Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1711 and SMa1715 are separated by 864 nucleotides SMa1715 and SMa1717 are separated by 72 nucleotides
SMa1711: SMa1711 - arginase, at 963,647 to 964,540
SMa1711
SMa1715: SMa1715 - AdeC3 adenine deaminase, at 965,405 to 967,192
SMa1715
SMa1717: SMa1717 - Permease, at 967,265 to 968,665
SMa1717
Position (kb) 965
966
967
968 Strain fitness (log2 ratio) -2
-1
0
1 at 964.455 kb on - strand at 964.506 kb on + strand at 964.806 kb on + strand at 964.806 kb on + strand at 965.137 kb on + strand at 965.137 kb on + strand at 965.138 kb on - strand at 965.214 kb on + strand at 965.292 kb on + strand at 965.331 kb on - strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.336 kb on + strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.337 kb on - strand at 965.382 kb on + strand at 965.471 kb on + strand at 965.471 kb on + strand at 965.472 kb on - strand at 965.472 kb on - strand at 965.521 kb on + strand at 965.522 kb on - strand at 965.522 kb on - strand at 965.524 kb on + strand at 965.524 kb on + strand at 965.524 kb on + strand at 965.525 kb on - strand at 965.716 kb on + strand, within SMa1715 at 965.737 kb on + strand, within SMa1715 at 965.737 kb on + strand, within SMa1715 at 965.737 kb on + strand, within SMa1715 at 965.737 kb on + strand, within SMa1715 at 965.738 kb on - strand, within SMa1715 at 965.889 kb on - strand, within SMa1715 at 965.889 kb on - strand, within SMa1715 at 966.063 kb on + strand, within SMa1715 at 966.126 kb on - strand, within SMa1715 at 966.126 kb on - strand, within SMa1715 at 966.231 kb on + strand, within SMa1715 at 966.389 kb on - strand, within SMa1715 at 966.522 kb on + strand, within SMa1715 at 966.523 kb on - strand, within SMa1715 at 966.558 kb on + strand, within SMa1715 at 966.558 kb on + strand, within SMa1715 at 966.559 kb on - strand, within SMa1715 at 966.559 kb on - strand, within SMa1715 at 967.144 kb on + strand at 967.154 kb on + strand at 967.360 kb on + strand at 967.361 kb on - strand at 967.581 kb on - strand, within SMa1717 at 967.594 kb on + strand, within SMa1717 at 967.650 kb on + strand, within SMa1717 at 967.650 kb on + strand, within SMa1717 at 967.650 kb on + strand, within SMa1717 at 967.839 kb on + strand, within SMa1717 at 968.036 kb on + strand, within SMa1717 at 968.036 kb on + strand, within SMa1717 at 968.048 kb on + strand, within SMa1717 at 968.125 kb on + strand, within SMa1717 at 968.126 kb on - strand, within SMa1717
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 964,455 - +0.3 964,506 + -0.2 964,806 + -0.9 964,806 + +0.6 965,137 + +0.1 965,137 + -0.4 965,138 - -0.1 965,214 + +0.2 965,292 + +0.0 965,331 - -1.1 965,336 + -0.3 965,336 + +1.5 965,336 + +0.7 965,336 + -1.9 965,336 + +0.0 965,336 + +0.3 965,337 - -0.1 965,337 - -0.6 965,337 - -0.7 965,337 - +0.3 965,337 - +0.5 965,382 + +0.2 965,471 + +0.7 965,471 + +0.3 965,472 - -0.7 965,472 - +0.4 965,521 + +0.4 965,522 - -0.4 965,522 - +0.1 965,524 + -0.4 965,524 + +0.8 965,524 + +1.6 965,525 - +0.3 965,716 + SMa1715 0.17 +0.9 965,737 + SMa1715 0.19 +0.5 965,737 + SMa1715 0.19 +0.7 965,737 + SMa1715 0.19 +1.2 965,737 + SMa1715 0.19 +0.3 965,738 - SMa1715 0.19 +0.4 965,889 - SMa1715 0.27 +0.8 965,889 - SMa1715 0.27 +1.1 966,063 + SMa1715 0.37 +0.4 966,126 - SMa1715 0.40 -0.5 966,126 - SMa1715 0.40 +0.1 966,231 + SMa1715 0.46 +0.0 966,389 - SMa1715 0.55 -0.4 966,522 + SMa1715 0.62 +0.0 966,523 - SMa1715 0.63 -2.4 966,558 + SMa1715 0.64 -1.3 966,558 + SMa1715 0.64 -2.7 966,559 - SMa1715 0.65 +0.4 966,559 - SMa1715 0.65 -1.2 967,144 + +0.4 967,154 + -0.8 967,360 + -0.0 967,361 - -0.4 967,581 - SMa1717 0.23 +0.3 967,594 + SMa1717 0.23 +1.2 967,650 + SMa1717 0.27 -1.7 967,650 + SMa1717 0.27 -2.5 967,650 + SMa1717 0.27 -0.4 967,839 + SMa1717 0.41 -0.5 968,036 + SMa1717 0.55 -0.7 968,036 + SMa1717 0.55 +0.3 968,048 + SMa1717 0.56 +0.9 968,125 + SMa1717 0.61 -0.0 968,126 - SMa1717 0.61 -0.4
Or see this region's nucleotide sequence