RS09865 - DUF3408 domain-containing protein, at 769,725 to 770,072
_RS09865
HMPREF1058_RS09860: HMPREF1058_RS09860 - DUF3408 domain-containing protein, at 770,075 to 770,515
_RS09860
HMPREF1058_RS09855: HMPREF1058_RS09855 - ParA family protein, at 770,518 to 771,567
_RS09855
Position (kb) 769
770 Strain fitness (log2 ratio) -2
-1
0
1 at 768.501 kb on - strand, within HMPREF1058_RS09880 at 768.750 kb on + strand at 769.466 kb on + strand at 769.466 kb on + strand at 769.466 kb on + strand at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.583 kb on + strand, within HMPREF1058_RS09870 at 769.629 kb on + strand, within HMPREF1058_RS09870 at 769.891 kb on + strand, within HMPREF1058_RS09865 at 769.891 kb on + strand, within HMPREF1058_RS09865 at 770.292 kb on + strand, within HMPREF1058_RS09860 at 770.427 kb on + strand, within HMPREF1058_RS09860 at 770.519 kb on + strand at 770.542 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DNA from Salmon 1 mg/mL phosphorus source remove 768,501 - HMPREF1058_RS09880 0.86 +1.1 768,750 + +0.4 769,466 + +0.2 769,466 + -0.3 769,466 + +0.8 769,495 + HMPREF1058_RS09870 0.13 -0.1 769,495 + HMPREF1058_RS09870 0.13 -0.6 769,495 + HMPREF1058_RS09870 0.13 -2.1 769,495 + HMPREF1058_RS09870 0.13 -0.2 769,583 + HMPREF1058_RS09870 0.49 -0.6 769,629 + HMPREF1058_RS09870 0.68 -0.9 769,891 + HMPREF1058_RS09865 0.48 +0.5 769,891 + HMPREF1058_RS09865 0.48 -0.2 770,292 + HMPREF1058_RS09860 0.49 +0.4 770,427 + HMPREF1058_RS09860 0.80 +0.3 770,519 + -1.0 770,542 + -0.2
Or see this region's nucleotide sequence