Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00794 and SMc00795 are separated by 524 nucleotides SMc00795 and SMc00796 are separated by 710 nucleotides
SMc00794: SMc00794 - two-component response regulator, at 814,780 to 815,577
SMc00794
SMc00795: SMc00795 - hypothetical protein, at 816,102 to 816,350
SMc00795
SMc00796: SMc00796 - hypothetical protein, at 817,061 to 817,225
SMc00796
Position (kb) 816
817 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.528 kb on + strand at 815.541 kb on - strand at 815.579 kb on + strand at 815.590 kb on - strand at 815.594 kb on + strand at 815.595 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.604 kb on - strand at 815.604 kb on - strand at 815.637 kb on + strand at 815.637 kb on + strand at 815.659 kb on + strand at 815.935 kb on - strand at 816.100 kb on + strand at 816.142 kb on + strand, within SMc00795 at 816.152 kb on - strand, within SMc00795 at 816.152 kb on - strand, within SMc00795 at 816.237 kb on + strand, within SMc00795 at 816.339 kb on + strand at 816.362 kb on - strand at 816.550 kb on + strand at 816.551 kb on - strand at 816.551 kb on - strand at 816.646 kb on + strand at 816.705 kb on + strand at 816.749 kb on + strand at 816.750 kb on - strand at 816.750 kb on - strand at 816.750 kb on - strand at 816.752 kb on - strand at 816.752 kb on - strand at 816.783 kb on + strand at 816.814 kb on + strand at 816.827 kb on + strand at 816.911 kb on - strand at 816.911 kb on - strand at 816.912 kb on + strand at 817.056 kb on - strand at 817.067 kb on + strand at 817.067 kb on + strand at 817.070 kb on + strand at 817.071 kb on - strand at 817.179 kb on + strand, within SMc00796 at 817.180 kb on - strand, within SMc00796 at 817.180 kb on - strand, within SMc00796 at 817.180 kb on - strand, within SMc00796 at 817.200 kb on + strand, within SMc00796
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 815,486 + SMc00794 0.88 +0.0 815,486 + SMc00794 0.88 +0.3 815,486 + SMc00794 0.88 +0.5 815,486 + SMc00794 0.88 +0.1 815,486 + SMc00794 0.88 -0.0 815,486 + SMc00794 0.88 +0.3 815,486 + -0.3 815,487 - SMc00794 0.89 -0.1 815,487 - SMc00794 0.89 +1.1 815,487 - SMc00794 0.89 +0.6 815,487 - SMc00794 0.89 +0.2 815,487 - SMc00794 0.89 +0.1 815,487 - SMc00794 0.89 +0.1 815,487 - SMc00794 0.89 +1.3 815,528 + +0.1 815,541 - -0.3 815,579 + -0.1 815,590 - -1.3 815,594 + +2.1 815,595 - -0.2 815,598 - +0.2 815,598 - -0.4 815,598 - -0.5 815,598 - -0.1 815,603 + +0.2 815,603 + -0.1 815,603 + +0.3 815,603 + +0.5 815,603 + -0.1 815,604 - +0.7 815,604 - +0.7 815,637 + +1.7 815,637 + +0.9 815,659 + +0.4 815,935 - -0.1 816,100 + +0.3 816,142 + SMc00795 0.16 -0.9 816,152 - SMc00795 0.20 -0.4 816,152 - SMc00795 0.20 -2.0 816,237 + SMc00795 0.54 -0.2 816,339 + -0.5 816,362 - -0.2 816,550 + +0.7 816,551 - -0.5 816,551 - -0.9 816,646 + -0.5 816,705 + +3.3 816,749 + -0.2 816,750 - -0.1 816,750 - -0.5 816,750 - -0.3 816,752 - -0.6 816,752 - -0.5 816,783 + -0.0 816,814 + +0.9 816,827 + +0.7 816,911 - +0.2 816,911 - +0.6 816,912 + +0.9 817,056 - -1.5 817,067 + +0.4 817,067 + +0.0 817,070 + +0.3 817,071 - -0.2 817,179 + SMc00796 0.72 +0.5 817,180 - SMc00796 0.72 -0.3 817,180 - SMc00796 0.72 +0.0 817,180 - SMc00796 0.72 +0.1 817,200 + SMc00796 0.84 -0.1
Or see this region's nucleotide sequence