Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02175 and SMc02174 are separated by 235 nucleotides SMc02174 and SMc02173 are separated by 66 nucleotides SMc02173 and SMc02172 are separated by 4 nucleotides
SMc02175: SMc02175 - transcriptional regulator, at 520,434 to 521,138
SMc02175
SMc02174: SMc02174 - hypothetical protein, at 521,374 to 521,811
SMc02174
SMc02173: SMc02173 - hypothetical protein, at 521,878 to 522,306
SMc02173
SMc02172: SMc02172 - transcriptional regulator, at 522,311 to 523,540
SMc02172
Position (kb) 521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 520.383 kb on - strand at 520.383 kb on - strand at 520.690 kb on + strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.984 kb on + strand, within SMc02175 at 520.984 kb on + strand, within SMc02175 at 520.985 kb on - strand, within SMc02175 at 520.985 kb on - strand, within SMc02175 at 521.056 kb on - strand, within SMc02175 at 521.056 kb on - strand, within SMc02175 at 521.092 kb on - strand at 521.092 kb on - strand at 521.278 kb on - strand at 521.311 kb on + strand at 521.333 kb on + strand at 521.333 kb on + strand at 521.334 kb on - strand at 521.334 kb on - strand at 521.334 kb on - strand at 521.429 kb on + strand, within SMc02174 at 521.430 kb on - strand, within SMc02174 at 521.475 kb on + strand, within SMc02174 at 521.590 kb on + strand at 521.591 kb on - strand, within SMc02174 at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.886 kb on - strand at 521.918 kb on + strand at 521.973 kb on - strand, within SMc02173 at 522.137 kb on - strand, within SMc02173 at 522.209 kb on + strand, within SMc02173 at 522.292 kb on + strand at 522.293 kb on - strand at 522.313 kb on - strand at 522.597 kb on - strand, within SMc02172
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 520,383 - +0.6 520,383 - -0.1 520,690 + SMc02175 0.36 -1.0 520,817 - SMc02175 0.54 -0.1 520,817 - SMc02175 0.54 +0.8 520,817 - SMc02175 0.54 -1.7 520,984 + SMc02175 0.78 +0.9 520,984 + SMc02175 0.78 +0.6 520,985 - SMc02175 0.78 +0.2 520,985 - SMc02175 0.78 -0.2 521,056 - SMc02175 0.88 +0.3 521,056 - SMc02175 0.88 +0.2 521,092 - -0.8 521,092 - +0.1 521,278 - -0.3 521,311 + +0.7 521,333 + -2.8 521,333 + -0.2 521,334 - -0.6 521,334 - -0.7 521,334 - -0.0 521,429 + SMc02174 0.13 +1.0 521,430 - SMc02174 0.13 -0.4 521,475 + SMc02174 0.23 +0.1 521,590 + +0.2 521,591 - SMc02174 0.50 +0.1 521,885 + +0.3 521,885 + +0.0 521,885 + -0.0 521,885 + +0.1 521,885 + -0.9 521,886 - -0.1 521,918 + -2.1 521,973 - SMc02173 0.22 -0.2 522,137 - SMc02173 0.60 +2.3 522,209 + SMc02173 0.77 +1.3 522,292 + +0.0 522,293 - -0.5 522,313 - -0.0 522,597 - SMc02172 0.23 -0.9
Or see this region's nucleotide sequence