Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24275 and AO353_24280 are separated by 156 nucleotides AO353_24280 and AO353_24285 are separated by 72 nucleotides AO353_24285 and AO353_24290 are separated by 299 nucleotides
AO353_24275: AO353_24275 - transcriptional regulator, at 5,341,191 to 5,341,556
_24275
AO353_24280: AO353_24280 - amino acid-binding protein, at 5,341,713 to 5,342,105
_24280
AO353_24285: AO353_24285 - hypothetical protein, at 5,342,178 to 5,343,065
_24285
AO353_24290: AO353_24290 - AraC family transcriptional regulator, at 5,343,365 to 5,344,204
_24290
Position (kb) 5342
5343
5344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5341.220 kb on - strand at 5341.220 kb on - strand at 5341.330 kb on - strand, within AO353_24275 at 5341.330 kb on - strand, within AO353_24275 at 5341.441 kb on - strand, within AO353_24275 at 5341.518 kb on + strand, within AO353_24275 at 5341.519 kb on - strand, within AO353_24275 at 5341.633 kb on - strand at 5341.743 kb on + strand at 5341.744 kb on - strand at 5341.744 kb on - strand at 5341.789 kb on + strand, within AO353_24280 at 5341.789 kb on + strand, within AO353_24280 at 5341.789 kb on + strand, within AO353_24280 at 5341.790 kb on - strand, within AO353_24280 at 5341.790 kb on - strand, within AO353_24280 at 5341.790 kb on - strand, within AO353_24280 at 5341.790 kb on - strand, within AO353_24280 at 5341.790 kb on - strand, within AO353_24280 at 5341.851 kb on + strand, within AO353_24280 at 5341.941 kb on + strand, within AO353_24280 at 5341.941 kb on + strand, within AO353_24280 at 5341.947 kb on + strand, within AO353_24280 at 5341.947 kb on + strand, within AO353_24280 at 5341.947 kb on + strand, within AO353_24280 at 5341.947 kb on + strand, within AO353_24280 at 5341.947 kb on + strand, within AO353_24280 at 5341.947 kb on + strand, within AO353_24280 at 5341.947 kb on + strand, within AO353_24280 at 5341.948 kb on - strand, within AO353_24280 at 5341.948 kb on - strand, within AO353_24280 at 5341.948 kb on - strand, within AO353_24280 at 5342.059 kb on + strand, within AO353_24280 at 5342.059 kb on + strand, within AO353_24280 at 5342.059 kb on + strand, within AO353_24280 at 5342.073 kb on + strand at 5342.073 kb on + strand at 5342.073 kb on + strand at 5342.073 kb on + strand at 5342.074 kb on - strand at 5342.134 kb on + strand at 5342.163 kb on - strand at 5342.164 kb on + strand at 5342.164 kb on + strand at 5342.164 kb on + strand at 5342.164 kb on + strand at 5342.165 kb on - strand at 5342.165 kb on - strand at 5342.180 kb on - strand at 5342.180 kb on - strand at 5342.180 kb on - strand at 5342.180 kb on - strand at 5342.180 kb on - strand at 5342.184 kb on - strand at 5342.184 kb on - strand at 5342.236 kb on - strand at 5342.256 kb on + strand at 5342.257 kb on - strand at 5342.257 kb on - strand at 5342.290 kb on - strand, within AO353_24285 at 5342.383 kb on + strand, within AO353_24285 at 5342.384 kb on - strand, within AO353_24285 at 5342.436 kb on + strand, within AO353_24285 at 5342.457 kb on + strand, within AO353_24285 at 5342.457 kb on + strand, within AO353_24285 at 5342.457 kb on + strand, within AO353_24285 at 5342.458 kb on - strand, within AO353_24285 at 5342.458 kb on - strand, within AO353_24285 at 5342.458 kb on - strand, within AO353_24285 at 5342.486 kb on + strand, within AO353_24285 at 5342.486 kb on + strand, within AO353_24285 at 5342.486 kb on + strand, within AO353_24285 at 5342.486 kb on + strand, within AO353_24285 at 5342.487 kb on - strand, within AO353_24285 at 5342.487 kb on - strand, within AO353_24285 at 5342.588 kb on + strand, within AO353_24285 at 5342.589 kb on - strand, within AO353_24285 at 5342.589 kb on - strand, within AO353_24285 at 5342.664 kb on + strand, within AO353_24285 at 5342.664 kb on + strand, within AO353_24285 at 5342.665 kb on - strand, within AO353_24285 at 5342.665 kb on - strand, within AO353_24285 at 5342.670 kb on + strand, within AO353_24285 at 5342.671 kb on - strand, within AO353_24285 at 5342.671 kb on - strand, within AO353_24285 at 5342.671 kb on - strand, within AO353_24285 at 5342.673 kb on + strand, within AO353_24285 at 5342.674 kb on - strand, within AO353_24285 at 5342.674 kb on - strand, within AO353_24285 at 5342.708 kb on - strand, within AO353_24285 at 5342.734 kb on - strand, within AO353_24285 at 5342.734 kb on - strand, within AO353_24285 at 5342.782 kb on + strand, within AO353_24285 at 5342.783 kb on - strand, within AO353_24285 at 5342.783 kb on - strand, within AO353_24285 at 5342.783 kb on - strand, within AO353_24285 at 5342.788 kb on + strand, within AO353_24285 at 5342.789 kb on - strand, within AO353_24285 at 5342.789 kb on - strand, within AO353_24285 at 5342.806 kb on + strand, within AO353_24285 at 5342.806 kb on + strand, within AO353_24285 at 5342.807 kb on - strand, within AO353_24285 at 5342.807 kb on - strand, within AO353_24285 at 5342.807 kb on - strand, within AO353_24285 at 5342.807 kb on - strand, within AO353_24285 at 5342.858 kb on + strand, within AO353_24285 at 5342.858 kb on + strand, within AO353_24285 at 5342.859 kb on - strand, within AO353_24285 at 5342.872 kb on - strand, within AO353_24285 at 5342.891 kb on + strand, within AO353_24285 at 5342.891 kb on + strand, within AO353_24285 at 5342.892 kb on - strand, within AO353_24285 at 5342.892 kb on - strand, within AO353_24285 at 5342.913 kb on + strand, within AO353_24285 at 5342.913 kb on + strand, within AO353_24285 at 5342.913 kb on + strand, within AO353_24285 at 5342.927 kb on + strand, within AO353_24285 at 5342.928 kb on - strand, within AO353_24285 at 5342.928 kb on - strand, within AO353_24285 at 5343.003 kb on - strand at 5343.015 kb on + strand at 5343.051 kb on + strand at 5343.051 kb on + strand at 5343.052 kb on - strand at 5343.052 kb on - strand at 5343.066 kb on + strand at 5343.067 kb on - strand at 5343.086 kb on + strand at 5343.086 kb on + strand at 5343.087 kb on - strand at 5343.088 kb on + strand at 5343.089 kb on - strand at 5343.097 kb on - strand at 5343.106 kb on + strand at 5343.107 kb on - strand at 5343.107 kb on - strand at 5343.107 kb on - strand at 5343.182 kb on + strand at 5343.182 kb on + strand at 5343.183 kb on - strand at 5343.184 kb on + strand at 5343.322 kb on + strand at 5343.322 kb on + strand at 5343.322 kb on + strand at 5343.323 kb on - strand at 5343.419 kb on - strand at 5343.473 kb on + strand, within AO353_24290 at 5343.473 kb on + strand, within AO353_24290 at 5343.473 kb on + strand, within AO353_24290 at 5343.474 kb on - strand, within AO353_24290 at 5343.474 kb on - strand, within AO353_24290 at 5343.474 kb on - strand, within AO353_24290 at 5343.482 kb on + strand, within AO353_24290 at 5343.482 kb on + strand, within AO353_24290 at 5343.506 kb on + strand, within AO353_24290 at 5343.507 kb on - strand, within AO353_24290 at 5343.507 kb on - strand, within AO353_24290 at 5343.551 kb on + strand, within AO353_24290 at 5343.551 kb on + strand, within AO353_24290 at 5343.551 kb on + strand, within AO353_24290 at 5343.552 kb on - strand, within AO353_24290 at 5343.578 kb on - strand, within AO353_24290 at 5343.587 kb on - strand, within AO353_24290 at 5343.587 kb on - strand, within AO353_24290 at 5343.656 kb on + strand, within AO353_24290 at 5343.656 kb on + strand, within AO353_24290 at 5343.796 kb on + strand, within AO353_24290 at 5343.859 kb on + strand, within AO353_24290 at 5343.859 kb on + strand, within AO353_24290 at 5343.891 kb on + strand, within AO353_24290 at 5343.891 kb on + strand, within AO353_24290 at 5343.892 kb on - strand, within AO353_24290 at 5343.892 kb on - strand, within AO353_24290 at 5343.892 kb on - strand, within AO353_24290 at 5343.892 kb on - strand, within AO353_24290 at 5343.893 kb on + strand, within AO353_24290 at 5343.893 kb on + strand, within AO353_24290 at 5343.894 kb on - strand, within AO353_24290 at 5343.894 kb on - strand, within AO353_24290 at 5343.894 kb on - strand, within AO353_24290 at 5343.936 kb on + strand, within AO353_24290 at 5343.989 kb on + strand, within AO353_24290 at 5343.990 kb on - strand, within AO353_24290 at 5344.020 kb on + strand, within AO353_24290 at 5344.020 kb on + strand, within AO353_24290 at 5344.020 kb on + strand, within AO353_24290 at 5344.020 kb on + strand, within AO353_24290 at 5344.021 kb on - strand, within AO353_24290 at 5344.021 kb on - strand, within AO353_24290 at 5344.021 kb on - strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290 at 5344.065 kb on + strand, within AO353_24290
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 5,341,220 - -0.6 5,341,220 - -1.2 5,341,330 - AO353_24275 0.38 -1.5 5,341,330 - AO353_24275 0.38 -0.8 5,341,441 - AO353_24275 0.68 +1.3 5,341,518 + AO353_24275 0.89 +1.8 5,341,519 - AO353_24275 0.90 -2.9 5,341,633 - +0.9 5,341,743 + -1.1 5,341,744 - +2.2 5,341,744 - -0.1 5,341,789 + AO353_24280 0.19 +0.4 5,341,789 + AO353_24280 0.19 +1.3 5,341,789 + AO353_24280 0.19 -0.3 5,341,790 - AO353_24280 0.20 +1.9 5,341,790 - AO353_24280 0.20 -1.8 5,341,790 - AO353_24280 0.20 -0.5 5,341,790 - AO353_24280 0.20 +0.5 5,341,790 - AO353_24280 0.20 +2.9 5,341,851 + AO353_24280 0.35 -0.1 5,341,941 + AO353_24280 0.58 +0.5 5,341,941 + AO353_24280 0.58 -2.8 5,341,947 + AO353_24280 0.60 +1.0 5,341,947 + AO353_24280 0.60 +0.7 5,341,947 + AO353_24280 0.60 -2.8 5,341,947 + AO353_24280 0.60 +1.3 5,341,947 + AO353_24280 0.60 +0.6 5,341,947 + AO353_24280 0.60 -2.2 5,341,947 + AO353_24280 0.60 +2.2 5,341,948 - AO353_24280 0.60 +2.5 5,341,948 - AO353_24280 0.60 -0.1 5,341,948 - AO353_24280 0.60 -1.1 5,342,059 + AO353_24280 0.88 +0.1 5,342,059 + AO353_24280 0.88 +0.5 5,342,059 + AO353_24280 0.88 +1.5 5,342,073 + +1.5 5,342,073 + -0.1 5,342,073 + -1.6 5,342,073 + +0.2 5,342,074 - -0.1 5,342,134 + -1.1 5,342,163 - -0.5 5,342,164 + -1.5 5,342,164 + -1.3 5,342,164 + -2.1 5,342,164 + +0.9 5,342,165 - -0.8 5,342,165 - -1.1 5,342,180 - +1.0 5,342,180 - -0.6 5,342,180 - -2.5 5,342,180 - +0.1 5,342,180 - -1.1 5,342,184 - -2.0 5,342,184 - -0.8 5,342,236 - +2.1 5,342,256 + -2.3 5,342,257 - -0.7 5,342,257 - -2.4 5,342,290 - AO353_24285 0.13 +0.1 5,342,383 + AO353_24285 0.23 -1.0 5,342,384 - AO353_24285 0.23 -0.1 5,342,436 + AO353_24285 0.29 -0.7 5,342,457 + AO353_24285 0.31 -2.3 5,342,457 + AO353_24285 0.31 +1.0 5,342,457 + AO353_24285 0.31 -0.6 5,342,458 - AO353_24285 0.32 -0.1 5,342,458 - AO353_24285 0.32 -1.9 5,342,458 - AO353_24285 0.32 +1.0 5,342,486 + AO353_24285 0.35 -0.0 5,342,486 + AO353_24285 0.35 -1.3 5,342,486 + AO353_24285 0.35 -1.1 5,342,486 + AO353_24285 0.35 +1.5 5,342,487 - AO353_24285 0.35 -0.6 5,342,487 - AO353_24285 0.35 -1.2 5,342,588 + AO353_24285 0.46 +0.6 5,342,589 - AO353_24285 0.46 -2.1 5,342,589 - AO353_24285 0.46 +0.5 5,342,664 + AO353_24285 0.55 -0.8 5,342,664 + AO353_24285 0.55 +1.3 5,342,665 - AO353_24285 0.55 -2.2 5,342,665 - AO353_24285 0.55 -1.8 5,342,670 + AO353_24285 0.55 +0.1 5,342,671 - AO353_24285 0.56 +0.4 5,342,671 - AO353_24285 0.56 +1.8 5,342,671 - AO353_24285 0.56 -0.0 5,342,673 + AO353_24285 0.56 +0.9 5,342,674 - AO353_24285 0.56 -1.7 5,342,674 - AO353_24285 0.56 -0.7 5,342,708 - AO353_24285 0.60 +1.6 5,342,734 - AO353_24285 0.63 +0.1 5,342,734 - AO353_24285 0.63 +1.5 5,342,782 + AO353_24285 0.68 +0.3 5,342,783 - AO353_24285 0.68 -0.8 5,342,783 - AO353_24285 0.68 +0.1 5,342,783 - AO353_24285 0.68 +0.3 5,342,788 + AO353_24285 0.69 -0.2 5,342,789 - AO353_24285 0.69 -2.1 5,342,789 - AO353_24285 0.69 +1.3 5,342,806 + AO353_24285 0.71 -0.2 5,342,806 + AO353_24285 0.71 +1.9 5,342,807 - AO353_24285 0.71 +1.8 5,342,807 - AO353_24285 0.71 -0.2 5,342,807 - AO353_24285 0.71 -1.3 5,342,807 - AO353_24285 0.71 -0.9 5,342,858 + AO353_24285 0.77 +0.5 5,342,858 + AO353_24285 0.77 -1.3 5,342,859 - AO353_24285 0.77 -2.6 5,342,872 - AO353_24285 0.78 -2.0 5,342,891 + AO353_24285 0.80 -2.4 5,342,891 + AO353_24285 0.80 +1.3 5,342,892 - AO353_24285 0.80 -0.1 5,342,892 - AO353_24285 0.80 -0.1 5,342,913 + AO353_24285 0.83 +0.5 5,342,913 + AO353_24285 0.83 +1.5 5,342,913 + AO353_24285 0.83 +0.8 5,342,927 + AO353_24285 0.84 -2.3 5,342,928 - AO353_24285 0.84 +1.2 5,342,928 - AO353_24285 0.84 -1.7 5,343,003 - -0.9 5,343,015 + -1.7 5,343,051 + -0.0 5,343,051 + +1.3 5,343,052 - -1.3 5,343,052 - -1.5 5,343,066 + +1.2 5,343,067 - +0.4 5,343,086 + -0.9 5,343,086 + -2.6 5,343,087 - -0.1 5,343,088 + -1.8 5,343,089 - +1.3 5,343,097 - -0.8 5,343,106 + -0.2 5,343,107 - -0.8 5,343,107 - +1.9 5,343,107 - +1.1 5,343,182 + -1.3 5,343,182 + -0.1 5,343,183 - -0.1 5,343,184 + -3.3 5,343,322 + +0.5 5,343,322 + -2.3 5,343,322 + -1.7 5,343,323 - -2.4 5,343,419 - +1.1 5,343,473 + AO353_24290 0.13 -0.5 5,343,473 + AO353_24290 0.13 +0.5 5,343,473 + AO353_24290 0.13 -1.1 5,343,474 - AO353_24290 0.13 +0.3 5,343,474 - AO353_24290 0.13 -0.7 5,343,474 - AO353_24290 0.13 +0.3 5,343,482 + AO353_24290 0.14 +1.3 5,343,482 + AO353_24290 0.14 +0.2 5,343,506 + AO353_24290 0.17 +1.3 5,343,507 - AO353_24290 0.17 -0.5 5,343,507 - AO353_24290 0.17 +0.7 5,343,551 + AO353_24290 0.22 -2.0 5,343,551 + AO353_24290 0.22 -2.1 5,343,551 + AO353_24290 0.22 -1.8 5,343,552 - AO353_24290 0.22 +0.4 5,343,578 - AO353_24290 0.25 +0.8 5,343,587 - AO353_24290 0.26 -2.3 5,343,587 - AO353_24290 0.26 -3.2 5,343,656 + AO353_24290 0.35 -0.2 5,343,656 + AO353_24290 0.35 -2.5 5,343,796 + AO353_24290 0.51 +0.7 5,343,859 + AO353_24290 0.59 -0.5 5,343,859 + AO353_24290 0.59 -0.1 5,343,891 + AO353_24290 0.63 -1.3 5,343,891 + AO353_24290 0.63 -1.8 5,343,892 - AO353_24290 0.63 -1.1 5,343,892 - AO353_24290 0.63 +0.4 5,343,892 - AO353_24290 0.63 -0.4 5,343,892 - AO353_24290 0.63 +0.9 5,343,893 + AO353_24290 0.63 -2.2 5,343,893 + AO353_24290 0.63 +0.8 5,343,894 - AO353_24290 0.63 -0.1 5,343,894 - AO353_24290 0.63 -0.5 5,343,894 - AO353_24290 0.63 +0.5 5,343,936 + AO353_24290 0.68 +0.5 5,343,989 + AO353_24290 0.74 +0.9 5,343,990 - AO353_24290 0.74 +0.2 5,344,020 + AO353_24290 0.78 +2.2 5,344,020 + AO353_24290 0.78 +0.2 5,344,020 + AO353_24290 0.78 +0.6 5,344,020 + AO353_24290 0.78 +2.5 5,344,021 - AO353_24290 0.78 -1.8 5,344,021 - AO353_24290 0.78 +2.3 5,344,021 - AO353_24290 0.78 -0.8 5,344,065 + AO353_24290 0.83 -1.1 5,344,065 + AO353_24290 0.83 -2.1 5,344,065 + AO353_24290 0.83 -0.8 5,344,065 + AO353_24290 0.83 -1.1 5,344,065 + AO353_24290 0.83 -1.1 5,344,065 + AO353_24290 0.83 -0.7 5,344,065 + AO353_24290 0.83 +1.1 5,344,065 + AO353_24290 0.83 -0.5 5,344,065 + AO353_24290 0.83 -0.2 5,344,065 + AO353_24290 0.83 +1.0 5,344,065 + AO353_24290 0.83 +0.4 5,344,065 + AO353_24290 0.83 -0.1 5,344,065 + AO353_24290 0.83 -0.4 5,344,065 + AO353_24290 0.83 -1.5 5,344,065 + AO353_24290 0.83 -1.3
Or see this region's nucleotide sequence