Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20527 and SM_b20528 are separated by 79 nucleotides SM_b20528 and SM_b20529 overlap by 14 nucleotides SM_b20529 and SM_b20530 are separated by 32 nucleotides SM_b20530 and SM_b20531 are separated by 234 nucleotides
SM_b20527: SM_b20527 - hypothetical protein, at 552,144 to 552,578
_b20527
SM_b20528: SM_b20528 - hypothetical protein, at 552,658 to 553,458
_b20528
SM_b20529: SM_b20529 - hypothetical protein, at 553,445 to 554,374
_b20529
SM_b20530: SM_b20530 - hypothetical protein, at 554,407 to 554,745
_b20530
SM_b20531: SM_b20531 - RNA polymerase sigma factor, at 554,980 to 555,516
_b20531
Position (kb) 553
554
555 Strain fitness (log2 ratio) -1
0
1
2 at 552.880 kb on - strand, within SM_b20528 at 552.880 kb on - strand, within SM_b20528 at 553.059 kb on - strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.121 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.127 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.135 kb on + strand, within SM_b20528 at 553.160 kb on + strand, within SM_b20528 at 553.161 kb on - strand, within SM_b20528 at 553.288 kb on + strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.289 kb on - strand, within SM_b20528 at 553.446 kb on + strand at 553.532 kb on + strand at 553.547 kb on + strand, within SM_b20529 at 553.589 kb on + strand, within SM_b20529 at 553.589 kb on + strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.691 kb on - strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.743 kb on + strand, within SM_b20529 at 553.744 kb on - strand, within SM_b20529 at 553.748 kb on + strand, within SM_b20529 at 553.748 kb on + strand, within SM_b20529 at 553.749 kb on - strand, within SM_b20529 at 553.749 kb on - strand, within SM_b20529 at 553.881 kb on + strand, within SM_b20529 at 553.882 kb on - strand, within SM_b20529 at 553.928 kb on + strand, within SM_b20529 at 553.928 kb on + strand, within SM_b20529 at 553.928 kb on + strand at 553.972 kb on + strand, within SM_b20529 at 553.972 kb on + strand, within SM_b20529 at 553.972 kb on + strand, within SM_b20529 at 553.973 kb on - strand, within SM_b20529 at 553.974 kb on + strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 553.975 kb on - strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.001 kb on + strand, within SM_b20529 at 554.120 kb on - strand, within SM_b20529 at 554.151 kb on + strand, within SM_b20529 at 554.152 kb on - strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.205 kb on + strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.206 kb on - strand, within SM_b20529 at 554.517 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.809 kb on + strand at 554.809 kb on + strand at 554.810 kb on - strand at 554.810 kb on - strand at 554.823 kb on - strand at 554.877 kb on - strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 555.050 kb on - strand, within SM_b20531 at 555.050 kb on - strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.178 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 552,880 - SM_b20528 0.28 +0.0 552,880 - SM_b20528 0.28 -0.8 553,059 - SM_b20528 0.50 +0.1 553,121 + SM_b20528 0.58 +0.5 553,121 + SM_b20528 0.58 +0.4 553,127 + SM_b20528 0.59 +0.3 553,127 + SM_b20528 0.59 +0.2 553,135 + SM_b20528 0.60 +0.7 553,135 + SM_b20528 0.60 +0.9 553,160 + SM_b20528 0.63 -1.0 553,161 - SM_b20528 0.63 +0.2 553,288 + SM_b20528 0.79 -0.3 553,289 - SM_b20528 0.79 -1.3 553,289 - SM_b20528 0.79 -0.6 553,446 + -0.9 553,532 + +0.0 553,547 + SM_b20529 0.11 -0.0 553,589 + SM_b20529 0.15 +0.3 553,589 + SM_b20529 0.15 -0.2 553,691 - SM_b20529 0.26 -0.2 553,691 - SM_b20529 0.26 -0.7 553,691 - SM_b20529 0.26 +0.1 553,743 + SM_b20529 0.32 -1.0 553,743 + SM_b20529 0.32 -0.3 553,743 + SM_b20529 0.32 +0.3 553,743 + SM_b20529 0.32 -0.6 553,744 - SM_b20529 0.32 +2.3 553,748 + SM_b20529 0.33 -0.7 553,748 + SM_b20529 0.33 -0.5 553,749 - SM_b20529 0.33 +1.3 553,749 - SM_b20529 0.33 -0.0 553,881 + SM_b20529 0.47 -0.4 553,882 - SM_b20529 0.47 -0.4 553,928 + SM_b20529 0.52 +0.2 553,928 + SM_b20529 0.52 -0.3 553,928 + -1.2 553,972 + SM_b20529 0.57 -0.9 553,972 + SM_b20529 0.57 -0.1 553,972 + SM_b20529 0.57 -0.5 553,973 - SM_b20529 0.57 +0.0 553,974 + SM_b20529 0.57 +0.1 553,975 - SM_b20529 0.57 -0.6 553,975 - SM_b20529 0.57 -0.1 553,975 - SM_b20529 0.57 -0.4 554,001 + SM_b20529 0.60 -0.1 554,001 + SM_b20529 0.60 -1.3 554,001 + SM_b20529 0.60 +0.2 554,120 - SM_b20529 0.73 -1.1 554,151 + SM_b20529 0.76 -0.6 554,152 - SM_b20529 0.76 -0.1 554,205 + SM_b20529 0.82 +1.6 554,205 + SM_b20529 0.82 -0.6 554,205 + SM_b20529 0.82 -0.1 554,206 - SM_b20529 0.82 +0.4 554,206 - SM_b20529 0.82 +0.3 554,517 - SM_b20530 0.32 +0.4 554,595 - SM_b20530 0.55 -1.2 554,595 - SM_b20530 0.55 +1.3 554,595 - SM_b20530 0.55 -0.2 554,595 - SM_b20530 0.55 -0.1 554,595 - SM_b20530 0.55 -0.1 554,809 + +0.0 554,809 + -0.6 554,810 - +0.3 554,810 - -0.5 554,823 - +0.8 554,877 - -0.1 554,940 + +0.8 554,940 + -1.1 554,940 + -0.3 554,940 + -0.8 554,940 + -1.0 554,941 - -0.9 554,941 - -1.3 554,941 - -0.2 554,941 - +0.2 554,941 - -0.2 555,050 - SM_b20531 0.13 +1.6 555,050 - SM_b20531 0.13 -1.1 555,167 + SM_b20531 0.35 -0.1 555,167 + SM_b20531 0.35 -0.5 555,168 - SM_b20531 0.35 +0.4 555,168 - SM_b20531 0.35 +0.1 555,177 + SM_b20531 0.37 +0.8 555,177 + SM_b20531 0.37 -0.1 555,177 + SM_b20531 0.37 +0.6 555,177 + SM_b20531 0.37 +0.1 555,177 + SM_b20531 0.37 +2.3 555,178 - SM_b20531 0.37 -0.1 555,249 - SM_b20531 0.50 +0.2 555,249 - SM_b20531 0.50 +0.6
Or see this region's nucleotide sequence