Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21162 and SM_b21163 are separated by 197 nucleotides SM_b21163 and SM_b21164 are separated by 2 nucleotides SM_b21164 and SM_b21165 are separated by 1 nucleotides
SM_b21162: SM_b21162 - integral membrane transporter protein, at 906,757 to 907,971
_b21162
SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) <small>(from data)</small>, at 908,169 to 909,842
_b21163
SM_b21164: SM_b21164 - N-formylglutamate deformylase (EC 3.5.1.68) <small>(from data)</small>, at 909,845 to 910,660
_b21164
SM_b21165: SM_b21165 - Histidine ammonia-lyase (EC 4.3.1.3) <small>(from data)</small>, at 910,662 to 912,197
_b21165
Position (kb) 908
909
910 Strain fitness (log2 ratio) -1
0
1
2 at 907.403 kb on + strand, within SM_b21162 at 907.404 kb on - strand, within SM_b21162 at 907.404 kb on - strand, within SM_b21162 at 907.406 kb on + strand, within SM_b21162 at 907.406 kb on + strand, within SM_b21162 at 907.543 kb on - strand, within SM_b21162 at 907.608 kb on + strand, within SM_b21162 at 907.609 kb on - strand, within SM_b21162 at 907.609 kb on - strand, within SM_b21162 at 907.638 kb on - strand, within SM_b21162 at 907.639 kb on + strand, within SM_b21162 at 907.639 kb on + strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.691 kb on - strand, within SM_b21162 at 907.750 kb on + strand, within SM_b21162 at 907.751 kb on - strand, within SM_b21162 at 907.751 kb on - strand, within SM_b21162 at 907.889 kb on + strand at 907.890 kb on - strand at 908.164 kb on + strand at 908.164 kb on + strand at 908.165 kb on - strand at 908.165 kb on - strand at 908.221 kb on - strand at 908.316 kb on - strand at 908.396 kb on + strand, within SM_b21163 at 908.396 kb on + strand, within SM_b21163 at 908.396 kb on + strand, within SM_b21163 at 908.726 kb on - strand, within SM_b21163 at 908.798 kb on + strand, within SM_b21163 at 908.801 kb on - strand, within SM_b21163 at 908.801 kb on - strand, within SM_b21163 at 908.878 kb on + strand, within SM_b21163 at 909.025 kb on + strand, within SM_b21163 at 909.026 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.106 kb on - strand, within SM_b21163 at 909.397 kb on + strand, within SM_b21163 at 909.398 kb on - strand, within SM_b21163 at 909.430 kb on + strand, within SM_b21163 at 909.430 kb on + strand, within SM_b21163 at 909.431 kb on - strand, within SM_b21163 at 909.431 kb on - strand, within SM_b21163 at 909.460 kb on + strand, within SM_b21163 at 909.691 kb on + strand at 909.821 kb on + strand at 909.822 kb on - strand at 910.154 kb on - strand, within SM_b21164 at 910.325 kb on + strand, within SM_b21164 at 910.326 kb on - strand, within SM_b21164 at 910.326 kb on - strand, within SM_b21164 at 910.364 kb on - strand, within SM_b21164 at 910.454 kb on + strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.513 kb on - strand, within SM_b21164 at 910.759 kb on + strand at 910.759 kb on + strand at 910.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 907,403 + SM_b21162 0.53 +0.3 907,404 - SM_b21162 0.53 +0.7 907,404 - SM_b21162 0.53 +0.7 907,406 + SM_b21162 0.53 +0.2 907,406 + SM_b21162 0.53 +1.2 907,543 - SM_b21162 0.65 -0.2 907,608 + SM_b21162 0.70 +0.2 907,609 - SM_b21162 0.70 +0.1 907,609 - SM_b21162 0.70 +0.6 907,638 - SM_b21162 0.73 +0.1 907,639 + SM_b21162 0.73 -0.1 907,639 + SM_b21162 0.73 -0.2 907,640 - SM_b21162 0.73 +1.6 907,640 - SM_b21162 0.73 -0.0 907,640 - SM_b21162 0.73 -0.7 907,640 - SM_b21162 0.73 -0.0 907,691 - SM_b21162 0.77 -0.1 907,750 + SM_b21162 0.82 -0.2 907,751 - SM_b21162 0.82 -0.2 907,751 - SM_b21162 0.82 -0.0 907,889 + -1.1 907,890 - -0.2 908,164 + -1.6 908,164 + -0.2 908,165 - -0.4 908,165 - +0.1 908,221 - +0.1 908,316 - -0.9 908,396 + SM_b21163 0.14 -0.9 908,396 + SM_b21163 0.14 -1.1 908,396 + SM_b21163 0.14 -0.7 908,726 - SM_b21163 0.33 -1.2 908,798 + SM_b21163 0.38 -0.7 908,801 - SM_b21163 0.38 -0.4 908,801 - SM_b21163 0.38 +0.2 908,878 + SM_b21163 0.42 +0.3 909,025 + SM_b21163 0.51 -0.3 909,026 - SM_b21163 0.51 -0.4 909,106 - SM_b21163 0.56 -1.2 909,106 - SM_b21163 0.56 -0.2 909,106 - SM_b21163 0.56 -0.3 909,106 - SM_b21163 0.56 +0.1 909,106 - SM_b21163 0.56 -0.6 909,397 + SM_b21163 0.73 -0.6 909,398 - SM_b21163 0.73 -1.4 909,430 + SM_b21163 0.75 -0.8 909,430 + SM_b21163 0.75 -0.2 909,431 - SM_b21163 0.75 -0.9 909,431 - SM_b21163 0.75 -0.6 909,460 + SM_b21163 0.77 +0.0 909,691 + -1.5 909,821 + -0.3 909,822 - -1.0 910,154 - SM_b21164 0.38 +0.2 910,325 + SM_b21164 0.59 +0.0 910,326 - SM_b21164 0.59 -1.1 910,326 - SM_b21164 0.59 +0.1 910,364 - SM_b21164 0.64 -0.3 910,454 + SM_b21164 0.75 +1.4 910,455 - SM_b21164 0.75 +1.9 910,455 - SM_b21164 0.75 -0.6 910,455 - SM_b21164 0.75 +0.5 910,455 - SM_b21164 0.75 -0.1 910,513 - SM_b21164 0.82 -0.4 910,759 + -0.1 910,759 + +0.2 910,759 + -0.7
Or see this region's nucleotide sequence