Experiment: L-Citrulline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19075 and AO353_19080 are separated by 48 nucleotides AO353_19080 and AO353_19085 are separated by 77 nucleotides AO353_19085 and AO353_19090 are separated by 303 nucleotides AO353_19090 and AO353_19095 are separated by 106 nucleotides
AO353_19075: AO353_19075 - hypothetical protein, at 4,185,842 to 4,186,975
_19075
AO353_19080: AO353_19080 - elongation factor P, at 4,187,024 to 4,187,593
_19080
AO353_19085: AO353_19085 - organic hydroperoxide resistance protein, at 4,187,671 to 4,188,090
_19085
AO353_19090: AO353_19090 - MarR family transcriptional regulator, at 4,188,394 to 4,188,855
_19090
AO353_19095: AO353_19095 - hypothetical protein, at 4,188,962 to 4,189,711
_19095
Position (kb)
4187
4188
4189 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4186.958 kb on + strand at 4186.962 kb on + strand at 4186.976 kb on + strand at 4187.587 kb on + strand at 4187.591 kb on + strand at 4187.591 kb on + strand at 4187.591 kb on + strand at 4187.591 kb on + strand at 4187.591 kb on + strand at 4187.591 kb on + strand at 4187.591 kb on + strand at 4187.592 kb on - strand at 4187.592 kb on - strand at 4187.698 kb on + strand at 4187.698 kb on + strand at 4187.698 kb on + strand at 4187.698 kb on + strand at 4187.698 kb on + strand at 4187.698 kb on + strand at 4187.698 kb on + strand at 4187.698 kb on + strand at 4187.699 kb on - strand at 4187.699 kb on - strand at 4187.699 kb on - strand at 4187.699 kb on - strand at 4187.699 kb on - strand at 4187.699 kb on - strand at 4187.699 kb on - strand at 4187.724 kb on - strand, within AO353_19085 at 4187.785 kb on + strand, within AO353_19085 at 4187.785 kb on + strand, within AO353_19085 at 4187.785 kb on + strand, within AO353_19085 at 4187.786 kb on - strand, within AO353_19085 at 4187.786 kb on - strand, within AO353_19085 at 4187.786 kb on - strand, within AO353_19085 at 4187.786 kb on - strand, within AO353_19085 at 4188.075 kb on + strand at 4188.077 kb on + strand at 4188.077 kb on + strand at 4188.077 kb on + strand at 4188.077 kb on + strand at 4188.078 kb on - strand at 4188.078 kb on - strand at 4188.078 kb on - strand at 4188.078 kb on - strand at 4188.093 kb on + strand at 4188.093 kb on + strand at 4188.094 kb on - strand at 4188.094 kb on - strand at 4188.186 kb on + strand at 4188.228 kb on + strand at 4188.228 kb on + strand at 4188.228 kb on + strand at 4188.228 kb on + strand at 4188.228 kb on + strand at 4188.228 kb on + strand at 4188.229 kb on - strand at 4188.229 kb on - strand at 4188.229 kb on - strand at 4188.244 kb on + strand at 4188.244 kb on + strand at 4188.244 kb on + strand at 4188.244 kb on + strand at 4188.244 kb on + strand at 4188.245 kb on - strand at 4188.245 kb on - strand at 4188.245 kb on - strand at 4188.245 kb on - strand at 4188.253 kb on - strand at 4188.253 kb on - strand at 4188.253 kb on - strand at 4188.272 kb on - strand at 4188.272 kb on - strand at 4188.272 kb on - strand at 4188.291 kb on + strand at 4188.292 kb on - strand at 4188.292 kb on - strand at 4188.330 kb on + strand at 4188.330 kb on + strand at 4188.330 kb on + strand at 4188.330 kb on + strand at 4188.331 kb on - strand at 4188.331 kb on - strand at 4188.331 kb on - strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.340 kb on + strand at 4188.341 kb on - strand at 4188.710 kb on + strand, within AO353_19090 at 4188.710 kb on + strand, within AO353_19090 at 4188.719 kb on + strand, within AO353_19090 at 4188.753 kb on - strand, within AO353_19090 at 4188.753 kb on - strand, within AO353_19090 at 4188.860 kb on - strand at 4188.927 kb on + strand at 4188.927 kb on + strand at 4188.972 kb on + strand at 4188.972 kb on + strand at 4188.972 kb on + strand at 4188.972 kb on + strand at 4188.972 kb on + strand at 4188.972 kb on + strand at 4188.972 kb on + strand at 4188.973 kb on - strand at 4188.973 kb on - strand at 4188.973 kb on - strand at 4188.980 kb on + strand at 4188.980 kb on + strand at 4188.980 kb on + strand at 4188.980 kb on + strand at 4188.980 kb on + strand at 4188.980 kb on + strand at 4188.980 kb on + strand at 4188.980 kb on + strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand at 4188.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline remove 4,186,958 + -1.3 4,186,962 + -0.7 4,186,976 + -0.5 4,187,587 + -0.2 4,187,591 + -1.8 4,187,591 + -0.9 4,187,591 + -0.9 4,187,591 + -1.3 4,187,591 + -1.1 4,187,591 + -2.7 4,187,591 + -2.5 4,187,592 - -1.2 4,187,592 - -0.7 4,187,698 + -2.2 4,187,698 + +2.7 4,187,698 + +0.1 4,187,698 + -2.4 4,187,698 + -0.4 4,187,698 + +1.0 4,187,698 + +0.9 4,187,698 + -1.3 4,187,699 - +2.9 4,187,699 - -0.1 4,187,699 - -2.4 4,187,699 - +1.3 4,187,699 - +0.1 4,187,699 - -1.7 4,187,699 - +1.3 4,187,724 - AO353_19085 0.13 -1.2 4,187,785 + AO353_19085 0.27 -2.9 4,187,785 + AO353_19085 0.27 +2.1 4,187,785 + AO353_19085 0.27 -1.7 4,187,786 - AO353_19085 0.27 -0.9 4,187,786 - AO353_19085 0.27 -2.9 4,187,786 - AO353_19085 0.27 -2.6 4,187,786 - AO353_19085 0.27 -0.5 4,188,075 + +0.6 4,188,077 + +1.3 4,188,077 + -0.9 4,188,077 + -0.3 4,188,077 + -1.8 4,188,078 - +1.7 4,188,078 - -1.5 4,188,078 - +3.7 4,188,078 - +1.2 4,188,093 + -0.9 4,188,093 + -2.0 4,188,094 - -1.3 4,188,094 - +1.3 4,188,186 + -0.8 4,188,228 + +0.1 4,188,228 + -1.8 4,188,228 + -1.2 4,188,228 + +1.7 4,188,228 + -1.3 4,188,228 + -2.6 4,188,229 - -1.3 4,188,229 - -1.7 4,188,229 - +0.7 4,188,244 + -0.7 4,188,244 + +0.3 4,188,244 + +1.7 4,188,244 + +1.4 4,188,244 + -0.9 4,188,245 - +1.3 4,188,245 - +0.7 4,188,245 - +0.8 4,188,245 - -2.2 4,188,253 - -0.7 4,188,253 - +0.1 4,188,253 - -2.0 4,188,272 - +1.4 4,188,272 - -0.3 4,188,272 - +0.7 4,188,291 + -2.4 4,188,292 - -1.4 4,188,292 - +0.5 4,188,330 + +0.9 4,188,330 + +1.4 4,188,330 + +1.1 4,188,330 + -1.8 4,188,331 - +0.7 4,188,331 - +2.0 4,188,331 - -1.9 4,188,340 + -1.2 4,188,340 + +0.8 4,188,340 + -1.2 4,188,341 - -0.9 4,188,710 + AO353_19090 0.68 +1.7 4,188,710 + AO353_19090 0.68 -0.3 4,188,719 + AO353_19090 0.70 +0.1 4,188,753 - AO353_19090 0.78 -0.3 4,188,753 - AO353_19090 0.78 +1.7 4,188,860 - -0.7 4,188,927 + -0.9 4,188,927 + +0.5 4,188,972 + -1.3 4,188,972 + +1.2 4,188,972 + -0.8 4,188,972 + +0.8 4,188,972 + -0.2 4,188,972 + -0.7 4,188,972 + -1.9 4,188,973 - +0.2 4,188,973 - +1.2 4,188,973 - +3.1 4,188,980 + -0.3 4,188,980 + -1.7 4,188,980 + -1.3 4,188,980 + -0.8 4,188,980 + -0.4 4,188,980 + -1.3 4,188,980 + -2.2 4,188,980 + +1.7 4,188,981 - +1.9 4,188,981 - -1.7 4,188,981 - +0.8 4,188,981 - +1.7 4,188,981 - +0.5 4,188,981 - +0.4 4,188,981 - +1.8 4,188,981 - +1.4 4,188,981 - +2.0 4,188,981 - +1.2 4,188,981 - +2.1 4,188,981 - +1.8 4,188,981 - +0.3
Or see this region's nucleotide sequence