Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25150

Experiment: L-Citrulline

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_25145 and AO353_25150 are separated by 60 nucleotidesAO353_25150 and AO353_25155 overlap by 4 nucleotides AO353_25145: AO353_25145 - butanediol dehydrogenase, at 5,547,005 to 5,548,099 _25145 AO353_25150: AO353_25150 - acetoin dehydrogenase, at 5,548,160 to 5,549,272 _25150 AO353_25155: AO353_25155 - pyruvate dehydrogenase, at 5,549,269 to 5,550,288 _25155 Position (kb) 5548 5549 5550Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5547.176 kb on - strand, within AO353_25145at 5547.177 kb on + strand, within AO353_25145at 5547.178 kb on - strand, within AO353_25145at 5547.212 kb on + strand, within AO353_25145at 5547.212 kb on + strand, within AO353_25145at 5547.213 kb on - strand, within AO353_25145at 5547.213 kb on - strand, within AO353_25145at 5547.372 kb on - strand, within AO353_25145at 5547.539 kb on + strand, within AO353_25145at 5547.540 kb on - strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.649 kb on - strand, within AO353_25145at 5547.649 kb on - strand, within AO353_25145at 5547.649 kb on - strand, within AO353_25145at 5547.694 kb on + strand, within AO353_25145at 5547.694 kb on + strand, within AO353_25145at 5547.735 kb on + strand, within AO353_25145at 5547.735 kb on + strand, within AO353_25145at 5547.735 kb on + strand, within AO353_25145at 5547.736 kb on - strand, within AO353_25145at 5547.736 kb on - strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.754 kb on - strand, within AO353_25145at 5547.754 kb on - strand, within AO353_25145at 5547.754 kb on - strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.757 kb on - strand, within AO353_25145at 5547.757 kb on - strand, within AO353_25145at 5547.757 kb on - strand, within AO353_25145at 5547.936 kb on + strand, within AO353_25145at 5547.936 kb on + strand, within AO353_25145at 5547.936 kb on + strand, within AO353_25145at 5547.936 kb on + strand, within AO353_25145at 5547.937 kb on - strand, within AO353_25145at 5547.937 kb on - strand, within AO353_25145at 5547.937 kb on - strand, within AO353_25145at 5547.937 kb on - strand, within AO353_25145at 5548.007 kb on + strandat 5548.069 kb on + strandat 5548.118 kb on + strandat 5548.118 kb on + strandat 5548.119 kb on - strandat 5548.119 kb on - strandat 5548.119 kb on - strandat 5548.119 kb on - strandat 5548.172 kb on + strandat 5548.172 kb on + strandat 5548.173 kb on - strandat 5548.173 kb on - strandat 5548.173 kb on - strandat 5548.434 kb on + strand, within AO353_25150at 5548.434 kb on + strand, within AO353_25150at 5548.434 kb on + strand, within AO353_25150at 5548.434 kb on + strandat 5548.435 kb on - strand, within AO353_25150at 5548.435 kb on - strand, within AO353_25150at 5548.549 kb on - strand, within AO353_25150at 5548.549 kb on - strand, within AO353_25150at 5548.712 kb on + strand, within AO353_25150at 5548.713 kb on - strand, within AO353_25150at 5548.757 kb on - strand, within AO353_25150at 5548.834 kb on + strand, within AO353_25150at 5548.835 kb on - strand, within AO353_25150at 5548.899 kb on + strandat 5549.258 kb on - strandat 5549.258 kb on - strandat 5549.258 kb on - strandat 5549.258 kb on - strandat 5549.336 kb on + strandat 5549.336 kb on + strandat 5549.336 kb on + strandat 5549.336 kb on + strandat 5549.337 kb on - strandat 5549.337 kb on - strandat 5549.337 kb on - strandat 5549.337 kb on - strandat 5549.374 kb on - strand, within AO353_25155at 5549.374 kb on - strand, within AO353_25155at 5549.445 kb on + strand, within AO353_25155at 5549.445 kb on + strand, within AO353_25155at 5549.445 kb on + strand, within AO353_25155at 5549.488 kb on + strand, within AO353_25155at 5549.489 kb on - strand, within AO353_25155at 5549.523 kb on + strand, within AO353_25155at 5549.523 kb on + strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.524 kb on - strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.633 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.694 kb on + strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.695 kb on - strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.696 kb on + strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.697 kb on - strand, within AO353_25155at 5549.710 kb on + strand, within AO353_25155at 5549.711 kb on - strand, within AO353_25155at 5549.729 kb on + strand, within AO353_25155at 5549.729 kb on + strand, within AO353_25155at 5549.784 kb on + strand, within AO353_25155at 5549.951 kb on + strand, within AO353_25155at 5550.026 kb on - strand, within AO353_25155at 5550.026 kb on - strand, within AO353_25155at 5550.071 kb on + strand, within AO353_25155at 5550.122 kb on + strand, within AO353_25155at 5550.123 kb on - strand, within AO353_25155at 5550.269 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
remove
5,547,176 - AO353_25145 0.16 -1.8
5,547,177 + AO353_25145 0.16 -2.6
5,547,178 - AO353_25145 0.16 -0.2
5,547,212 + AO353_25145 0.19 -2.1
5,547,212 + AO353_25145 0.19 +0.1
5,547,213 - AO353_25145 0.19 -2.6
5,547,213 - AO353_25145 0.19 -1.5
5,547,372 - AO353_25145 0.34 -2.0
5,547,539 + AO353_25145 0.49 -2.4
5,547,540 - AO353_25145 0.49 -1.2
5,547,648 + AO353_25145 0.59 -1.6
5,547,648 + AO353_25145 0.59 +1.0
5,547,648 + AO353_25145 0.59 -1.0
5,547,648 + AO353_25145 0.59 -0.4
5,547,648 + AO353_25145 0.59 -1.5
5,547,648 + AO353_25145 0.59 +1.2
5,547,648 + AO353_25145 0.59 -0.1
5,547,648 + AO353_25145 0.59 +0.8
5,547,649 - AO353_25145 0.59 +0.1
5,547,649 - AO353_25145 0.59 +3.3
5,547,649 - AO353_25145 0.59 +3.4
5,547,694 + AO353_25145 0.63 -0.4
5,547,694 + AO353_25145 0.63 +1.2
5,547,735 + AO353_25145 0.67 -0.2
5,547,735 + AO353_25145 0.67 +1.6
5,547,735 + AO353_25145 0.67 +1.6
5,547,736 - AO353_25145 0.67 -2.0
5,547,736 - AO353_25145 0.67 +1.0
5,547,753 + AO353_25145 0.68 +1.2
5,547,753 + AO353_25145 0.68 +0.7
5,547,753 + AO353_25145 0.68 +1.8
5,547,753 + AO353_25145 0.68 -0.1
5,547,753 + AO353_25145 0.68 -1.1
5,547,753 + AO353_25145 0.68 -1.5
5,547,754 - AO353_25145 0.68 +0.5
5,547,754 - AO353_25145 0.68 -1.5
5,547,754 - AO353_25145 0.68 -2.7
5,547,756 + AO353_25145 0.69 +0.4
5,547,756 + AO353_25145 0.69 +0.7
5,547,756 + AO353_25145 0.69 -2.5
5,547,756 + AO353_25145 0.69 +0.1
5,547,756 + AO353_25145 0.69 -0.4
5,547,757 - AO353_25145 0.69 -0.5
5,547,757 - AO353_25145 0.69 +1.8
5,547,757 - AO353_25145 0.69 +1.1
5,547,936 + AO353_25145 0.85 +1.3
5,547,936 + AO353_25145 0.85 -1.4
5,547,936 + AO353_25145 0.85 -0.7
5,547,936 + AO353_25145 0.85 +1.8
5,547,937 - AO353_25145 0.85 -0.8
5,547,937 - AO353_25145 0.85 -1.5
5,547,937 - AO353_25145 0.85 +0.0
5,547,937 - AO353_25145 0.85 -0.5
5,548,007 + +0.4
5,548,069 + +3.5
5,548,118 + -1.2
5,548,118 + -2.6
5,548,119 - -1.4
5,548,119 - +1.5
5,548,119 - -2.5
5,548,119 - -0.8
5,548,172 + -0.5
5,548,172 + -0.6
5,548,173 - -0.6
5,548,173 - -0.8
5,548,173 - +0.2
5,548,434 + AO353_25150 0.25 -1.5
5,548,434 + AO353_25150 0.25 +1.5
5,548,434 + AO353_25150 0.25 +1.3
5,548,434 + +0.0
5,548,435 - AO353_25150 0.25 -0.2
5,548,435 - AO353_25150 0.25 +0.1
5,548,549 - AO353_25150 0.35 -1.5
5,548,549 - AO353_25150 0.35 +0.2
5,548,712 + AO353_25150 0.50 +2.3
5,548,713 - AO353_25150 0.50 +1.3
5,548,757 - AO353_25150 0.54 +0.6
5,548,834 + AO353_25150 0.61 +1.9
5,548,835 - AO353_25150 0.61 +0.2
5,548,899 + -0.2
5,549,258 - -1.4
5,549,258 - -1.5
5,549,258 - -0.8
5,549,258 - -0.3
5,549,336 + -1.8
5,549,336 + -0.1
5,549,336 + +0.1
5,549,336 + -1.2
5,549,337 - +3.4
5,549,337 - -2.1
5,549,337 - +1.7
5,549,337 - +1.3
5,549,374 - AO353_25155 0.10 +0.0
5,549,374 - AO353_25155 0.10 +0.5
5,549,445 + AO353_25155 0.17 -0.8
5,549,445 + AO353_25155 0.17 +0.5
5,549,445 + AO353_25155 0.17 -1.0
5,549,488 + AO353_25155 0.21 -0.3
5,549,489 - AO353_25155 0.22 -1.7
5,549,523 + AO353_25155 0.25 +0.7
5,549,523 + AO353_25155 0.25 +1.8
5,549,524 - AO353_25155 0.25 -2.0
5,549,524 - AO353_25155 0.25 -0.2
5,549,524 - AO353_25155 0.25 -2.0
5,549,524 - AO353_25155 0.25 +0.2
5,549,633 + AO353_25155 0.36 +0.4
5,549,633 + AO353_25155 0.36 +1.8
5,549,633 + AO353_25155 0.36 -1.2
5,549,633 + AO353_25155 0.36 +0.9
5,549,694 + AO353_25155 0.42 -0.8
5,549,694 + AO353_25155 0.42 +1.8
5,549,694 + AO353_25155 0.42 +4.0
5,549,694 + AO353_25155 0.42 +1.8
5,549,695 - AO353_25155 0.42 -0.4
5,549,695 - AO353_25155 0.42 -2.5
5,549,695 - AO353_25155 0.42 -1.7
5,549,695 - AO353_25155 0.42 -0.5
5,549,695 - AO353_25155 0.42 -2.8
5,549,696 + AO353_25155 0.42 +0.0
5,549,696 + AO353_25155 0.42 -1.5
5,549,696 + AO353_25155 0.42 +1.1
5,549,696 + AO353_25155 0.42 +1.7
5,549,696 + AO353_25155 0.42 -0.2
5,549,697 - AO353_25155 0.42 -1.8
5,549,697 - AO353_25155 0.42 +0.7
5,549,697 - AO353_25155 0.42 +0.1
5,549,697 - AO353_25155 0.42 +3.3
5,549,697 - AO353_25155 0.42 +1.0
5,549,710 + AO353_25155 0.43 +0.2
5,549,711 - AO353_25155 0.43 +1.1
5,549,729 + AO353_25155 0.45 -1.1
5,549,729 + AO353_25155 0.45 -2.3
5,549,784 + AO353_25155 0.50 -1.1
5,549,951 + AO353_25155 0.67 +0.2
5,550,026 - AO353_25155 0.74 -1.9
5,550,026 - AO353_25155 0.74 -3.2
5,550,071 + AO353_25155 0.79 -1.2
5,550,122 + AO353_25155 0.84 +0.4
5,550,123 - AO353_25155 0.84 +0.5
5,550,269 + -1.7

Or see this region's nucleotide sequence