Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01075

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01070 and AO353_01075 are separated by 50 nucleotidesAO353_01075 and AO353_01080 are separated by 221 nucleotidesAO353_01080 and AO353_01085 are separated by 90 nucleotides AO353_01070: AO353_01070 - poly(R)-hydroxyalkanoic acid synthase, at 235,687 to 237,390 _01070 AO353_01075: AO353_01075 - hypothetical protein, at 237,441 to 237,707 _01075 AO353_01080: AO353_01080 - hypothetical protein, at 237,929 to 238,558 _01080 AO353_01085: AO353_01085 - methionyl-tRNA formyltransferase, at 238,649 to 239,251 _01085 Position (kb) 237 238Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 236.447 kb on + strand, within AO353_01070at 236.447 kb on + strand, within AO353_01070at 236.686 kb on + strand, within AO353_01070at 236.686 kb on + strand, within AO353_01070at 236.687 kb on - strand, within AO353_01070at 236.687 kb on - strand, within AO353_01070at 236.687 kb on - strand, within AO353_01070at 236.805 kb on + strand, within AO353_01070at 236.805 kb on + strand, within AO353_01070at 236.805 kb on + strandat 236.805 kb on + strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strand, within AO353_01070at 236.806 kb on - strandat 236.845 kb on + strand, within AO353_01070at 236.845 kb on + strand, within AO353_01070at 236.845 kb on + strand, within AO353_01070at 236.846 kb on - strandat 236.846 kb on - strand, within AO353_01070at 236.846 kb on - strand, within AO353_01070at 236.846 kb on - strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strand, within AO353_01070at 236.860 kb on + strandat 236.861 kb on - strand, within AO353_01070at 236.861 kb on - strand, within AO353_01070at 236.861 kb on - strand, within AO353_01070at 236.861 kb on - strand, within AO353_01070at 236.861 kb on - strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.938 kb on + strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.939 kb on - strand, within AO353_01070at 236.947 kb on + strand, within AO353_01070at 236.948 kb on - strand, within AO353_01070at 236.948 kb on - strand, within AO353_01070at 236.948 kb on - strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.962 kb on + strand, within AO353_01070at 236.963 kb on - strand, within AO353_01070at 236.963 kb on - strand, within AO353_01070at 236.963 kb on - strand, within AO353_01070at 237.043 kb on + strand, within AO353_01070at 237.043 kb on + strand, within AO353_01070at 237.043 kb on + strand, within AO353_01070at 237.043 kb on + strand, within AO353_01070at 237.043 kb on + strand, within AO353_01070at 237.043 kb on + strand, within AO353_01070at 237.043 kb on + strand, within AO353_01070at 237.044 kb on - strand, within AO353_01070at 237.131 kb on + strand, within AO353_01070at 237.131 kb on + strand, within AO353_01070at 237.132 kb on - strand, within AO353_01070at 237.150 kb on + strand, within AO353_01070at 237.151 kb on - strandat 237.194 kb on - strand, within AO353_01070at 237.376 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.376 kb on + strandat 237.377 kb on - strandat 237.377 kb on - strandat 237.377 kb on - strandat 237.377 kb on - strandat 237.377 kb on - strandat 237.377 kb on - strandat 237.377 kb on - strandat 237.380 kb on + strandat 237.380 kb on + strandat 237.380 kb on + strandat 237.380 kb on + strandat 237.380 kb on + strandat 237.380 kb on + strandat 237.381 kb on - strandat 237.381 kb on - strandat 237.381 kb on - strandat 237.381 kb on - strandat 237.406 kb on + strandat 237.406 kb on + strandat 237.406 kb on + strandat 237.406 kb on + strandat 237.406 kb on + strandat 237.406 kb on + strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.407 kb on - strandat 237.423 kb on + strandat 237.578 kb on + strand, within AO353_01075at 237.578 kb on + strand, within AO353_01075at 237.578 kb on + strand, within AO353_01075at 237.578 kb on + strand, within AO353_01075at 237.578 kb on + strand, within AO353_01075at 237.578 kb on + strand, within AO353_01075at 237.578 kb on + strand, within AO353_01075at 237.578 kb on + strand, within AO353_01075at 237.579 kb on - strand, within AO353_01075at 237.579 kb on - strand, within AO353_01075at 237.579 kb on - strand, within AO353_01075at 237.579 kb on - strand, within AO353_01075at 237.609 kb on + strand, within AO353_01075at 237.610 kb on - strand, within AO353_01075at 237.610 kb on - strand, within AO353_01075at 237.675 kb on + strand, within AO353_01075at 237.675 kb on + strand, within AO353_01075at 237.754 kb on + strandat 237.754 kb on + strandat 237.755 kb on - strandat 237.755 kb on - strandat 237.755 kb on - strandat 237.789 kb on - strandat 237.817 kb on + strandat 237.818 kb on - strandat 237.824 kb on - strandat 237.824 kb on - strandat 237.891 kb on + strandat 237.930 kb on + strandat 237.930 kb on + strandat 237.931 kb on - strandat 237.931 kb on - strandat 237.947 kb on - strandat 237.969 kb on + strandat 237.969 kb on + strandat 237.969 kb on + strandat 237.969 kb on + strandat 237.969 kb on + strandat 237.969 kb on + strandat 237.970 kb on - strandat 237.970 kb on - strandat 237.970 kb on - strandat 237.970 kb on - strandat 238.053 kb on + strand, within AO353_01080at 238.053 kb on + strand, within AO353_01080at 238.053 kb on + strand, within AO353_01080at 238.054 kb on - strand, within AO353_01080at 238.054 kb on - strand, within AO353_01080at 238.054 kb on - strand, within AO353_01080at 238.054 kb on - strand, within AO353_01080at 238.054 kb on - strand, within AO353_01080at 238.054 kb on - strand, within AO353_01080at 238.058 kb on - strand, within AO353_01080at 238.058 kb on - strand, within AO353_01080at 238.058 kb on - strand, within AO353_01080at 238.058 kb on - strand, within AO353_01080at 238.058 kb on - strand, within AO353_01080at 238.192 kb on + strand, within AO353_01080at 238.205 kb on + strand, within AO353_01080at 238.205 kb on + strandat 238.205 kb on + strand, within AO353_01080at 238.205 kb on + strand, within AO353_01080at 238.206 kb on - strand, within AO353_01080at 238.206 kb on - strand, within AO353_01080at 238.209 kb on + strand, within AO353_01080at 238.209 kb on + strand, within AO353_01080at 238.209 kb on + strand, within AO353_01080at 238.209 kb on + strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.210 kb on - strand, within AO353_01080at 238.212 kb on + strand, within AO353_01080at 238.293 kb on + strand, within AO353_01080at 238.293 kb on + strand, within AO353_01080at 238.293 kb on + strand, within AO353_01080at 238.294 kb on - strand, within AO353_01080at 238.294 kb on - strand, within AO353_01080at 238.294 kb on - strand, within AO353_01080at 238.294 kb on - strand, within AO353_01080at 238.311 kb on + strand, within AO353_01080at 238.311 kb on + strand, within AO353_01080at 238.311 kb on + strand, within AO353_01080at 238.312 kb on - strand, within AO353_01080at 238.353 kb on + strand, within AO353_01080at 238.353 kb on + strand, within AO353_01080at 238.354 kb on - strand, within AO353_01080at 238.354 kb on - strand, within AO353_01080at 238.447 kb on + strand, within AO353_01080at 238.468 kb on + strand, within AO353_01080at 238.468 kb on + strand, within AO353_01080at 238.468 kb on + strand, within AO353_01080at 238.468 kb on + strand, within AO353_01080at 238.469 kb on - strand, within AO353_01080at 238.469 kb on - strand, within AO353_01080at 238.469 kb on - strand, within AO353_01080at 238.469 kb on - strand, within AO353_01080at 238.469 kb on - strand, within AO353_01080at 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.518 kb on + strandat 238.519 kb on - strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.571 kb on + strandat 238.571 kb on + strandat 238.571 kb on + strandat 238.571 kb on + strandat 238.572 kb on - strandat 238.572 kb on - strandat 238.650 kb on + strandat 238.650 kb on + strandat 238.650 kb on + strandat 238.651 kb on - strandat 238.651 kb on - strandat 238.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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236,447 + AO353_01070 0.45 +2.6
236,447 + AO353_01070 0.45 +2.2
236,686 + AO353_01070 0.59 +2.2
236,686 + AO353_01070 0.59 +2.7
236,687 - AO353_01070 0.59 +2.0
236,687 - AO353_01070 0.59 +2.9
236,687 - AO353_01070 0.59 +2.4
236,805 + AO353_01070 0.66 +3.6
236,805 + AO353_01070 0.66 +3.1
236,805 + +3.1
236,805 + AO353_01070 0.66 +2.9
236,806 - AO353_01070 0.66 +3.4
236,806 - AO353_01070 0.66 +2.7
236,806 - AO353_01070 0.66 +3.1
236,806 - AO353_01070 0.66 +2.9
236,806 - AO353_01070 0.66 +2.9
236,806 - AO353_01070 0.66 +2.4
236,806 - AO353_01070 0.66 +2.2
236,806 - AO353_01070 0.66 +2.8
236,806 - +2.4
236,845 + AO353_01070 0.68 +3.0
236,845 + AO353_01070 0.68 +2.3
236,845 + AO353_01070 0.68 +2.3
236,846 - +1.9
236,846 - AO353_01070 0.68 +2.6
236,846 - AO353_01070 0.68 +2.8
236,846 - AO353_01070 0.68 +2.8
236,860 + AO353_01070 0.69 +2.6
236,860 + AO353_01070 0.69 +2.3
236,860 + AO353_01070 0.69 +3.0
236,860 + AO353_01070 0.69 +2.5
236,860 + AO353_01070 0.69 +2.4
236,860 + AO353_01070 0.69 +3.0
236,860 + AO353_01070 0.69 +2.6
236,860 + AO353_01070 0.69 +2.8
236,860 + AO353_01070 0.69 +2.4
236,860 + AO353_01070 0.69 +3.2
236,860 + AO353_01070 0.69 +1.1
236,860 + +2.1
236,861 - AO353_01070 0.69 +3.5
236,861 - AO353_01070 0.69 +2.7
236,861 - AO353_01070 0.69 +2.1
236,861 - AO353_01070 0.69 +2.7
236,861 - AO353_01070 0.69 +2.6
236,938 + AO353_01070 0.73 +2.2
236,938 + AO353_01070 0.73 +3.2
236,938 + AO353_01070 0.73 +3.0
236,938 + AO353_01070 0.73 +2.7
236,938 + AO353_01070 0.73 +2.7
236,938 + AO353_01070 0.73 +3.1
236,938 + AO353_01070 0.73 +2.8
236,938 + AO353_01070 0.73 +2.3
236,938 + AO353_01070 0.73 +2.7
236,938 + AO353_01070 0.73 +2.1
236,938 + AO353_01070 0.73 +1.6
236,939 - AO353_01070 0.73 +2.8
236,939 - AO353_01070 0.73 +2.9
236,939 - AO353_01070 0.73 +3.0
236,939 - AO353_01070 0.73 +2.4
236,939 - AO353_01070 0.73 +2.2
236,939 - AO353_01070 0.73 +2.6
236,939 - AO353_01070 0.73 +2.8
236,939 - AO353_01070 0.73 +2.5
236,939 - AO353_01070 0.73 +3.1
236,939 - AO353_01070 0.73 +2.2
236,939 - AO353_01070 0.73 +2.3
236,939 - AO353_01070 0.73 +2.9
236,939 - AO353_01070 0.73 +4.1
236,947 + AO353_01070 0.74 +3.1
236,948 - AO353_01070 0.74 +2.4
236,948 - AO353_01070 0.74 +3.0
236,948 - AO353_01070 0.74 +2.9
236,962 + AO353_01070 0.75 +3.0
236,962 + AO353_01070 0.75 +2.3
236,962 + AO353_01070 0.75 +2.2
236,962 + AO353_01070 0.75 +2.7
236,962 + AO353_01070 0.75 +2.8
236,962 + AO353_01070 0.75 +3.3
236,962 + AO353_01070 0.75 +2.4
236,962 + AO353_01070 0.75 +2.7
236,962 + AO353_01070 0.75 +1.9
236,963 - AO353_01070 0.75 +2.4
236,963 - AO353_01070 0.75 +2.1
236,963 - AO353_01070 0.75 +2.5
237,043 + AO353_01070 0.80 +2.6
237,043 + AO353_01070 0.80 +2.6
237,043 + AO353_01070 0.80 +1.6
237,043 + AO353_01070 0.80 +2.8
237,043 + AO353_01070 0.80 +3.1
237,043 + AO353_01070 0.80 +2.2
237,043 + AO353_01070 0.80 +3.1
237,044 - AO353_01070 0.80 +1.7
237,131 + AO353_01070 0.85 +2.5
237,131 + AO353_01070 0.85 +3.7
237,132 - AO353_01070 0.85 +2.2
237,150 + AO353_01070 0.86 +2.7
237,151 - +2.2
237,194 - AO353_01070 0.88 +2.9
237,376 + +3.5
237,376 + +2.9
237,376 + +2.4
237,376 + +2.2
237,376 + +3.6
237,376 + +2.9
237,376 + +3.9
237,376 + +2.6
237,376 + +2.5
237,377 - +1.8
237,377 - +3.9
237,377 - +2.1
237,377 - +2.4
237,377 - +2.5
237,377 - +1.9
237,377 - +2.9
237,380 + +1.1
237,380 + +4.4
237,380 + +3.4
237,380 + +2.3
237,380 + +0.5
237,380 + +2.7
237,381 - +0.5
237,381 - +1.6
237,381 - +1.2
237,381 - +2.6
237,406 + +1.5
237,406 + -2.1
237,406 + -1.8
237,406 + +1.4
237,406 + +0.9
237,406 + +0.9
237,407 - -1.4
237,407 - +2.1
237,407 - +1.0
237,407 - +0.7
237,407 - +0.6
237,407 - -0.4
237,407 - +2.1
237,407 - +1.4
237,407 - -2.1
237,407 - -0.2
237,407 - +0.5
237,407 - +2.0
237,423 + +1.7
237,578 + AO353_01075 0.51 +1.0
237,578 + AO353_01075 0.51 +1.2
237,578 + AO353_01075 0.51 -1.1
237,578 + AO353_01075 0.51 +3.3
237,578 + AO353_01075 0.51 -0.2
237,578 + AO353_01075 0.51 -0.5
237,578 + AO353_01075 0.51 +0.9
237,578 + AO353_01075 0.51 +1.7
237,579 - AO353_01075 0.52 +1.2
237,579 - AO353_01075 0.52 +0.8
237,579 - AO353_01075 0.52 +1.6
237,579 - AO353_01075 0.52 +1.3
237,609 + AO353_01075 0.63 +0.6
237,610 - AO353_01075 0.63 -1.4
237,610 - AO353_01075 0.63 +1.6
237,675 + AO353_01075 0.88 +0.6
237,675 + AO353_01075 0.88 +0.1
237,754 + +1.1
237,754 + -1.1
237,755 - +1.8
237,755 - -1.6
237,755 - +3.4
237,789 - -1.4
237,817 + -1.4
237,818 - +1.1
237,824 - -0.1
237,824 - +1.6
237,891 + -2.1
237,930 + -0.4
237,930 + +0.6
237,931 - -0.6
237,931 - -1.5
237,947 - +0.4
237,969 + -1.4
237,969 + -0.6
237,969 + +0.5
237,969 + +0.6
237,969 + -0.4
237,969 + -1.8
237,970 - -2.2
237,970 - -2.6
237,970 - -1.1
237,970 - -0.4
238,053 + AO353_01080 0.20 -0.6
238,053 + AO353_01080 0.20 +0.9
238,053 + AO353_01080 0.20 -1.1
238,054 - AO353_01080 0.20 +1.1
238,054 - AO353_01080 0.20 -0.4
238,054 - AO353_01080 0.20 -2.0
238,054 - AO353_01080 0.20 -0.1
238,054 - AO353_01080 0.20 +0.2
238,054 - AO353_01080 0.20 -0.5
238,058 - AO353_01080 0.20 -0.1
238,058 - AO353_01080 0.20 -0.1
238,058 - AO353_01080 0.20 -1.1
238,058 - AO353_01080 0.20 -0.9
238,058 - AO353_01080 0.20 -1.2
238,192 + AO353_01080 0.42 -2.1
238,205 + AO353_01080 0.44 +2.2
238,205 + +0.4
238,205 + AO353_01080 0.44 +0.9
238,205 + AO353_01080 0.44 -0.4
238,206 - AO353_01080 0.44 -0.8
238,206 - AO353_01080 0.44 -1.5
238,209 + AO353_01080 0.44 -1.4
238,209 + AO353_01080 0.44 -1.0
238,209 + AO353_01080 0.44 -0.0
238,209 + AO353_01080 0.44 +1.1
238,210 - AO353_01080 0.45 -0.6
238,210 - AO353_01080 0.45 +0.4
238,210 - AO353_01080 0.45 -0.1
238,210 - AO353_01080 0.45 -0.9
238,210 - AO353_01080 0.45 +0.9
238,210 - AO353_01080 0.45 +0.9
238,210 - AO353_01080 0.45 +0.6
238,210 - AO353_01080 0.45 -1.2
238,212 + AO353_01080 0.45 -0.4
238,293 + AO353_01080 0.58 -0.5
238,293 + AO353_01080 0.58 -2.7
238,293 + AO353_01080 0.58 -0.6
238,294 - AO353_01080 0.58 -1.1
238,294 - AO353_01080 0.58 -1.1
238,294 - AO353_01080 0.58 -0.5
238,294 - AO353_01080 0.58 +0.7
238,311 + AO353_01080 0.61 -0.5
238,311 + AO353_01080 0.61 -0.4
238,311 + AO353_01080 0.61 -2.0
238,312 - AO353_01080 0.61 -0.2
238,353 + AO353_01080 0.67 +0.4
238,353 + AO353_01080 0.67 -1.5
238,354 - AO353_01080 0.67 +0.9
238,354 - AO353_01080 0.67 +0.4
238,447 + AO353_01080 0.82 -0.9
238,468 + AO353_01080 0.86 -1.8
238,468 + AO353_01080 0.86 +0.9
238,468 + AO353_01080 0.86 +0.9
238,468 + AO353_01080 0.86 -1.2
238,469 - AO353_01080 0.86 +1.4
238,469 - AO353_01080 0.86 -0.8
238,469 - AO353_01080 0.86 +0.8
238,469 - AO353_01080 0.86 -0.1
238,469 - AO353_01080 0.86 -1.8
238,518 + -1.5
238,518 + -0.4
238,518 + -1.9
238,518 + +2.2
238,518 + -0.9
238,518 + -0.4
238,518 + -1.5
238,518 + -1.6
238,518 + +1.3
238,518 + +0.4
238,518 + +0.8
238,519 - -1.4
238,558 + +0.1
238,558 + -0.4
238,558 + +1.2
238,558 + +0.2
238,558 + -1.0
238,558 + -1.8
238,558 + -0.2
238,559 - +0.6
238,559 - -1.6
238,559 - -1.1
238,559 - -1.6
238,559 - +0.3
238,559 - +1.0
238,559 - +0.7
238,559 - -1.3
238,559 - -2.0
238,559 - -2.0
238,559 - +0.4
238,559 - -1.2
238,559 - -0.8
238,559 - -2.5
238,559 - -0.4
238,571 + +0.4
238,571 + -1.2
238,571 + +0.9
238,571 + -1.3
238,572 - +1.4
238,572 - -0.1
238,650 + -0.4
238,650 + +0.9
238,650 + -0.4
238,651 - +0.4
238,651 - -0.5
238,651 - +2.3

Or see this region's nucleotide sequence