Experiment: L-Citrulline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01035 and AO353_01040 are separated by 265 nucleotides AO353_01040 and AO353_01045 are separated by 35 nucleotides AO353_01045 and AO353_01050 are separated by 251 nucleotides
AO353_01035: AO353_01035 - hypothetical protein, at 227,927 to 228,136
_01035
AO353_01040: AO353_01040 - polyhydroxyalkanoate synthesis regulator, at 228,402 to 228,935
_01040
AO353_01045: AO353_01045 - phasin, at 228,971 to 229,534
_01045
AO353_01050: AO353_01050 - poly(3-hydroxyalkanoate) synthetase, at 229,786 to 232,104
_01050
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 228.026 kb on + strand, within AO353_01035 at 228.027 kb on - strand, within AO353_01035 at 228.027 kb on - strand, within AO353_01035 at 228.027 kb on - strand, within AO353_01035 at 228.083 kb on + strand, within AO353_01035 at 228.083 kb on + strand, within AO353_01035 at 228.083 kb on + strand, within AO353_01035 at 228.122 kb on - strand at 228.297 kb on + strand at 228.297 kb on + strand at 228.298 kb on - strand at 228.298 kb on - strand at 228.298 kb on - strand at 228.357 kb on + strand at 228.358 kb on - strand at 228.358 kb on - strand at 228.358 kb on - strand at 228.362 kb on + strand at 228.363 kb on - strand at 228.363 kb on - strand at 228.363 kb on - strand at 228.373 kb on + strand at 228.373 kb on + strand at 228.374 kb on - strand at 228.374 kb on - strand at 228.393 kb on + strand at 228.393 kb on + strand at 228.410 kb on + strand at 228.410 kb on + strand at 228.410 kb on + strand at 228.410 kb on + strand at 228.410 kb on + strand at 228.410 kb on + strand at 228.410 kb on + strand at 228.411 kb on - strand at 228.411 kb on - strand at 228.411 kb on - strand at 228.411 kb on - strand at 228.411 kb on - strand at 228.411 kb on - strand at 228.411 kb on - strand at 228.460 kb on + strand, within AO353_01040 at 228.460 kb on + strand, within AO353_01040 at 228.460 kb on + strand, within AO353_01040 at 228.460 kb on + strand, within AO353_01040 at 228.460 kb on + strand at 228.460 kb on + strand, within AO353_01040 at 228.460 kb on + strand, within AO353_01040 at 228.460 kb on + strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.461 kb on - strand, within AO353_01040 at 228.462 kb on + strand, within AO353_01040 at 228.462 kb on + strand, within AO353_01040 at 228.462 kb on + strand, within AO353_01040 at 228.462 kb on + strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.463 kb on - strand, within AO353_01040 at 228.502 kb on + strand, within AO353_01040 at 228.502 kb on + strand, within AO353_01040 at 228.503 kb on - strand, within AO353_01040 at 228.503 kb on - strand, within AO353_01040 at 228.503 kb on - strand, within AO353_01040 at 228.503 kb on - strand, within AO353_01040 at 228.522 kb on - strand, within AO353_01040 at 228.522 kb on - strand, within AO353_01040 at 228.575 kb on + strand at 228.575 kb on + strand, within AO353_01040 at 228.575 kb on + strand, within AO353_01040 at 228.576 kb on - strand, within AO353_01040 at 228.660 kb on + strand, within AO353_01040 at 228.660 kb on + strand, within AO353_01040 at 228.660 kb on + strand, within AO353_01040 at 228.660 kb on + strand, within AO353_01040 at 228.661 kb on - strand, within AO353_01040 at 228.661 kb on - strand, within AO353_01040 at 228.690 kb on + strand, within AO353_01040 at 228.690 kb on + strand, within AO353_01040 at 228.690 kb on + strand, within AO353_01040 at 228.690 kb on + strand, within AO353_01040 at 228.690 kb on + strand, within AO353_01040 at 228.690 kb on + strand, within AO353_01040 at 228.691 kb on - strand, within AO353_01040 at 228.691 kb on - strand, within AO353_01040 at 228.691 kb on - strand, within AO353_01040 at 228.691 kb on - strand, within AO353_01040 at 228.691 kb on - strand, within AO353_01040 at 228.698 kb on + strand, within AO353_01040 at 228.699 kb on - strand, within AO353_01040 at 228.813 kb on + strand, within AO353_01040 at 228.813 kb on + strand, within AO353_01040 at 228.813 kb on + strand, within AO353_01040 at 228.814 kb on - strand, within AO353_01040 at 228.814 kb on - strand, within AO353_01040 at 228.837 kb on + strand, within AO353_01040 at 228.837 kb on + strand, within AO353_01040 at 228.837 kb on + strand, within AO353_01040 at 228.838 kb on - strand, within AO353_01040 at 228.933 kb on + strand at 228.934 kb on - strand at 228.962 kb on + strand at 228.962 kb on + strand at 228.963 kb on - strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.972 kb on + strand at 228.973 kb on - strand at 228.973 kb on - strand at 228.973 kb on - strand at 228.973 kb on - strand at 228.973 kb on - strand at 228.973 kb on - strand at 228.973 kb on - strand at 228.973 kb on - strand at 228.973 kb on - strand at 229.070 kb on + strand, within AO353_01045 at 229.304 kb on + strand, within AO353_01045 at 229.304 kb on + strand at 229.305 kb on - strand, within AO353_01045 at 229.305 kb on - strand, within AO353_01045 at 229.305 kb on - strand, within AO353_01045 at 229.305 kb on - strand, within AO353_01045 at 229.305 kb on - strand, within AO353_01045 at 229.305 kb on - strand at 229.305 kb on - strand at 229.484 kb on + strand at 229.484 kb on + strand at 229.484 kb on + strand at 229.484 kb on + strand at 229.484 kb on + strand at 229.484 kb on + strand at 229.484 kb on + strand at 229.485 kb on - strand at 229.485 kb on - strand at 229.485 kb on - strand at 229.485 kb on - strand at 229.485 kb on - strand at 229.485 kb on - strand at 229.485 kb on - strand at 229.566 kb on + strand at 229.566 kb on + strand at 229.607 kb on + strand at 229.608 kb on - strand at 229.613 kb on + strand at 229.613 kb on + strand at 229.614 kb on - strand at 229.614 kb on - strand at 229.614 kb on - strand at 229.616 kb on + strand at 229.687 kb on + strand at 229.696 kb on + strand at 229.696 kb on + strand at 229.696 kb on + strand at 229.697 kb on - strand at 229.697 kb on - strand at 229.697 kb on - strand at 229.697 kb on - strand at 229.697 kb on - strand at 229.697 kb on - strand at 229.768 kb on + strand at 229.769 kb on - strand at 229.769 kb on - strand at 229.769 kb on - strand at 229.800 kb on + strand at 229.800 kb on + strand at 229.800 kb on + strand at 229.801 kb on - strand at 229.801 kb on - strand at 229.801 kb on - strand at 229.803 kb on + strand at 229.803 kb on + strand at 229.803 kb on + strand at 229.803 kb on + strand at 229.804 kb on - strand at 229.804 kb on - strand at 229.816 kb on + strand at 229.816 kb on + strand at 229.816 kb on + strand at 229.817 kb on - strand at 229.817 kb on - strand at 229.818 kb on + strand at 229.818 kb on + strand at 229.879 kb on - strand at 229.959 kb on + strand at 229.959 kb on + strand at 229.959 kb on + strand at 229.959 kb on + strand at 229.959 kb on + strand at 229.959 kb on + strand at 229.959 kb on + strand at 229.960 kb on - strand at 229.960 kb on - strand at 229.960 kb on - strand at 229.960 kb on - strand at 229.960 kb on - strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.981 kb on + strand at 229.982 kb on - strand at 229.982 kb on - strand at 229.982 kb on - strand at 229.982 kb on - strand at 229.982 kb on - strand at 229.982 kb on - strand at 229.982 kb on - strand at 229.982 kb on - strand at 229.982 kb on - strand at 230.047 kb on - strand, within AO353_01050 at 230.047 kb on - strand, within AO353_01050 at 230.047 kb on - strand, within AO353_01050 at 230.140 kb on + strand, within AO353_01050 at 230.140 kb on + strand, within AO353_01050 at 230.140 kb on + strand, within AO353_01050 at 230.140 kb on + strand, within AO353_01050 at 230.141 kb on - strand, within AO353_01050 at 230.141 kb on - strand, within AO353_01050 at 230.141 kb on - strand, within AO353_01050 at 230.141 kb on - strand, within AO353_01050 at 230.141 kb on - strand, within AO353_01050 at 230.265 kb on - strand, within AO353_01050 at 230.267 kb on + strand, within AO353_01050 at 230.268 kb on - strand, within AO353_01050 at 230.268 kb on - strand, within AO353_01050 at 230.299 kb on + strand, within AO353_01050 at 230.299 kb on + strand, within AO353_01050 at 230.299 kb on + strand, within AO353_01050 at 230.299 kb on + strand, within AO353_01050 at 230.299 kb on + strand, within AO353_01050 at 230.299 kb on + strand, within AO353_01050 at 230.300 kb on - strand, within AO353_01050 at 230.300 kb on - strand, within AO353_01050 at 230.300 kb on - strand, within AO353_01050 at 230.300 kb on - strand, within AO353_01050 at 230.300 kb on - strand, within AO353_01050 at 230.421 kb on + strand, within AO353_01050 at 230.422 kb on - strand, within AO353_01050 at 230.497 kb on - strand, within AO353_01050 at 230.518 kb on + strand, within AO353_01050
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline remove 228,026 + AO353_01035 0.47 -0.9 228,027 - AO353_01035 0.48 +0.0 228,027 - AO353_01035 0.48 +2.4 228,027 - AO353_01035 0.48 +1.5 228,083 + AO353_01035 0.74 +0.4 228,083 + AO353_01035 0.74 +0.7 228,083 + AO353_01035 0.74 +0.3 228,122 - -1.5 228,297 + +0.8 228,297 + -0.4 228,298 - +1.6 228,298 - -0.8 228,298 - -1.6 228,357 + +0.4 228,358 - -0.5 228,358 - +0.1 228,358 - -2.1 228,362 + -0.1 228,363 - -0.9 228,363 - -0.6 228,363 - +0.9 228,373 + +0.9 228,373 + +1.4 228,374 - +1.9 228,374 - +1.0 228,393 + +0.3 228,393 + -2.0 228,410 + -0.1 228,410 + -0.4 228,410 + -1.4 228,410 + -2.1 228,410 + +1.3 228,410 + -1.3 228,410 + +1.4 228,411 - +2.2 228,411 - +1.8 228,411 - -0.2 228,411 - +0.3 228,411 - -1.1 228,411 - +0.2 228,411 - +1.7 228,460 + AO353_01040 0.11 -0.1 228,460 + AO353_01040 0.11 -1.2 228,460 + AO353_01040 0.11 +0.9 228,460 + AO353_01040 0.11 +0.1 228,460 + +1.9 228,460 + AO353_01040 0.11 +1.4 228,460 + AO353_01040 0.11 -0.2 228,460 + AO353_01040 0.11 +0.8 228,461 - AO353_01040 0.11 -0.6 228,461 - AO353_01040 0.11 -1.8 228,461 - AO353_01040 0.11 +0.4 228,461 - AO353_01040 0.11 +0.8 228,461 - AO353_01040 0.11 +0.2 228,461 - AO353_01040 0.11 -0.6 228,461 - AO353_01040 0.11 +0.0 228,461 - AO353_01040 0.11 -1.4 228,461 - AO353_01040 0.11 -0.8 228,462 + AO353_01040 0.11 -2.1 228,462 + AO353_01040 0.11 +0.2 228,462 + AO353_01040 0.11 +0.2 228,462 + AO353_01040 0.11 -1.4 228,463 - AO353_01040 0.11 +0.7 228,463 - AO353_01040 0.11 +1.9 228,463 - AO353_01040 0.11 -0.1 228,463 - AO353_01040 0.11 -2.5 228,463 - AO353_01040 0.11 -1.5 228,463 - AO353_01040 0.11 -0.1 228,463 - AO353_01040 0.11 -2.5 228,463 - AO353_01040 0.11 +1.5 228,463 - AO353_01040 0.11 -0.4 228,502 + AO353_01040 0.19 +0.4 228,502 + AO353_01040 0.19 +2.5 228,503 - AO353_01040 0.19 +1.5 228,503 - AO353_01040 0.19 -2.2 228,503 - AO353_01040 0.19 +0.6 228,503 - AO353_01040 0.19 +0.5 228,522 - AO353_01040 0.22 +0.4 228,522 - AO353_01040 0.22 -1.8 228,575 + +0.9 228,575 + AO353_01040 0.32 +0.1 228,575 + AO353_01040 0.32 -1.2 228,576 - AO353_01040 0.33 +0.8 228,660 + AO353_01040 0.48 +1.3 228,660 + AO353_01040 0.48 -1.2 228,660 + AO353_01040 0.48 -1.6 228,660 + AO353_01040 0.48 -0.9 228,661 - AO353_01040 0.49 -1.3 228,661 - AO353_01040 0.49 +0.4 228,690 + AO353_01040 0.54 +2.8 228,690 + AO353_01040 0.54 -0.2 228,690 + AO353_01040 0.54 +0.1 228,690 + AO353_01040 0.54 -0.4 228,690 + AO353_01040 0.54 +0.8 228,690 + AO353_01040 0.54 +0.4 228,691 - AO353_01040 0.54 +1.9 228,691 - AO353_01040 0.54 +1.3 228,691 - AO353_01040 0.54 +0.9 228,691 - AO353_01040 0.54 +0.6 228,691 - AO353_01040 0.54 +2.3 228,698 + AO353_01040 0.55 -1.3 228,699 - AO353_01040 0.56 +0.9 228,813 + AO353_01040 0.77 +0.2 228,813 + AO353_01040 0.77 -0.1 228,813 + AO353_01040 0.77 -2.4 228,814 - AO353_01040 0.77 +1.2 228,814 - AO353_01040 0.77 -1.6 228,837 + AO353_01040 0.81 -1.9 228,837 + AO353_01040 0.81 -2.0 228,837 + AO353_01040 0.81 +0.4 228,838 - AO353_01040 0.82 -1.6 228,933 + +1.7 228,934 - +1.4 228,962 + +0.4 228,962 + +0.7 228,963 - +1.3 228,972 + +0.7 228,972 + +0.9 228,972 + -0.9 228,972 + +0.2 228,972 + +1.9 228,972 + -0.1 228,972 + +1.6 228,972 + +0.8 228,972 + -2.1 228,972 + -0.1 228,972 + +0.8 228,973 - +1.1 228,973 - +2.2 228,973 - +1.8 228,973 - +2.9 228,973 - +1.3 228,973 - +2.5 228,973 - -0.1 228,973 - +1.1 228,973 - +0.8 229,070 + AO353_01045 0.18 +1.2 229,304 + AO353_01045 0.59 +2.2 229,304 + +4.4 229,305 - AO353_01045 0.59 +1.6 229,305 - AO353_01045 0.59 +1.2 229,305 - AO353_01045 0.59 +3.5 229,305 - AO353_01045 0.59 +1.1 229,305 - AO353_01045 0.59 +2.4 229,305 - -0.1 229,305 - +2.2 229,484 + +2.5 229,484 + +3.3 229,484 + +3.7 229,484 + +1.6 229,484 + +1.9 229,484 + +1.9 229,484 + +0.9 229,485 - +1.4 229,485 - +2.0 229,485 - +3.1 229,485 - +2.3 229,485 - -0.3 229,485 - +0.0 229,485 - -0.6 229,566 + -0.6 229,566 + +3.2 229,607 + +2.7 229,608 - +1.8 229,613 + +2.0 229,613 + +1.0 229,614 - +2.1 229,614 - +1.2 229,614 - +0.9 229,616 + +3.0 229,687 + +3.4 229,696 + -0.9 229,696 + +0.9 229,696 + +0.1 229,697 - -0.0 229,697 - -1.1 229,697 - -1.6 229,697 - -1.5 229,697 - +1.5 229,697 - -0.9 229,768 + -0.8 229,769 - +1.2 229,769 - -2.0 229,769 - +0.6 229,800 + -1.1 229,800 + -1.2 229,800 + +0.9 229,801 - +0.8 229,801 - +0.8 229,801 - +0.9 229,803 + +3.3 229,803 + +0.9 229,803 + +1.2 229,803 + +0.0 229,804 - -1.1 229,804 - +1.1 229,816 + -0.6 229,816 + +0.8 229,816 + -0.5 229,817 - +1.4 229,817 - +2.3 229,818 + +0.7 229,818 + -0.1 229,879 - +0.4 229,959 + -1.2 229,959 + -1.8 229,959 + -1.1 229,959 + -1.4 229,959 + -0.4 229,959 + -2.4 229,959 + -0.1 229,960 - +0.8 229,960 - +2.1 229,960 - -2.2 229,960 - +1.5 229,960 - +1.9 229,981 + +1.9 229,981 + +2.6 229,981 + +1.2 229,981 + -0.9 229,981 + -1.8 229,981 + +0.6 229,981 + +0.1 229,981 + +0.0 229,981 + -0.9 229,982 - +0.7 229,982 - -1.0 229,982 - -0.4 229,982 - +0.4 229,982 - -0.1 229,982 - +0.1 229,982 - -0.8 229,982 - -1.2 229,982 - +0.6 230,047 - AO353_01050 0.11 -1.0 230,047 - AO353_01050 0.11 +0.8 230,047 - AO353_01050 0.11 -1.4 230,140 + AO353_01050 0.15 -0.5 230,140 + AO353_01050 0.15 +0.2 230,140 + AO353_01050 0.15 -0.9 230,140 + AO353_01050 0.15 +0.9 230,141 - AO353_01050 0.15 -0.6 230,141 - AO353_01050 0.15 -0.1 230,141 - AO353_01050 0.15 +1.2 230,141 - AO353_01050 0.15 +0.5 230,141 - AO353_01050 0.15 -0.6 230,265 - AO353_01050 0.21 +2.8 230,267 + AO353_01050 0.21 -0.5 230,268 - AO353_01050 0.21 +0.3 230,268 - AO353_01050 0.21 -2.1 230,299 + AO353_01050 0.22 +1.8 230,299 + AO353_01050 0.22 -2.1 230,299 + AO353_01050 0.22 -1.5 230,299 + AO353_01050 0.22 +0.8 230,299 + AO353_01050 0.22 +0.3 230,299 + AO353_01050 0.22 +1.2 230,300 - AO353_01050 0.22 -2.8 230,300 - AO353_01050 0.22 -1.2 230,300 - AO353_01050 0.22 -1.1 230,300 - AO353_01050 0.22 +0.3 230,300 - AO353_01050 0.22 -0.4 230,421 + AO353_01050 0.27 -0.1 230,422 - AO353_01050 0.27 -0.9 230,497 - AO353_01050 0.31 -0.9 230,518 + AO353_01050 0.32 -0.5
Or see this region's nucleotide sequence