Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21112

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21110 and SM_b21111 overlap by 4 nucleotidesSM_b21111 and SM_b21112 are separated by 22 nucleotidesSM_b21112 and SM_b21113 are separated by 123 nucleotides SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism (from data), at 751,761 to 752,222 _b21110 SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953 _b21111 SM_b21112: SM_b21112 - L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase (from data), at 752,976 to 753,821 _b21112 SM_b21113: SM_b21113 - hypothetical protein, at 753,945 to 755,222 _b21113 Position (kb) 752 753 754Strain fitness (log2 ratio) -2 -1 0 1at 752.008 kb on - strand, within SM_b21110at 752.008 kb on - strand, within SM_b21110at 752.054 kb on + strand, within SM_b21110at 752.055 kb on - strand, within SM_b21110at 752.213 kb on + strandat 752.213 kb on + strandat 752.214 kb on - strandat 752.254 kb on - strandat 752.274 kb on + strandat 752.274 kb on + strandat 752.275 kb on - strandat 752.275 kb on - strandat 752.714 kb on + strand, within SM_b21111at 752.714 kb on + strand, within SM_b21111at 752.715 kb on - strandat 752.718 kb on + strand, within SM_b21111at 752.718 kb on + strand, within SM_b21111at 752.805 kb on - strand, within SM_b21111at 752.805 kb on - strand, within SM_b21111at 752.889 kb on - strandat 752.889 kb on - strandat 752.907 kb on - strandat 752.907 kb on - strandat 752.925 kb on - strandat 752.992 kb on - strandat 753.064 kb on + strand, within SM_b21112at 753.213 kb on + strand, within SM_b21112at 753.213 kb on + strand, within SM_b21112at 753.384 kb on + strand, within SM_b21112at 753.385 kb on - strand, within SM_b21112at 753.423 kb on + strand, within SM_b21112at 753.423 kb on + strand, within SM_b21112at 753.628 kb on - strand, within SM_b21112at 753.651 kb on + strand, within SM_b21112at 753.651 kb on + strand, within SM_b21112at 753.687 kb on - strand, within SM_b21112at 753.776 kb on - strandat 753.824 kb on + strandat 753.824 kb on + strandat 753.825 kb on - strandat 753.932 kb on + strandat 753.932 kb on + strandat 753.933 kb on - strandat 753.933 kb on - strandat 754.039 kb on - strandat 754.050 kb on + strandat 754.050 kb on + strandat 754.051 kb on - strandat 754.051 kb on - strandat 754.051 kb on - strandat 754.108 kb on + strand, within SM_b21113at 754.126 kb on + strand, within SM_b21113at 754.126 kb on + strand, within SM_b21113at 754.126 kb on + strand, within SM_b21113at 754.126 kb on + strand, within SM_b21113at 754.127 kb on - strand, within SM_b21113at 754.127 kb on - strand, within SM_b21113at 754.127 kb on - strand, within SM_b21113at 754.127 kb on - strand, within SM_b21113at 754.127 kb on - strand, within SM_b21113at 754.289 kb on - strand, within SM_b21113at 754.395 kb on + strand, within SM_b21113at 754.395 kb on + strand, within SM_b21113at 754.396 kb on - strand, within SM_b21113at 754.503 kb on + strand, within SM_b21113at 754.503 kb on + strand, within SM_b21113at 754.503 kb on + strand, within SM_b21113at 754.504 kb on - strand, within SM_b21113at 754.671 kb on + strand, within SM_b21113at 754.672 kb on - strand, within SM_b21113

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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752,008 - SM_b21110 0.53 -0.5
752,008 - SM_b21110 0.53 -1.1
752,054 + SM_b21110 0.63 +0.8
752,055 - SM_b21110 0.64 -0.0
752,213 + +0.2
752,213 + -0.6
752,214 - +0.0
752,254 - -0.2
752,274 + +0.2
752,274 + +0.5
752,275 - -0.2
752,275 - -0.3
752,714 + SM_b21111 0.67 +0.8
752,714 + SM_b21111 0.67 +1.2
752,715 - -0.1
752,718 + SM_b21111 0.68 -0.0
752,718 + SM_b21111 0.68 -2.4
752,805 - SM_b21111 0.80 +0.4
752,805 - SM_b21111 0.80 -0.2
752,889 - -0.1
752,889 - -0.4
752,907 - -0.2
752,907 - +0.1
752,925 - +1.6
752,992 - -0.2
753,064 + SM_b21112 0.10 -0.1
753,213 + SM_b21112 0.28 -0.1
753,213 + SM_b21112 0.28 +0.3
753,384 + SM_b21112 0.48 +0.9
753,385 - SM_b21112 0.48 +1.1
753,423 + SM_b21112 0.53 +0.9
753,423 + SM_b21112 0.53 -0.2
753,628 - SM_b21112 0.77 -1.7
753,651 + SM_b21112 0.80 +1.1
753,651 + SM_b21112 0.80 +1.0
753,687 - SM_b21112 0.84 -0.1
753,776 - -0.3
753,824 + -0.3
753,824 + +0.1
753,825 - +1.0
753,932 + -0.1
753,932 + +1.1
753,933 - -0.3
753,933 - -0.8
754,039 - -0.3
754,050 + +0.4
754,050 + -0.1
754,051 - +0.9
754,051 - -0.8
754,051 - -0.8
754,108 + SM_b21113 0.13 -0.3
754,126 + SM_b21113 0.14 -0.3
754,126 + SM_b21113 0.14 -0.6
754,126 + SM_b21113 0.14 -1.8
754,126 + SM_b21113 0.14 -0.7
754,127 - SM_b21113 0.14 -0.2
754,127 - SM_b21113 0.14 -0.5
754,127 - SM_b21113 0.14 +0.2
754,127 - SM_b21113 0.14 -0.3
754,127 - SM_b21113 0.14 +0.5
754,289 - SM_b21113 0.27 -0.0
754,395 + SM_b21113 0.35 -0.1
754,395 + SM_b21113 0.35 -0.3
754,396 - SM_b21113 0.35 -0.4
754,503 + SM_b21113 0.44 +0.3
754,503 + SM_b21113 0.44 -1.7
754,503 + SM_b21113 0.44 +1.0
754,504 - SM_b21113 0.44 -0.1
754,671 + SM_b21113 0.57 +1.2
754,672 - SM_b21113 0.57 +0.3

Or see this region's nucleotide sequence