Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00961 and SMc00960 are separated by 103 nucleotides SMc00960 and SMc00068 are separated by 141 nucleotides
SMc00961: SMc00961 - hypothetical protein, at 978,428 to 979,627
SMc00961
SMc00960: SMc00960 - hypothetical protein, at 979,731 to 981,146
SMc00960
SMc00068: SMc00068 - hypothetical protein, at 981,288 to 982,517
SMc00068
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 978.819 kb on - strand, within SMc00961 at 979.395 kb on - strand, within SMc00961 at 979.395 kb on - strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.400 kb on + strand, within SMc00961 at 979.401 kb on - strand, within SMc00961 at 979.401 kb on - strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.403 kb on + strand, within SMc00961 at 979.404 kb on - strand, within SMc00961 at 979.404 kb on - strand, within SMc00961 at 979.404 kb on - strand, within SMc00961 at 979.677 kb on + strand at 979.944 kb on + strand, within SMc00960 at 979.944 kb on + strand, within SMc00960 at 979.944 kb on + strand, within SMc00960 at 980.267 kb on + strand, within SMc00960 at 980.268 kb on - strand, within SMc00960 at 980.350 kb on + strand, within SMc00960 at 980.656 kb on - strand, within SMc00960 at 980.692 kb on - strand, within SMc00960 at 980.692 kb on - strand, within SMc00960 at 980.693 kb on + strand, within SMc00960 at 980.693 kb on + strand, within SMc00960 at 980.694 kb on - strand, within SMc00960 at 980.694 kb on - strand, within SMc00960 at 980.720 kb on - strand, within SMc00960 at 980.720 kb on - strand, within SMc00960 at 980.760 kb on + strand, within SMc00960 at 980.760 kb on + strand, within SMc00960 at 980.796 kb on + strand, within SMc00960 at 980.796 kb on + strand, within SMc00960 at 980.796 kb on + strand, within SMc00960 at 980.797 kb on - strand, within SMc00960 at 980.797 kb on - strand, within SMc00960 at 980.797 kb on - strand at 980.797 kb on - strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.856 kb on + strand, within SMc00960 at 980.857 kb on - strand, within SMc00960 at 980.857 kb on - strand, within SMc00960 at 980.857 kb on - strand, within SMc00960 at 980.857 kb on - strand, within SMc00960 at 980.857 kb on - strand, within SMc00960 at 980.857 kb on - strand, within SMc00960 at 980.857 kb on - strand, within SMc00960 at 981.319 kb on + strand at 981.320 kb on - strand at 981.387 kb on + strand at 981.388 kb on - strand at 981.394 kb on + strand at 981.395 kb on - strand at 981.548 kb on + strand, within SMc00068 at 981.643 kb on + strand, within SMc00068 at 981.644 kb on - strand, within SMc00068 at 981.884 kb on + strand, within SMc00068 at 981.885 kb on - strand, within SMc00068 at 981.901 kb on + strand, within SMc00068 at 981.976 kb on + strand, within SMc00068 at 981.988 kb on + strand, within SMc00068 at 981.988 kb on + strand, within SMc00068 at 981.989 kb on - strand, within SMc00068
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 978,819 - SMc00961 0.33 -0.6 979,395 - SMc00961 0.81 +1.8 979,395 - SMc00961 0.81 +1.0 979,400 + SMc00961 0.81 +0.2 979,400 + SMc00961 0.81 +1.0 979,400 + SMc00961 0.81 +0.7 979,400 + SMc00961 0.81 -0.4 979,400 + SMc00961 0.81 +0.3 979,400 + SMc00961 0.81 +0.7 979,401 - SMc00961 0.81 -0.3 979,401 - SMc00961 0.81 +0.6 979,403 + SMc00961 0.81 +0.1 979,403 + SMc00961 0.81 +0.2 979,403 + SMc00961 0.81 +0.7 979,403 + SMc00961 0.81 +0.4 979,403 + SMc00961 0.81 +0.5 979,404 - SMc00961 0.81 +0.1 979,404 - SMc00961 0.81 -0.4 979,404 - SMc00961 0.81 -0.3 979,677 + -0.3 979,944 + SMc00960 0.15 +0.3 979,944 + SMc00960 0.15 -0.7 979,944 + SMc00960 0.15 +0.2 980,267 + SMc00960 0.38 -1.3 980,268 - SMc00960 0.38 +1.0 980,350 + SMc00960 0.44 -0.7 980,656 - SMc00960 0.65 +0.2 980,692 - SMc00960 0.68 -0.0 980,692 - SMc00960 0.68 -1.7 980,693 + SMc00960 0.68 -0.6 980,693 + SMc00960 0.68 -0.7 980,694 - SMc00960 0.68 -0.2 980,694 - SMc00960 0.68 -0.9 980,720 - SMc00960 0.70 +1.6 980,720 - SMc00960 0.70 -0.8 980,760 + SMc00960 0.73 -0.2 980,760 + SMc00960 0.73 -0.9 980,796 + SMc00960 0.75 -1.0 980,796 + SMc00960 0.75 -0.7 980,796 + SMc00960 0.75 -0.3 980,797 - SMc00960 0.75 -2.1 980,797 - SMc00960 0.75 +0.7 980,797 - -1.4 980,797 - SMc00960 0.75 -1.2 980,856 + SMc00960 0.79 -0.2 980,856 + SMc00960 0.79 -0.2 980,856 + SMc00960 0.79 -1.3 980,856 + SMc00960 0.79 +0.3 980,856 + SMc00960 0.79 -0.8 980,856 + SMc00960 0.79 +0.1 980,856 + SMc00960 0.79 -0.1 980,856 + SMc00960 0.79 -1.3 980,857 - SMc00960 0.80 -0.0 980,857 - SMc00960 0.80 +0.4 980,857 - SMc00960 0.80 +1.1 980,857 - SMc00960 0.80 -0.5 980,857 - SMc00960 0.80 +1.4 980,857 - SMc00960 0.80 -1.4 980,857 - SMc00960 0.80 -0.2 981,319 + +0.4 981,320 - -1.1 981,387 + -0.2 981,388 - +0.0 981,394 + +1.3 981,395 - -0.0 981,548 + SMc00068 0.21 +1.8 981,643 + SMc00068 0.29 -0.4 981,644 - SMc00068 0.29 +0.8 981,884 + SMc00068 0.48 -0.3 981,885 - SMc00068 0.49 +0.4 981,901 + SMc00068 0.50 +0.2 981,976 + SMc00068 0.56 -0.3 981,988 + SMc00068 0.57 +0.7 981,988 + SMc00068 0.57 +0.4 981,989 - SMc00068 0.57 +0.1
Or see this region's nucleotide sequence