Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23600 and AO353_23605 are separated by 101 nucleotides AO353_23605 and AO353_23610 overlap by 1 nucleotides AO353_23610 and AO353_23615 overlap by 4 nucleotides
AO353_23600: AO353_23600 - cobalt chelatase, at 5,167,132 to 5,168,082
_23600
AO353_23605: AO353_23605 - NAD kinase, at 5,168,184 to 5,169,074
_23605
AO353_23610: AO353_23610 - serine/threonine protein phosphatase, at 5,169,074 to 5,170,045
_23610
AO353_23615: AO353_23615 - peptidase S54, at 5,170,042 to 5,170,917
_23615
Position (kb) 5168
5169
5170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5167.226 kb on - strand at 5167.226 kb on - strand at 5167.226 kb on - strand at 5167.310 kb on + strand, within AO353_23600 at 5167.311 kb on - strand, within AO353_23600 at 5167.469 kb on + strand, within AO353_23600 at 5167.470 kb on - strand at 5167.670 kb on + strand, within AO353_23600 at 5167.670 kb on + strand, within AO353_23600 at 5167.671 kb on - strand, within AO353_23600 at 5167.832 kb on + strand, within AO353_23600 at 5167.832 kb on + strand, within AO353_23600 at 5167.833 kb on - strand, within AO353_23600 at 5167.936 kb on + strand, within AO353_23600 at 5168.053 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.074 kb on + strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.075 kb on - strand at 5168.167 kb on + strand at 5168.167 kb on + strand at 5169.091 kb on + strand at 5169.092 kb on - strand at 5169.092 kb on - strand at 5169.095 kb on + strand at 5169.095 kb on + strand at 5169.095 kb on + strand at 5169.095 kb on + strand at 5169.368 kb on + strand, within AO353_23610 at 5169.368 kb on + strand, within AO353_23610 at 5169.368 kb on + strand, within AO353_23610 at 5169.368 kb on + strand, within AO353_23610 at 5169.369 kb on - strand, within AO353_23610 at 5169.369 kb on - strand, within AO353_23610 at 5169.369 kb on - strand, within AO353_23610 at 5169.369 kb on - strand, within AO353_23610 at 5169.369 kb on - strand, within AO353_23610 at 5169.470 kb on + strand, within AO353_23610 at 5169.470 kb on + strand, within AO353_23610 at 5169.471 kb on - strand, within AO353_23610 at 5169.560 kb on + strand, within AO353_23610 at 5169.560 kb on + strand, within AO353_23610 at 5169.561 kb on - strand, within AO353_23610 at 5169.561 kb on - strand, within AO353_23610 at 5169.561 kb on - strand, within AO353_23610 at 5169.752 kb on + strand at 5169.752 kb on + strand, within AO353_23610 at 5169.752 kb on + strand, within AO353_23610 at 5169.753 kb on - strand, within AO353_23610 at 5169.753 kb on - strand at 5169.829 kb on + strand, within AO353_23610 at 5169.829 kb on + strand, within AO353_23610 at 5169.843 kb on - strand, within AO353_23610 at 5169.878 kb on + strand, within AO353_23610 at 5169.878 kb on + strand, within AO353_23610 at 5169.932 kb on + strand, within AO353_23610 at 5169.932 kb on + strand, within AO353_23610 at 5169.932 kb on + strand, within AO353_23610 at 5169.947 kb on + strand, within AO353_23610 at 5170.061 kb on + strand at 5170.061 kb on + strand at 5170.061 kb on + strand at 5170.062 kb on - strand at 5170.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 5,167,226 - +0.1 5,167,226 - +0.5 5,167,226 - -0.2 5,167,310 + AO353_23600 0.19 -1.1 5,167,311 - AO353_23600 0.19 +0.2 5,167,469 + AO353_23600 0.35 -0.3 5,167,470 - +0.9 5,167,670 + AO353_23600 0.57 +0.1 5,167,670 + AO353_23600 0.57 +2.5 5,167,671 - AO353_23600 0.57 +0.1 5,167,832 + AO353_23600 0.74 +2.2 5,167,832 + AO353_23600 0.74 -0.3 5,167,833 - AO353_23600 0.74 -0.6 5,167,936 + AO353_23600 0.85 -0.8 5,168,053 + +0.1 5,168,074 + +0.5 5,168,074 + +0.0 5,168,074 + -0.1 5,168,074 + -0.4 5,168,074 + +1.1 5,168,075 - +1.5 5,168,075 - +0.4 5,168,075 - +1.2 5,168,075 - -1.6 5,168,075 - +0.2 5,168,075 - -3.6 5,168,075 - -0.1 5,168,167 + -0.1 5,168,167 + +2.4 5,169,091 + -1.0 5,169,092 - -2.3 5,169,092 - +1.4 5,169,095 + -0.3 5,169,095 + +0.4 5,169,095 + +0.3 5,169,095 + -0.5 5,169,368 + AO353_23610 0.30 +4.2 5,169,368 + AO353_23610 0.30 -1.7 5,169,368 + AO353_23610 0.30 -0.2 5,169,368 + AO353_23610 0.30 -2.1 5,169,369 - AO353_23610 0.30 -1.5 5,169,369 - AO353_23610 0.30 -0.1 5,169,369 - AO353_23610 0.30 -2.2 5,169,369 - AO353_23610 0.30 +0.5 5,169,369 - AO353_23610 0.30 -2.5 5,169,470 + AO353_23610 0.41 -2.7 5,169,470 + AO353_23610 0.41 +1.5 5,169,471 - AO353_23610 0.41 -1.9 5,169,560 + AO353_23610 0.50 -2.2 5,169,560 + AO353_23610 0.50 -2.2 5,169,561 - AO353_23610 0.50 -1.6 5,169,561 - AO353_23610 0.50 -1.9 5,169,561 - AO353_23610 0.50 -0.1 5,169,752 + -0.1 5,169,752 + AO353_23610 0.70 +2.1 5,169,752 + AO353_23610 0.70 -1.6 5,169,753 - AO353_23610 0.70 +1.2 5,169,753 - -1.3 5,169,829 + AO353_23610 0.78 -1.6 5,169,829 + AO353_23610 0.78 +1.0 5,169,843 - AO353_23610 0.79 +1.2 5,169,878 + AO353_23610 0.83 +0.1 5,169,878 + AO353_23610 0.83 +1.2 5,169,932 + AO353_23610 0.88 +0.1 5,169,932 + AO353_23610 0.88 -0.9 5,169,932 + AO353_23610 0.88 -0.1 5,169,947 + AO353_23610 0.90 -0.5 5,170,061 + -1.6 5,170,061 + -1.3 5,170,061 + +1.9 5,170,062 - +0.5 5,170,062 - -0.7
Or see this region's nucleotide sequence