Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02445

Experiment: L-Citrulline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02440 and AO353_02445 are separated by 127 nucleotidesAO353_02445 and AO353_02450 are separated by 47 nucleotidesAO353_02450 and AO353_02455 overlap by 8 nucleotides AO353_02440: AO353_02440 - peptidase S41, at 519,349 to 521,469 _02440 AO353_02445: AO353_02445 - diguanylate phosphodiesterase, at 521,597 to 523,372 _02445 AO353_02450: AO353_02450 - hypothetical protein, at 523,420 to 523,794 _02450 AO353_02455: AO353_02455 - type IV secretion protein Rhs, at 523,787 to 528,595 _02455 Position (kb) 521 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 520.703 kb on + strand, within AO353_02440at 520.703 kb on + strand, within AO353_02440at 520.703 kb on + strand, within AO353_02440at 520.703 kb on + strand, within AO353_02440at 520.703 kb on + strand, within AO353_02440at 520.703 kb on + strand, within AO353_02440at 520.704 kb on - strand, within AO353_02440at 520.704 kb on - strand, within AO353_02440at 520.704 kb on - strand, within AO353_02440at 520.707 kb on + strand, within AO353_02440at 520.730 kb on + strand, within AO353_02440at 520.730 kb on + strand, within AO353_02440at 520.730 kb on + strand, within AO353_02440at 520.731 kb on - strand, within AO353_02440at 520.759 kb on + strand, within AO353_02440at 520.759 kb on + strand, within AO353_02440at 520.759 kb on + strand, within AO353_02440at 520.759 kb on + strand, within AO353_02440at 520.759 kb on + strand, within AO353_02440at 520.759 kb on + strand, within AO353_02440at 520.759 kb on + strand, within AO353_02440at 520.760 kb on - strand, within AO353_02440at 520.760 kb on - strand, within AO353_02440at 520.837 kb on + strand, within AO353_02440at 520.837 kb on + strand, within AO353_02440at 520.837 kb on + strand, within AO353_02440at 520.837 kb on + strand, within AO353_02440at 520.838 kb on - strand, within AO353_02440at 520.838 kb on - strand, within AO353_02440at 521.108 kb on - strand, within AO353_02440at 521.108 kb on - strand, within AO353_02440at 521.370 kb on + strandat 521.370 kb on + strandat 521.370 kb on + strandat 521.370 kb on + strandat 521.370 kb on + strandat 521.371 kb on - strandat 521.371 kb on - strandat 521.395 kb on + strandat 521.395 kb on + strandat 521.428 kb on + strandat 521.428 kb on + strandat 521.428 kb on + strandat 521.428 kb on + strandat 521.429 kb on - strandat 521.478 kb on + strandat 521.479 kb on - strandat 521.531 kb on + strandat 521.532 kb on - strandat 521.532 kb on - strandat 521.580 kb on + strandat 521.634 kb on + strandat 521.781 kb on + strand, within AO353_02445at 521.781 kb on + strand, within AO353_02445at 521.782 kb on - strand, within AO353_02445at 521.782 kb on - strand, within AO353_02445at 522.116 kb on + strand, within AO353_02445at 522.116 kb on + strand, within AO353_02445at 522.116 kb on + strand, within AO353_02445at 522.116 kb on + strand, within AO353_02445at 522.117 kb on - strand, within AO353_02445at 522.117 kb on - strand, within AO353_02445at 522.117 kb on - strand, within AO353_02445at 522.117 kb on - strand, within AO353_02445at 522.140 kb on - strand, within AO353_02445at 522.140 kb on - strand, within AO353_02445at 522.235 kb on + strand, within AO353_02445at 522.296 kb on + strand, within AO353_02445at 522.296 kb on + strand, within AO353_02445at 522.296 kb on + strand, within AO353_02445at 522.429 kb on + strand, within AO353_02445at 522.430 kb on - strand, within AO353_02445at 522.596 kb on - strand, within AO353_02445at 522.734 kb on + strand, within AO353_02445at 522.735 kb on - strand, within AO353_02445at 522.735 kb on - strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strandat 522.867 kb on + strand, within AO353_02445at 522.867 kb on + strand, within AO353_02445at 522.868 kb on - strand, within AO353_02445at 522.868 kb on - strand, within AO353_02445at 522.896 kb on + strand, within AO353_02445at 522.897 kb on - strand, within AO353_02445at 522.932 kb on - strand, within AO353_02445at 522.935 kb on + strand, within AO353_02445at 522.935 kb on + strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 522.936 kb on - strand, within AO353_02445at 523.124 kb on + strand, within AO353_02445at 523.125 kb on - strand, within AO353_02445at 523.166 kb on - strand, within AO353_02445at 523.227 kb on + strandat 523.227 kb on + strandat 523.227 kb on + strandat 523.227 kb on + strandat 523.228 kb on - strandat 523.228 kb on - strandat 523.228 kb on - strandat 523.228 kb on - strandat 523.321 kb on + strandat 523.321 kb on + strandat 523.322 kb on - strandat 523.322 kb on - strandat 523.322 kb on - strandat 523.325 kb on + strandat 523.325 kb on + strandat 523.325 kb on + strandat 523.326 kb on - strandat 523.326 kb on - strandat 523.326 kb on - strandat 523.336 kb on + strandat 523.363 kb on + strandat 523.363 kb on + strandat 523.450 kb on + strandat 523.451 kb on - strandat 523.541 kb on - strand, within AO353_02450at 523.544 kb on + strand, within AO353_02450at 523.545 kb on - strand, within AO353_02450at 523.658 kb on + strand, within AO353_02450at 523.659 kb on - strand, within AO353_02450at 523.659 kb on - strand, within AO353_02450at 523.659 kb on - strand, within AO353_02450at 523.670 kb on - strand, within AO353_02450at 523.677 kb on + strand, within AO353_02450at 523.678 kb on - strand, within AO353_02450at 523.691 kb on + strand, within AO353_02450at 523.691 kb on + strand, within AO353_02450at 523.692 kb on - strand, within AO353_02450at 523.692 kb on - strand, within AO353_02450at 523.692 kb on - strand, within AO353_02450at 523.707 kb on + strand, within AO353_02450at 523.707 kb on + strand, within AO353_02450at 523.707 kb on + strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.708 kb on - strand, within AO353_02450at 523.768 kb on + strandat 523.783 kb on + strandat 523.783 kb on + strandat 523.784 kb on - strandat 523.784 kb on - strandat 523.784 kb on - strandat 523.788 kb on + strandat 523.789 kb on - strandat 523.789 kb on - strandat 523.814 kb on - strandat 523.814 kb on - strandat 523.949 kb on + strandat 524.031 kb on + strandat 524.031 kb on + strandat 524.140 kb on + strandat 524.141 kb on - strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.206 kb on + strandat 524.207 kb on - strandat 524.207 kb on - strandat 524.207 kb on - strandat 524.207 kb on - strandat 524.268 kb on + strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.269 kb on - strand, within AO353_02455at 524.274 kb on + strand, within AO353_02455at 524.340 kb on + strand, within AO353_02455at 524.340 kb on + strand, within AO353_02455at 524.340 kb on + strand, within AO353_02455at 524.341 kb on - strand, within AO353_02455at 524.358 kb on + strand, within AO353_02455at 524.359 kb on - strand, within AO353_02455at 524.359 kb on - strand, within AO353_02455at 524.359 kb on - strand, within AO353_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline
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520,703 + AO353_02440 0.64 -1.5
520,703 + AO353_02440 0.64 +0.8
520,703 + AO353_02440 0.64 -0.6
520,703 + AO353_02440 0.64 -1.4
520,703 + AO353_02440 0.64 +2.1
520,703 + AO353_02440 0.64 -0.5
520,704 - AO353_02440 0.64 -0.5
520,704 - AO353_02440 0.64 +0.2
520,704 - AO353_02440 0.64 -1.4
520,707 + AO353_02440 0.64 +2.6
520,730 + AO353_02440 0.65 -1.2
520,730 + AO353_02440 0.65 +0.2
520,730 + AO353_02440 0.65 +1.2
520,731 - AO353_02440 0.65 -0.4
520,759 + AO353_02440 0.66 +0.9
520,759 + AO353_02440 0.66 -0.8
520,759 + AO353_02440 0.66 +0.6
520,759 + AO353_02440 0.66 -0.8
520,759 + AO353_02440 0.66 -0.5
520,759 + AO353_02440 0.66 -0.8
520,759 + AO353_02440 0.66 +2.1
520,760 - AO353_02440 0.67 -2.8
520,760 - AO353_02440 0.67 +0.8
520,837 + AO353_02440 0.70 -2.0
520,837 + AO353_02440 0.70 -0.2
520,837 + AO353_02440 0.70 -0.8
520,837 + AO353_02440 0.70 +0.2
520,838 - AO353_02440 0.70 -0.8
520,838 - AO353_02440 0.70 -1.2
521,108 - AO353_02440 0.83 -0.5
521,108 - AO353_02440 0.83 +0.9
521,370 + -0.2
521,370 + -0.0
521,370 + -1.9
521,370 + -2.1
521,370 + +0.2
521,371 - +0.2
521,371 - +0.6
521,395 + -1.7
521,395 + +0.8
521,428 + -1.2
521,428 + -2.2
521,428 + -1.0
521,428 + -0.2
521,429 - -1.8
521,478 + +0.6
521,479 - +1.2
521,531 + -1.2
521,532 - -0.3
521,532 - -0.8
521,580 + +1.0
521,634 + +1.2
521,781 + AO353_02445 0.10 +1.6
521,781 + AO353_02445 0.10 -1.2
521,782 - AO353_02445 0.10 -1.1
521,782 - AO353_02445 0.10 +1.8
522,116 + AO353_02445 0.29 +0.4
522,116 + AO353_02445 0.29 -1.0
522,116 + AO353_02445 0.29 -1.0
522,116 + AO353_02445 0.29 -0.3
522,117 - AO353_02445 0.29 -0.7
522,117 - AO353_02445 0.29 +1.1
522,117 - AO353_02445 0.29 -0.8
522,117 - AO353_02445 0.29 -0.2
522,140 - AO353_02445 0.31 -0.5
522,140 - AO353_02445 0.31 -0.8
522,235 + AO353_02445 0.36 -0.5
522,296 + AO353_02445 0.39 -3.0
522,296 + AO353_02445 0.39 -0.2
522,296 + AO353_02445 0.39 +0.2
522,429 + AO353_02445 0.47 -1.4
522,430 - AO353_02445 0.47 -0.2
522,596 - AO353_02445 0.56 +0.2
522,734 + AO353_02445 0.64 +1.2
522,735 - AO353_02445 0.64 +2.0
522,735 - AO353_02445 0.64 -0.6
522,867 + AO353_02445 0.72 +0.8
522,867 + AO353_02445 0.72 -1.4
522,867 + AO353_02445 0.72 +0.5
522,867 + +1.5
522,867 + AO353_02445 0.72 -0.0
522,867 + AO353_02445 0.72 +0.6
522,868 - AO353_02445 0.72 +0.5
522,868 - AO353_02445 0.72 -0.4
522,896 + AO353_02445 0.73 -1.0
522,897 - AO353_02445 0.73 -1.0
522,932 - AO353_02445 0.75 +1.7
522,935 + AO353_02445 0.75 -0.5
522,935 + AO353_02445 0.75 -1.1
522,936 - AO353_02445 0.75 +1.6
522,936 - AO353_02445 0.75 +1.3
522,936 - AO353_02445 0.75 -0.3
522,936 - AO353_02445 0.75 +2.1
522,936 - AO353_02445 0.75 +1.2
522,936 - AO353_02445 0.75 -1.7
523,124 + AO353_02445 0.86 +1.6
523,125 - AO353_02445 0.86 -1.2
523,166 - AO353_02445 0.88 -0.4
523,227 + -1.4
523,227 + +0.2
523,227 + -1.9
523,227 + -2.5
523,228 - -0.0
523,228 - -0.5
523,228 - -2.2
523,228 - +0.8
523,321 + +0.1
523,321 + +2.0
523,322 - +1.2
523,322 - -0.5
523,322 - +1.3
523,325 + +0.7
523,325 + -0.4
523,325 + +1.8
523,326 - +0.2
523,326 - +2.5
523,326 - +0.8
523,336 + +0.2
523,363 + -0.5
523,363 + +0.3
523,450 + -2.0
523,451 - -0.8
523,541 - AO353_02450 0.32 -1.0
523,544 + AO353_02450 0.33 +1.2
523,545 - AO353_02450 0.33 +1.1
523,658 + AO353_02450 0.63 +0.7
523,659 - AO353_02450 0.64 -0.5
523,659 - AO353_02450 0.64 -0.8
523,659 - AO353_02450 0.64 +0.4
523,670 - AO353_02450 0.67 -2.0
523,677 + AO353_02450 0.69 -0.8
523,678 - AO353_02450 0.69 +1.8
523,691 + AO353_02450 0.72 +0.8
523,691 + AO353_02450 0.72 +0.5
523,692 - AO353_02450 0.73 +2.5
523,692 - AO353_02450 0.73 +1.8
523,692 - AO353_02450 0.73 -1.9
523,707 + AO353_02450 0.77 -0.5
523,707 + AO353_02450 0.77 -1.2
523,707 + AO353_02450 0.77 +1.1
523,708 - AO353_02450 0.77 +0.2
523,708 - AO353_02450 0.77 -1.0
523,708 - AO353_02450 0.77 +0.2
523,708 - AO353_02450 0.77 -0.4
523,708 - AO353_02450 0.77 +1.2
523,768 + +1.8
523,783 + -0.8
523,783 + +0.4
523,784 - +0.0
523,784 - -0.2
523,784 - -0.2
523,788 + +0.2
523,789 - -1.4
523,789 - +0.1
523,814 - +1.1
523,814 - -1.9
523,949 + -1.5
524,031 + +0.8
524,031 + +0.7
524,140 + +1.2
524,141 - +0.1
524,206 + +1.1
524,206 + -1.4
524,206 + +1.6
524,206 + -0.8
524,206 + -1.7
524,207 - -0.2
524,207 - -1.7
524,207 - +1.8
524,207 - -0.8
524,268 + AO353_02455 0.10 -0.8
524,269 - AO353_02455 0.10 -0.9
524,269 - AO353_02455 0.10 +0.9
524,269 - AO353_02455 0.10 +0.1
524,269 - AO353_02455 0.10 +0.3
524,274 + AO353_02455 0.10 -1.4
524,340 + AO353_02455 0.11 -0.8
524,340 + AO353_02455 0.11 -1.8
524,340 + AO353_02455 0.11 +0.2
524,341 - AO353_02455 0.12 -0.6
524,358 + AO353_02455 0.12 +1.4
524,359 - AO353_02455 0.12 -0.8
524,359 - AO353_02455 0.12 -0.1
524,359 - AO353_02455 0.12 -0.1

Or see this region's nucleotide sequence