Strain Fitness in Sinorhizobium meliloti 1021 around SMc01934

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01932 and SMc01933 overlap by 7 nucleotidesSMc01933 and SMc01934 are separated by 710 nucleotidesSMc01934 and SMc01935 are separated by 104 nucleotides SMc01932: SMc01932 - hypothetical protein, at 1,397,530 to 1,397,895 SMc01932 SMc01933: SMc01933 - hypothetical protein, at 1,397,889 to 1,398,104 SMc01933 SMc01934: SMc01934 - prolyl-tRNA synthetase, at 1,398,815 to 1,400,143 SMc01934 SMc01935: SMc01935 - hypothetical protein, at 1,400,248 to 1,401,474 SMc01935 Position (kb) 1398 1399 1400 1401Strain fitness (log2 ratio) -2 -1 0 1 2at 1397.868 kb on + strandat 1397.868 kb on + strandat 1397.874 kb on + strandat 1397.891 kb on - strandat 1397.996 kb on - strand, within SMc01933at 1397.996 kb on - strand, within SMc01933at 1398.127 kb on + strandat 1398.127 kb on + strandat 1398.127 kb on + strandat 1398.128 kb on - strandat 1398.128 kb on - strandat 1398.131 kb on + strandat 1398.324 kb on + strandat 1398.324 kb on - strandat 1398.359 kb on - strandat 1398.359 kb on - strandat 1398.582 kb on - strandat 1398.643 kb on + strandat 1398.784 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,397,868 + +0.3
1,397,868 + -0.2
1,397,874 + +0.6
1,397,891 - -2.1
1,397,996 - SMc01933 0.50 +0.7
1,397,996 - SMc01933 0.50 -0.2
1,398,127 + -0.9
1,398,127 + -0.6
1,398,127 + +2.3
1,398,128 - -0.6
1,398,128 - +0.2
1,398,131 + +0.7
1,398,324 + -0.5
1,398,324 - +0.2
1,398,359 - +0.1
1,398,359 - -0.2
1,398,582 - -0.6
1,398,643 + -0.0
1,398,784 + +0.7

Or see this region's nucleotide sequence