Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23730

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23720 and AO353_23725 overlap by 8 nucleotidesAO353_23725 and AO353_23730 overlap by 4 nucleotidesAO353_23730 and AO353_23735 are separated by 5 nucleotides AO353_23720: AO353_23720 - BatB protein, at 5,200,072 to 5,201,148 _23720 AO353_23725: AO353_23725 - hypothetical protein, at 5,201,141 to 5,201,635 _23725 AO353_23730: AO353_23730 - hypothetical protein, at 5,201,632 to 5,202,576 _23730 AO353_23735: AO353_23735 - AAA family ATPase, at 5,202,582 to 5,203,541 _23735 Position (kb) 5201 5202 5203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5200.671 kb on + strand, within AO353_23720at 5200.672 kb on - strand, within AO353_23720at 5200.712 kb on + strand, within AO353_23720at 5200.712 kb on + strand, within AO353_23720at 5200.713 kb on - strand, within AO353_23720at 5200.713 kb on - strand, within AO353_23720at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.223 kb on + strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.224 kb on - strand, within AO353_23725at 5201.299 kb on + strandat 5201.329 kb on - strand, within AO353_23725at 5201.406 kb on + strand, within AO353_23725at 5201.482 kb on + strand, within AO353_23725at 5201.483 kb on - strand, within AO353_23725at 5201.501 kb on - strand, within AO353_23725at 5201.501 kb on - strand, within AO353_23725at 5201.552 kb on + strand, within AO353_23725at 5201.666 kb on + strandat 5201.666 kb on + strandat 5201.666 kb on + strandat 5201.667 kb on - strandat 5201.700 kb on + strandat 5202.159 kb on - strand, within AO353_23730at 5202.159 kb on - strand, within AO353_23730at 5202.159 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.396 kb on - strand, within AO353_23730at 5202.868 kb on + strand, within AO353_23735at 5202.869 kb on - strand, within AO353_23735at 5202.869 kb on - strand, within AO353_23735at 5202.892 kb on + strand, within AO353_23735at 5202.892 kb on + strand, within AO353_23735at 5202.893 kb on - strand, within AO353_23735at 5202.893 kb on - strand, within AO353_23735at 5202.893 kb on - strand, within AO353_23735at 5202.925 kb on - strand, within AO353_23735at 5202.925 kb on - strand, within AO353_23735at 5203.078 kb on + strand, within AO353_23735at 5203.078 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.141 kb on + strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.142 kb on - strand, within AO353_23735at 5203.145 kb on + strand, within AO353_23735at 5203.145 kb on + strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735at 5203.146 kb on - strand, within AO353_23735

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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5,200,671 + AO353_23720 0.56 -2.5
5,200,672 - AO353_23720 0.56 -1.3
5,200,712 + AO353_23720 0.59 +0.2
5,200,712 + AO353_23720 0.59 +0.5
5,200,713 - AO353_23720 0.60 -1.8
5,200,713 - AO353_23720 0.60 -0.0
5,201,223 + AO353_23725 0.17 -0.3
5,201,223 + AO353_23725 0.17 -2.0
5,201,223 + AO353_23725 0.17 -1.8
5,201,223 + AO353_23725 0.17 +0.8
5,201,223 + AO353_23725 0.17 -0.6
5,201,224 - AO353_23725 0.17 -1.6
5,201,224 - AO353_23725 0.17 +0.3
5,201,224 - AO353_23725 0.17 -1.7
5,201,224 - AO353_23725 0.17 -1.5
5,201,224 - AO353_23725 0.17 -2.0
5,201,224 - AO353_23725 0.17 +0.2
5,201,299 + +0.2
5,201,329 - AO353_23725 0.38 +0.4
5,201,406 + AO353_23725 0.54 +1.4
5,201,482 + AO353_23725 0.69 +0.5
5,201,483 - AO353_23725 0.69 -0.6
5,201,501 - AO353_23725 0.73 +0.2
5,201,501 - AO353_23725 0.73 +1.2
5,201,552 + AO353_23725 0.83 +1.3
5,201,666 + -1.5
5,201,666 + +0.8
5,201,666 + -0.2
5,201,667 - +1.4
5,201,700 + +0.7
5,202,159 - AO353_23730 0.56 -0.3
5,202,159 - AO353_23730 0.56 +1.5
5,202,159 - AO353_23730 0.56 +1.1
5,202,396 - AO353_23730 0.81 +1.9
5,202,396 - AO353_23730 0.81 +0.5
5,202,396 - AO353_23730 0.81 +1.5
5,202,396 - AO353_23730 0.81 -0.1
5,202,868 + AO353_23735 0.30 -0.5
5,202,869 - AO353_23735 0.30 +0.5
5,202,869 - AO353_23735 0.30 -1.5
5,202,892 + AO353_23735 0.32 +0.3
5,202,892 + AO353_23735 0.32 +1.3
5,202,893 - AO353_23735 0.32 -1.1
5,202,893 - AO353_23735 0.32 +1.7
5,202,893 - AO353_23735 0.32 +0.1
5,202,925 - AO353_23735 0.36 +2.6
5,202,925 - AO353_23735 0.36 +0.2
5,203,078 + AO353_23735 0.52 -0.8
5,203,078 + AO353_23735 0.52 -1.4
5,203,141 + AO353_23735 0.58 -2.0
5,203,141 + AO353_23735 0.58 -0.6
5,203,141 + AO353_23735 0.58 +1.9
5,203,141 + AO353_23735 0.58 +0.1
5,203,141 + AO353_23735 0.58 +1.9
5,203,141 + AO353_23735 0.58 -1.3
5,203,141 + AO353_23735 0.58 +0.9
5,203,141 + AO353_23735 0.58 +1.5
5,203,142 - AO353_23735 0.58 -0.5
5,203,142 - AO353_23735 0.58 -1.7
5,203,142 - AO353_23735 0.58 -0.3
5,203,142 - AO353_23735 0.58 -0.8
5,203,142 - AO353_23735 0.58 -0.6
5,203,142 - AO353_23735 0.58 -0.8
5,203,142 - AO353_23735 0.58 -1.7
5,203,142 - AO353_23735 0.58 +1.1
5,203,142 - AO353_23735 0.58 -3.0
5,203,142 - AO353_23735 0.58 +0.8
5,203,145 + AO353_23735 0.59 +1.2
5,203,145 + AO353_23735 0.59 -0.8
5,203,146 - AO353_23735 0.59 +3.1
5,203,146 - AO353_23735 0.59 -3.6
5,203,146 - AO353_23735 0.59 -0.6
5,203,146 - AO353_23735 0.59 -1.7

Or see this region's nucleotide sequence