Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00467 and SMc00466 overlap by 4 nucleotides SMc00466 and SMc00548 are separated by 134 nucleotides SMc00548 and SMc00465 are separated by 39 nucleotides
SMc00467: SMc00467 - hypothetical protein, at 1,957,621 to 1,959,120
SMc00467
SMc00466: SMc00466 - hypothetical protein, at 1,959,117 to 1,960,196
SMc00466
SMc00548: SMc00548 - signal peptide protein, at 1,960,331 to 1,960,882
SMc00548
SMc00465: SMc00465 - 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, at 1,960,922 to 1,961,446
SMc00465
Position (kb)
1959
1960
1961 Strain fitness (log2 ratio)
-1
0
1 at 1958.236 kb on + strand, within SMc00467 at 1958.237 kb on - strand, within SMc00467 at 1958.407 kb on + strand, within SMc00467 at 1958.417 kb on - strand, within SMc00467 at 1958.417 kb on - strand, within SMc00467 at 1958.433 kb on - strand, within SMc00467 at 1959.230 kb on + strand, within SMc00466 at 1959.450 kb on + strand, within SMc00466 at 1959.846 kb on + strand, within SMc00466 at 1959.847 kb on - strand, within SMc00466 at 1959.886 kb on - strand, within SMc00466 at 1959.886 kb on - strand, within SMc00466 at 1960.880 kb on + strand at 1960.923 kb on + strand at 1960.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 1,958,236 + SMc00467 0.41 -1.1 1,958,237 - SMc00467 0.41 -0.2 1,958,407 + SMc00467 0.52 +0.1 1,958,417 - SMc00467 0.53 -0.6 1,958,417 - SMc00467 0.53 -0.5 1,958,433 - SMc00467 0.54 +0.9 1,959,230 + SMc00466 0.10 -0.7 1,959,450 + SMc00466 0.31 -0.6 1,959,846 + SMc00466 0.68 -0.8 1,959,847 - SMc00466 0.68 -0.7 1,959,886 - SMc00466 0.71 -0.5 1,959,886 - SMc00466 0.71 +0.1 1,960,880 + +0.1 1,960,923 + +0.1 1,960,923 + +1.0
Or see this region's nucleotide sequence