Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00584 and SMc00585 are separated by 313 nucleotides SMc00585 and SMc00586 are separated by 19 nucleotides SMc00586 and SMc05005 are separated by 226 nucleotides
SMc00584: SMc00584 - hypothetical protein, at 1,254,682 to 1,255,854
SMc00584
SMc00585: SMc00585 - leucyl aminopeptidase, at 1,256,168 to 1,257,661
SMc00585
SMc00586: SMc00586 - DNA polymerase III subunit chi, at 1,257,681 to 1,258,130
SMc00586
SMc05005: SMc05005 - transposase, at 1,258,357 to 1,259,349
SMc05005
Position (kb)
1256
1257
1258 Strain fitness (log2 ratio)
-2
-1
0
1 at 1255.937 kb on - strand at 1255.937 kb on - strand at 1255.989 kb on - strand at 1255.989 kb on - strand at 1255.989 kb on - strand at 1255.991 kb on - strand at 1256.020 kb on - strand at 1256.020 kb on - strand at 1256.125 kb on + strand at 1256.567 kb on + strand, within SMc00585 at 1256.582 kb on + strand, within SMc00585 at 1256.680 kb on + strand, within SMc00585 at 1256.680 kb on + strand, within SMc00585 at 1256.748 kb on + strand, within SMc00585 at 1257.025 kb on + strand, within SMc00585 at 1257.256 kb on + strand, within SMc00585 at 1257.256 kb on + strand, within SMc00585 at 1257.323 kb on + strand, within SMc00585 at 1257.425 kb on + strand, within SMc00585 at 1257.425 kb on + strand, within SMc00585 at 1257.650 kb on + strand at 1258.278 kb on - strand at 1258.394 kb on + strand at 1258.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 1,255,937 - -2.7 1,255,937 - -0.2 1,255,989 - +0.2 1,255,989 - -2.2 1,255,989 - -0.8 1,255,991 - -0.2 1,256,020 - +0.2 1,256,020 - -0.1 1,256,125 + -0.1 1,256,567 + SMc00585 0.27 -1.5 1,256,582 + SMc00585 0.28 -0.6 1,256,680 + SMc00585 0.34 -0.8 1,256,680 + SMc00585 0.34 -0.8 1,256,748 + SMc00585 0.39 -0.8 1,257,025 + SMc00585 0.57 -0.3 1,257,256 + SMc00585 0.73 -0.5 1,257,256 + SMc00585 0.73 -0.8 1,257,323 + SMc00585 0.77 -2.3 1,257,425 + SMc00585 0.84 -0.8 1,257,425 + SMc00585 0.84 -0.5 1,257,650 + -0.1 1,258,278 - -0.5 1,258,394 + +0.5 1,258,400 + +0.8
Or see this region's nucleotide sequence