Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27215

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27210 and AO353_27215 are separated by 413 nucleotidesAO353_27215 and AO353_27220 are separated by 261 nucleotides AO353_27210: AO353_27210 - hypothetical protein, at 5,951,601 to 5,952,761 _27210 AO353_27215: AO353_27215 - hypothetical protein, at 5,953,175 to 5,953,390 _27215 AO353_27220: AO353_27220 - hypothetical protein, at 5,953,652 to 5,954,614 _27220 Position (kb) 5953 5954Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5952.400 kb on - strand, within AO353_27210at 5952.420 kb on - strandat 5952.420 kb on - strand, within AO353_27210at 5952.420 kb on - strand, within AO353_27210at 5952.444 kb on + strand, within AO353_27210at 5952.444 kb on + strand, within AO353_27210at 5952.445 kb on - strand, within AO353_27210at 5952.445 kb on - strand, within AO353_27210at 5952.445 kb on - strand, within AO353_27210at 5952.476 kb on + strand, within AO353_27210at 5952.540 kb on + strand, within AO353_27210at 5952.541 kb on - strand, within AO353_27210at 5952.541 kb on - strand, within AO353_27210at 5952.624 kb on - strand, within AO353_27210at 5952.674 kb on + strandat 5952.725 kb on + strandat 5952.726 kb on - strandat 5952.755 kb on + strandat 5952.755 kb on + strandat 5952.755 kb on + strandat 5952.755 kb on + strandat 5952.761 kb on + strandat 5952.761 kb on + strandat 5952.761 kb on + strandat 5952.761 kb on + strandat 5952.762 kb on - strandat 5952.762 kb on - strandat 5952.811 kb on + strandat 5952.811 kb on + strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.818 kb on + strandat 5952.818 kb on + strandat 5952.818 kb on + strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.825 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.960 kb on - strandat 5953.030 kb on + strandat 5953.089 kb on - strandat 5953.098 kb on + strandat 5953.113 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.187 kb on + strandat 5953.203 kb on + strand, within AO353_27215at 5953.204 kb on - strand, within AO353_27215at 5953.204 kb on - strand, within AO353_27215at 5953.217 kb on + strand, within AO353_27215at 5953.217 kb on + strand, within AO353_27215at 5953.217 kb on + strand, within AO353_27215at 5953.218 kb on - strand, within AO353_27215at 5953.491 kb on + strandat 5953.492 kb on - strandat 5953.506 kb on + strandat 5953.561 kb on + strandat 5953.608 kb on - strandat 5953.608 kb on - strandat 5953.630 kb on - strandat 5953.757 kb on - strand, within AO353_27220at 5953.763 kb on - strand, within AO353_27220at 5953.815 kb on - strand, within AO353_27220at 5953.863 kb on + strand, within AO353_27220at 5953.864 kb on - strand, within AO353_27220at 5953.977 kb on + strand, within AO353_27220at 5954.014 kb on + strand, within AO353_27220at 5954.164 kb on + strand, within AO353_27220at 5954.320 kb on - strand, within AO353_27220at 5954.320 kb on - strand, within AO353_27220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
5,952,400 - AO353_27210 0.69 -0.6
5,952,420 - -1.6
5,952,420 - AO353_27210 0.71 -0.5
5,952,420 - AO353_27210 0.71 -1.7
5,952,444 + AO353_27210 0.73 +0.7
5,952,444 + AO353_27210 0.73 +0.6
5,952,445 - AO353_27210 0.73 -1.4
5,952,445 - AO353_27210 0.73 +0.3
5,952,445 - AO353_27210 0.73 -2.4
5,952,476 + AO353_27210 0.75 -0.1
5,952,540 + AO353_27210 0.81 +1.2
5,952,541 - AO353_27210 0.81 -1.4
5,952,541 - AO353_27210 0.81 -2.3
5,952,624 - AO353_27210 0.88 -0.1
5,952,674 + -1.9
5,952,725 + -2.3
5,952,726 - +1.2
5,952,755 + -1.1
5,952,755 + -2.3
5,952,755 + -1.4
5,952,755 + +0.1
5,952,761 + -1.1
5,952,761 + +1.5
5,952,761 + +0.3
5,952,761 + -1.1
5,952,762 - +0.2
5,952,762 - -0.5
5,952,811 + +1.4
5,952,811 + -0.1
5,952,812 - +0.3
5,952,812 - +1.1
5,952,812 - -0.3
5,952,812 - -1.6
5,952,812 - +1.6
5,952,814 + +0.6
5,952,814 + +0.3
5,952,814 + +0.6
5,952,814 + +0.7
5,952,814 + -0.6
5,952,815 - +0.7
5,952,815 - -0.9
5,952,815 - -1.1
5,952,815 - +0.1
5,952,815 - +0.1
5,952,815 - -1.4
5,952,818 + -0.2
5,952,818 + +0.0
5,952,818 + -1.1
5,952,819 - -0.3
5,952,819 - +0.0
5,952,819 - +0.8
5,952,819 - -0.5
5,952,819 - +1.8
5,952,825 + -1.9
5,952,851 + -2.6
5,952,851 + -0.3
5,952,851 + +0.9
5,952,851 + -0.2
5,952,851 + -0.6
5,952,851 + +0.0
5,952,960 - -2.4
5,953,030 + -0.1
5,953,089 - +0.4
5,953,098 + -0.1
5,953,113 + +1.6
5,953,140 + -1.2
5,953,140 + -0.6
5,953,140 + -2.3
5,953,140 + +0.4
5,953,140 + +1.4
5,953,140 + +0.5
5,953,140 + +1.8
5,953,140 + -1.1
5,953,140 + -1.6
5,953,140 + +0.6
5,953,140 + +2.0
5,953,140 + +1.4
5,953,141 - -0.6
5,953,141 - -2.4
5,953,141 - +0.7
5,953,141 - -3.0
5,953,141 - -1.6
5,953,141 - -1.7
5,953,141 - +1.9
5,953,141 - +0.9
5,953,141 - -0.3
5,953,141 - -1.4
5,953,141 - +0.2
5,953,141 - -0.1
5,953,141 - +2.8
5,953,141 - +0.3
5,953,187 + +0.1
5,953,203 + AO353_27215 0.13 -0.6
5,953,204 - AO353_27215 0.13 -0.3
5,953,204 - AO353_27215 0.13 -1.4
5,953,217 + AO353_27215 0.19 -0.8
5,953,217 + AO353_27215 0.19 -0.1
5,953,217 + AO353_27215 0.19 -1.7
5,953,218 - AO353_27215 0.20 -1.4
5,953,491 + +2.6
5,953,492 - -1.7
5,953,506 + -1.0
5,953,561 + -2.1
5,953,608 - -0.9
5,953,608 - -0.0
5,953,630 - -0.7
5,953,757 - AO353_27220 0.11 -1.4
5,953,763 - AO353_27220 0.12 -1.7
5,953,815 - AO353_27220 0.17 +1.1
5,953,863 + AO353_27220 0.22 -2.8
5,953,864 - AO353_27220 0.22 +0.4
5,953,977 + AO353_27220 0.34 -0.2
5,954,014 + AO353_27220 0.38 +1.1
5,954,164 + AO353_27220 0.53 -0.4
5,954,320 - AO353_27220 0.69 -0.1
5,954,320 - AO353_27220 0.69 -1.6

Or see this region's nucleotide sequence