Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25260

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25255 and AO353_25260 are separated by 15 nucleotidesAO353_25260 and AO353_25265 are separated by 112 nucleotides AO353_25255: AO353_25255 - large subunit of pyruvate transporter (CstA) (from data), at 5,570,728 to 5,572,785 _25255 AO353_25260: AO353_25260 - hypothetical protein, at 5,572,801 to 5,572,998 _25260 AO353_25265: AO353_25265 - chemotaxis protein, at 5,573,111 to 5,574,730 _25265 Position (kb) 5572 5573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5571.895 kb on + strand, within AO353_25255at 5571.941 kb on + strand, within AO353_25255at 5571.942 kb on - strand, within AO353_25255at 5571.982 kb on - strand, within AO353_25255at 5572.407 kb on + strand, within AO353_25255at 5572.445 kb on - strand, within AO353_25255at 5572.445 kb on - strand, within AO353_25255at 5572.445 kb on - strand, within AO353_25255at 5572.562 kb on - strand, within AO353_25255at 5572.562 kb on - strand, within AO353_25255at 5572.562 kb on - strand, within AO353_25255at 5572.784 kb on - strandat 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.882 kb on + strand, within AO353_25260at 5572.930 kb on + strand, within AO353_25260at 5572.930 kb on + strand, within AO353_25260at 5572.931 kb on - strand, within AO353_25260at 5572.931 kb on - strand, within AO353_25260at 5573.113 kb on - strandat 5573.185 kb on + strandat 5573.185 kb on + strandat 5573.222 kb on - strandat 5573.389 kb on - strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.633 kb on + strand, within AO353_25265at 5573.634 kb on - strand, within AO353_25265

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,571,895 + AO353_25255 0.57 +1.8
5,571,941 + AO353_25255 0.59 -1.4
5,571,942 - AO353_25255 0.59 +0.4
5,571,982 - AO353_25255 0.61 +0.4
5,572,407 + AO353_25255 0.82 -2.9
5,572,445 - AO353_25255 0.83 +1.7
5,572,445 - AO353_25255 0.83 -1.4
5,572,445 - AO353_25255 0.83 -0.6
5,572,562 - AO353_25255 0.89 +1.4
5,572,562 - AO353_25255 0.89 +2.0
5,572,562 - AO353_25255 0.89 +0.5
5,572,784 - +1.0
5,572,882 + AO353_25260 0.41 +0.7
5,572,882 + AO353_25260 0.41 -1.3
5,572,882 + AO353_25260 0.41 -1.0
5,572,882 + AO353_25260 0.41 -1.4
5,572,882 + AO353_25260 0.41 -1.4
5,572,930 + AO353_25260 0.65 -0.3
5,572,930 + AO353_25260 0.65 -1.0
5,572,931 - AO353_25260 0.66 -1.9
5,572,931 - AO353_25260 0.66 -0.3
5,573,113 - -0.8
5,573,185 + -0.2
5,573,185 + -1.2
5,573,222 - -1.8
5,573,389 - AO353_25265 0.17 -1.6
5,573,633 + AO353_25265 0.32 -0.7
5,573,633 + AO353_25265 0.32 +0.2
5,573,633 + AO353_25265 0.32 -2.4
5,573,633 + AO353_25265 0.32 -0.5
5,573,634 - AO353_25265 0.32 -1.8

Or see this region's nucleotide sequence