Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25775

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25765 and AO353_25770 are separated by 129 nucleotidesAO353_25770 and AO353_25775 overlap by 4 nucleotidesAO353_25775 and AO353_25780 are separated by 331 nucleotidesAO353_25780 and AO353_25785 are separated by 1 nucleotides AO353_25765: AO353_25765 - chemotaxis protein, at 5,679,857 to 5,681,491 _25765 AO353_25770: AO353_25770 - aminotransferase, at 5,681,621 to 5,682,184 _25770 AO353_25775: AO353_25775 - N-acetylglucosamine-6-sulfatase, at 5,682,181 to 5,682,705 _25775 AO353_25780: AO353_25780 - hypothetical protein, at 5,683,037 to 5,683,474 _25780 AO353_25785: AO353_25785 - adhesin, at 5,683,476 to 5,684,048 _25785 Position (kb) 5682 5683Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5681.287 kb on + strand, within AO353_25765at 5681.288 kb on - strand, within AO353_25765at 5681.288 kb on - strand, within AO353_25765at 5681.288 kb on - strand, within AO353_25765at 5681.288 kb on - strand, within AO353_25765at 5681.489 kb on + strandat 5681.532 kb on + strandat 5681.532 kb on + strandat 5681.533 kb on - strandat 5681.582 kb on + strandat 5681.582 kb on + strandat 5681.583 kb on - strandat 5681.729 kb on + strand, within AO353_25770at 5681.729 kb on + strand, within AO353_25770at 5681.729 kb on + strand, within AO353_25770at 5681.729 kb on + strand, within AO353_25770at 5681.730 kb on - strand, within AO353_25770at 5681.730 kb on - strand, within AO353_25770at 5681.730 kb on - strand, within AO353_25770at 5681.730 kb on - strand, within AO353_25770at 5681.730 kb on - strand, within AO353_25770at 5681.759 kb on + strand, within AO353_25770at 5681.759 kb on + strand, within AO353_25770at 5681.760 kb on - strand, within AO353_25770at 5681.786 kb on + strand, within AO353_25770at 5681.786 kb on + strand, within AO353_25770at 5681.804 kb on + strand, within AO353_25770at 5682.079 kb on + strand, within AO353_25770at 5682.080 kb on - strand, within AO353_25770at 5682.083 kb on + strand, within AO353_25770at 5682.083 kb on + strand, within AO353_25770at 5682.084 kb on - strand, within AO353_25770at 5682.084 kb on - strand, within AO353_25770at 5682.095 kb on + strand, within AO353_25770at 5682.095 kb on + strand, within AO353_25770at 5682.096 kb on - strand, within AO353_25770at 5682.096 kb on - strand, within AO353_25770at 5682.096 kb on - strand, within AO353_25770at 5682.124 kb on + strand, within AO353_25770at 5682.125 kb on - strand, within AO353_25770at 5682.125 kb on - strand, within AO353_25770at 5682.277 kb on + strand, within AO353_25775at 5682.277 kb on + strand, within AO353_25775at 5682.277 kb on + strand, within AO353_25775at 5682.278 kb on - strand, within AO353_25775at 5682.278 kb on - strand, within AO353_25775at 5682.278 kb on - strand, within AO353_25775at 5682.278 kb on - strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.281 kb on + strand, within AO353_25775at 5682.282 kb on - strand, within AO353_25775at 5682.282 kb on - strand, within AO353_25775at 5682.282 kb on - strand, within AO353_25775at 5682.282 kb on - strand, within AO353_25775at 5682.282 kb on - strand, within AO353_25775at 5682.282 kb on - strand, within AO353_25775at 5682.282 kb on - strand, within AO353_25775at 5682.286 kb on + strand, within AO353_25775at 5682.286 kb on + strand, within AO353_25775at 5682.286 kb on + strand, within AO353_25775at 5682.286 kb on + strand, within AO353_25775at 5682.286 kb on + strand, within AO353_25775at 5682.287 kb on - strand, within AO353_25775at 5682.312 kb on + strand, within AO353_25775at 5682.313 kb on - strand, within AO353_25775at 5682.493 kb on + strandat 5682.493 kb on + strand, within AO353_25775at 5682.493 kb on + strand, within AO353_25775at 5682.494 kb on - strand, within AO353_25775at 5682.494 kb on - strand, within AO353_25775at 5682.629 kb on + strand, within AO353_25775at 5682.630 kb on - strandat 5682.761 kb on + strandat 5682.783 kb on + strandat 5682.783 kb on + strandat 5682.783 kb on + strandat 5682.785 kb on + strandat 5682.785 kb on + strandat 5682.785 kb on + strandat 5682.785 kb on + strandat 5682.786 kb on - strandat 5682.786 kb on - strandat 5682.786 kb on - strandat 5682.786 kb on - strandat 5682.806 kb on + strandat 5682.806 kb on + strandat 5682.806 kb on + strandat 5682.806 kb on + strandat 5682.806 kb on + strandat 5682.807 kb on - strandat 5682.807 kb on - strandat 5682.817 kb on + strandat 5682.817 kb on + strandat 5682.817 kb on + strandat 5682.818 kb on - strandat 5682.818 kb on - strandat 5682.818 kb on - strandat 5682.818 kb on - strandat 5682.842 kb on + strandat 5682.842 kb on + strandat 5682.843 kb on - strandat 5682.860 kb on - strandat 5682.860 kb on - strandat 5682.860 kb on - strandat 5682.899 kb on + strandat 5682.908 kb on + strandat 5682.908 kb on + strandat 5682.909 kb on - strandat 5682.909 kb on - strandat 5682.909 kb on - strandat 5682.909 kb on - strandat 5682.909 kb on - strandat 5683.579 kb on - strand, within AO353_25785at 5683.697 kb on + strand, within AO353_25785at 5683.698 kb on - strand, within AO353_25785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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5,681,287 + AO353_25765 0.87 -2.3
5,681,288 - AO353_25765 0.88 -1.0
5,681,288 - AO353_25765 0.88 -0.5
5,681,288 - AO353_25765 0.88 +0.5
5,681,288 - AO353_25765 0.88 -1.9
5,681,489 + -2.4
5,681,532 + -1.1
5,681,532 + +1.6
5,681,533 - +1.1
5,681,582 + +1.0
5,681,582 + -1.1
5,681,583 - -0.8
5,681,729 + AO353_25770 0.19 +0.3
5,681,729 + AO353_25770 0.19 -1.2
5,681,729 + AO353_25770 0.19 -0.8
5,681,729 + AO353_25770 0.19 -1.1
5,681,730 - AO353_25770 0.19 -0.5
5,681,730 - AO353_25770 0.19 +0.3
5,681,730 - AO353_25770 0.19 +0.6
5,681,730 - AO353_25770 0.19 -0.6
5,681,730 - AO353_25770 0.19 -0.8
5,681,759 + AO353_25770 0.24 -2.5
5,681,759 + AO353_25770 0.24 -0.3
5,681,760 - AO353_25770 0.25 +1.8
5,681,786 + AO353_25770 0.29 +1.7
5,681,786 + AO353_25770 0.29 -0.2
5,681,804 + AO353_25770 0.32 +0.6
5,682,079 + AO353_25770 0.81 -0.9
5,682,080 - AO353_25770 0.81 -1.3
5,682,083 + AO353_25770 0.82 -1.1
5,682,083 + AO353_25770 0.82 +0.7
5,682,084 - AO353_25770 0.82 -0.4
5,682,084 - AO353_25770 0.82 -0.7
5,682,095 + AO353_25770 0.84 +1.8
5,682,095 + AO353_25770 0.84 -0.5
5,682,096 - AO353_25770 0.84 -0.1
5,682,096 - AO353_25770 0.84 -2.0
5,682,096 - AO353_25770 0.84 +2.1
5,682,124 + AO353_25770 0.89 +0.3
5,682,125 - AO353_25770 0.89 -0.9
5,682,125 - AO353_25770 0.89 +0.8
5,682,277 + AO353_25775 0.18 -2.0
5,682,277 + AO353_25775 0.18 +0.9
5,682,277 + AO353_25775 0.18 +1.1
5,682,278 - AO353_25775 0.18 +1.1
5,682,278 - AO353_25775 0.18 +2.1
5,682,278 - AO353_25775 0.18 +1.0
5,682,278 - AO353_25775 0.18 +0.9
5,682,281 + AO353_25775 0.19 -1.5
5,682,281 + AO353_25775 0.19 -0.1
5,682,281 + AO353_25775 0.19 +0.7
5,682,281 + AO353_25775 0.19 -0.5
5,682,281 + AO353_25775 0.19 -1.1
5,682,281 + AO353_25775 0.19 +0.1
5,682,281 + AO353_25775 0.19 +0.6
5,682,281 + AO353_25775 0.19 -0.9
5,682,282 - AO353_25775 0.19 -0.5
5,682,282 - AO353_25775 0.19 +0.1
5,682,282 - AO353_25775 0.19 +0.0
5,682,282 - AO353_25775 0.19 +0.0
5,682,282 - AO353_25775 0.19 -2.8
5,682,282 - AO353_25775 0.19 +0.6
5,682,282 - AO353_25775 0.19 -0.9
5,682,286 + AO353_25775 0.20 +0.9
5,682,286 + AO353_25775 0.20 -0.2
5,682,286 + AO353_25775 0.20 +0.6
5,682,286 + AO353_25775 0.20 -0.3
5,682,286 + AO353_25775 0.20 +0.7
5,682,287 - AO353_25775 0.20 -1.7
5,682,312 + AO353_25775 0.25 +0.4
5,682,313 - AO353_25775 0.25 -0.1
5,682,493 + +0.5
5,682,493 + AO353_25775 0.59 +1.7
5,682,493 + AO353_25775 0.59 -0.3
5,682,494 - AO353_25775 0.60 -2.2
5,682,494 - AO353_25775 0.60 +2.7
5,682,629 + AO353_25775 0.85 +1.2
5,682,630 - +1.5
5,682,761 + +0.7
5,682,783 + -0.5
5,682,783 + +0.8
5,682,783 + +1.3
5,682,785 + -1.5
5,682,785 + -1.1
5,682,785 + -0.9
5,682,785 + -0.7
5,682,786 - -1.5
5,682,786 - -1.3
5,682,786 - -1.7
5,682,786 - +2.1
5,682,806 + +2.1
5,682,806 + +0.2
5,682,806 + +0.4
5,682,806 + -1.3
5,682,806 + -2.0
5,682,807 - +1.2
5,682,807 - -1.9
5,682,817 + +0.9
5,682,817 + -0.1
5,682,817 + +0.3
5,682,818 - -1.8
5,682,818 - -0.3
5,682,818 - -0.1
5,682,818 - +0.8
5,682,842 + +1.1
5,682,842 + -0.1
5,682,843 - -0.7
5,682,860 - +1.1
5,682,860 - -0.7
5,682,860 - +0.1
5,682,899 + -1.3
5,682,908 + +1.0
5,682,908 + -0.9
5,682,909 - -0.8
5,682,909 - -1.3
5,682,909 - +2.0
5,682,909 - +0.0
5,682,909 - -1.8
5,683,579 - AO353_25785 0.18 -2.0
5,683,697 + AO353_25785 0.39 +1.2
5,683,698 - AO353_25785 0.39 -0.0

Or see this region's nucleotide sequence