Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00605 and SMc00606 overlap by 4 nucleotides SMc00606 and SMc00607 are separated by 53 nucleotides SMc00607 and SMc00608 are separated by 51 nucleotides
SMc00605: SMc00605 - hypothetical protein, at 1,276,341 to 1,276,949
SMc00605
SMc00606: SMc00606 - ribonuclease, at 1,276,946 to 1,277,704
SMc00606
SMc00607: SMc00607 - signal peptide protein, at 1,277,758 to 1,278,201
SMc00607
SMc00608: SMc00608 - hypothetical protein, at 1,278,253 to 1,279,122
SMc00608
Position (kb)
1277
1278
1279 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1276.918 kb on + strand at 1276.918 kb on + strand at 1276.919 kb on + strand at 1276.923 kb on + strand at 1276.923 kb on + strand at 1276.924 kb on - strand at 1277.074 kb on + strand, within SMc00606 at 1277.224 kb on - strand, within SMc00606 at 1277.288 kb on - strand, within SMc00606 at 1277.288 kb on - strand, within SMc00606 at 1277.308 kb on - strand, within SMc00606 at 1277.358 kb on + strand, within SMc00606 at 1277.358 kb on + strand, within SMc00606 at 1277.359 kb on - strand, within SMc00606 at 1277.359 kb on - strand, within SMc00606 at 1277.499 kb on + strand, within SMc00606 at 1277.499 kb on + strand, within SMc00606 at 1277.499 kb on + strand, within SMc00606 at 1277.500 kb on - strand, within SMc00606 at 1277.500 kb on - strand, within SMc00606 at 1277.792 kb on + strand at 1277.792 kb on + strand at 1277.792 kb on + strand at 1277.793 kb on - strand at 1277.793 kb on - strand at 1277.793 kb on - strand at 1277.793 kb on - strand at 1277.793 kb on - strand at 1277.826 kb on + strand, within SMc00607 at 1277.827 kb on - strand, within SMc00607 at 1277.915 kb on + strand, within SMc00607 at 1277.915 kb on + strand, within SMc00607 at 1277.916 kb on - strand, within SMc00607 at 1277.921 kb on + strand, within SMc00607 at 1277.922 kb on - strand, within SMc00607 at 1277.945 kb on + strand, within SMc00607 at 1278.014 kb on + strand, within SMc00607 at 1278.014 kb on + strand, within SMc00607 at 1278.029 kb on + strand, within SMc00607 at 1278.089 kb on + strand, within SMc00607 at 1278.089 kb on + strand, within SMc00607 at 1278.206 kb on - strand at 1278.206 kb on - strand at 1278.531 kb on - strand, within SMc00608 at 1278.542 kb on + strand, within SMc00608 at 1278.542 kb on + strand, within SMc00608 at 1278.542 kb on + strand, within SMc00608 at 1278.543 kb on - strand, within SMc00608 at 1278.543 kb on - strand, within SMc00608 at 1278.599 kb on + strand, within SMc00608 at 1278.599 kb on + strand, within SMc00608 at 1278.599 kb on + strand, within SMc00608 at 1278.600 kb on - strand, within SMc00608 at 1278.875 kb on + strand, within SMc00608 at 1278.876 kb on - strand, within SMc00608 at 1278.876 kb on - strand, within SMc00608 at 1278.876 kb on - strand, within SMc00608 at 1278.876 kb on - strand, within SMc00608 at 1278.876 kb on - strand, within SMc00608 at 1278.983 kb on + strand, within SMc00608 at 1278.983 kb on + strand, within SMc00608 at 1279.103 kb on + strand at 1279.103 kb on + strand at 1279.103 kb on + strand at 1279.104 kb on - strand at 1279.116 kb on - strand at 1279.122 kb on + strand at 1279.197 kb on + strand at 1279.198 kb on - strand at 1279.199 kb on + strand at 1279.199 kb on + strand at 1279.199 kb on + strand at 1279.200 kb on - strand at 1279.200 kb on - strand at 1279.200 kb on - strand at 1279.200 kb on - strand at 1279.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 1,276,918 + -0.1 1,276,918 + -0.1 1,276,919 + +0.5 1,276,923 + -1.3 1,276,923 + +1.1 1,276,924 - +0.4 1,277,074 + SMc00606 0.17 +0.0 1,277,224 - SMc00606 0.37 -0.6 1,277,288 - SMc00606 0.45 -0.5 1,277,288 - SMc00606 0.45 +0.6 1,277,308 - SMc00606 0.48 -0.2 1,277,358 + SMc00606 0.54 -0.4 1,277,358 + SMc00606 0.54 -0.1 1,277,359 - SMc00606 0.54 +0.3 1,277,359 - SMc00606 0.54 +1.1 1,277,499 + SMc00606 0.73 -0.6 1,277,499 + SMc00606 0.73 +0.1 1,277,499 + SMc00606 0.73 +0.5 1,277,500 - SMc00606 0.73 +0.2 1,277,500 - SMc00606 0.73 -1.4 1,277,792 + +0.1 1,277,792 + -0.3 1,277,792 + +1.2 1,277,793 - -0.7 1,277,793 - -0.5 1,277,793 - +0.3 1,277,793 - -0.6 1,277,793 - +0.0 1,277,826 + SMc00607 0.15 -0.3 1,277,827 - SMc00607 0.16 -0.2 1,277,915 + SMc00607 0.35 -0.1 1,277,915 + SMc00607 0.35 -0.6 1,277,916 - SMc00607 0.36 +1.0 1,277,921 + SMc00607 0.37 +0.5 1,277,922 - SMc00607 0.37 +0.7 1,277,945 + SMc00607 0.42 +0.6 1,278,014 + SMc00607 0.58 -0.7 1,278,014 + SMc00607 0.58 +1.4 1,278,029 + SMc00607 0.61 -2.5 1,278,089 + SMc00607 0.75 +0.7 1,278,089 + SMc00607 0.75 +0.3 1,278,206 - -0.0 1,278,206 - +1.0 1,278,531 - SMc00608 0.32 -0.7 1,278,542 + SMc00608 0.33 +0.2 1,278,542 + SMc00608 0.33 +0.2 1,278,542 + SMc00608 0.33 -1.9 1,278,543 - SMc00608 0.33 +0.4 1,278,543 - SMc00608 0.33 -0.2 1,278,599 + SMc00608 0.40 -0.3 1,278,599 + SMc00608 0.40 +1.8 1,278,599 + SMc00608 0.40 +0.4 1,278,600 - SMc00608 0.40 +1.2 1,278,875 + SMc00608 0.71 -0.3 1,278,876 - SMc00608 0.72 -0.0 1,278,876 - SMc00608 0.72 +0.2 1,278,876 - SMc00608 0.72 -0.4 1,278,876 - SMc00608 0.72 -0.2 1,278,876 - SMc00608 0.72 -0.5 1,278,983 + SMc00608 0.84 -1.2 1,278,983 + SMc00608 0.84 +0.2 1,279,103 + -0.3 1,279,103 + +0.4 1,279,103 + -0.2 1,279,104 - +0.7 1,279,116 - +0.3 1,279,122 + -0.1 1,279,197 + +0.9 1,279,198 - -0.3 1,279,199 + -0.3 1,279,199 + +0.2 1,279,199 + +0.8 1,279,200 - +1.1 1,279,200 - +0.1 1,279,200 - +0.6 1,279,200 - +0.4 1,279,200 - +0.2
Or see this region's nucleotide sequence