Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1583 and SMa1585 are separated by 120 nucleotides SMa1585 and SMa1586 are separated by 897 nucleotides
SMa1583: SMa1583 - CyaF5 adenylate cyclase, at 876,769 to 878,538
SMa1583
SMa1585: SMa1585 - hypothetical protein, at 878,659 to 878,961
SMa1585
SMa1586: SMa1586 - SyrB2 regulator, at 879,859 to 880,314
SMa1586
Position (kb) 878
879 Strain fitness (log2 ratio) -1
0
1 at 877.745 kb on + strand, within SMa1583 at 877.745 kb on + strand, within SMa1583 at 877.746 kb on - strand, within SMa1583 at 877.746 kb on - strand, within SMa1583 at 877.750 kb on + strand, within SMa1583 at 877.751 kb on - strand, within SMa1583 at 877.751 kb on - strand, within SMa1583 at 877.826 kb on - strand, within SMa1583 at 877.873 kb on - strand, within SMa1583 at 877.873 kb on - strand, within SMa1583 at 877.875 kb on + strand, within SMa1583 at 877.890 kb on - strand, within SMa1583 at 877.936 kb on + strand, within SMa1583 at 878.007 kb on + strand, within SMa1583 at 878.102 kb on + strand, within SMa1583 at 878.102 kb on + strand, within SMa1583 at 878.102 kb on + strand, within SMa1583 at 878.103 kb on - strand, within SMa1583 at 878.103 kb on - strand, within SMa1583 at 878.167 kb on + strand, within SMa1583 at 878.338 kb on + strand, within SMa1583 at 878.338 kb on + strand, within SMa1583 at 878.386 kb on - strand at 878.532 kb on + strand at 878.532 kb on + strand at 878.725 kb on + strand, within SMa1585 at 878.725 kb on + strand, within SMa1585 at 878.750 kb on + strand, within SMa1585 at 878.750 kb on + strand, within SMa1585 at 878.806 kb on - strand, within SMa1585 at 878.896 kb on + strand, within SMa1585 at 878.897 kb on - strand, within SMa1585 at 878.944 kb on + strand at 878.956 kb on - strand at 879.011 kb on - strand at 879.082 kb on - strand at 879.149 kb on - strand at 879.149 kb on - strand at 879.186 kb on + strand at 879.293 kb on - strand at 879.650 kb on + strand at 879.651 kb on - strand at 879.651 kb on - strand at 879.689 kb on + strand at 879.689 kb on + strand at 879.696 kb on + strand at 879.697 kb on - strand at 879.714 kb on + strand at 879.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 877,745 + SMa1583 0.55 +0.3 877,745 + SMa1583 0.55 +0.4 877,746 - SMa1583 0.55 +0.1 877,746 - SMa1583 0.55 -0.3 877,750 + SMa1583 0.55 +0.4 877,751 - SMa1583 0.55 +0.0 877,751 - SMa1583 0.55 -0.4 877,826 - SMa1583 0.60 -1.5 877,873 - SMa1583 0.62 +1.3 877,873 - SMa1583 0.62 +0.3 877,875 + SMa1583 0.62 +0.1 877,890 - SMa1583 0.63 -0.1 877,936 + SMa1583 0.66 +0.1 878,007 + SMa1583 0.70 -0.4 878,102 + SMa1583 0.75 -0.1 878,102 + SMa1583 0.75 -0.5 878,102 + SMa1583 0.75 +0.6 878,103 - SMa1583 0.75 -0.1 878,103 - SMa1583 0.75 -0.3 878,167 + SMa1583 0.79 -0.3 878,338 + SMa1583 0.89 +0.2 878,338 + SMa1583 0.89 -1.6 878,386 - +0.2 878,532 + +0.0 878,532 + -0.1 878,725 + SMa1585 0.22 -1.1 878,725 + SMa1585 0.22 -1.0 878,750 + SMa1585 0.30 +0.5 878,750 + SMa1585 0.30 -1.3 878,806 - SMa1585 0.49 -0.1 878,896 + SMa1585 0.78 -0.2 878,897 - SMa1585 0.79 -1.7 878,944 + -0.3 878,956 - -0.5 879,011 - -1.6 879,082 - +1.0 879,149 - +0.2 879,149 - -0.2 879,186 + -0.4 879,293 - -0.2 879,650 + +0.9 879,651 - -1.3 879,651 - -0.5 879,689 + -0.5 879,689 + +0.4 879,696 + -0.3 879,697 - +0.2 879,714 + +0.1 879,715 - -0.3
Or see this region's nucleotide sequence