Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20515 and AO353_20520 are separated by 1 nucleotides AO353_20520 and AO353_20525 are separated by 111 nucleotides AO353_20525 and AO353_20530 are separated by 253 nucleotides AO353_20530 and AO353_20535 are separated by 6 nucleotides
AO353_20515: AO353_20515 - nicotinate phosphoribosyltransferase, at 4,503,298 to 4,504,527
_20515
AO353_20520: AO353_20520 - NAD synthetase, at 4,504,529 to 4,505,359
_20520
AO353_20525: AO353_20525 - tRNA-Asn, at 4,505,471 to 4,505,546
_20525
AO353_20530: AO353_20530 - hypothetical protein, at 4,505,800 to 4,506,033
_20530
AO353_20535: AO353_20535 - hypothetical protein, at 4,506,040 to 4,506,249
_20535
Position (kb)
4504
4505
4506 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4503.534 kb on + strand, within AO353_20515 at 4503.535 kb on - strand, within AO353_20515 at 4503.535 kb on - strand, within AO353_20515 at 4503.535 kb on - strand, within AO353_20515 at 4503.550 kb on + strand, within AO353_20515 at 4503.550 kb on + strand, within AO353_20515 at 4503.550 kb on + strand, within AO353_20515 at 4503.551 kb on - strand, within AO353_20515 at 4503.551 kb on - strand, within AO353_20515 at 4503.551 kb on - strand, within AO353_20515 at 4503.551 kb on - strand, within AO353_20515 at 4503.604 kb on + strand, within AO353_20515 at 4503.605 kb on - strand, within AO353_20515 at 4503.605 kb on - strand, within AO353_20515 at 4503.727 kb on + strand, within AO353_20515 at 4503.727 kb on + strand, within AO353_20515 at 4503.728 kb on - strand, within AO353_20515 at 4503.766 kb on + strand, within AO353_20515 at 4503.766 kb on + strand, within AO353_20515 at 4503.944 kb on - strand, within AO353_20515 at 4504.060 kb on + strand, within AO353_20515 at 4504.060 kb on + strand, within AO353_20515 at 4504.061 kb on - strand, within AO353_20515 at 4504.132 kb on + strand, within AO353_20515 at 4504.132 kb on + strand, within AO353_20515 at 4504.132 kb on + strand, within AO353_20515 at 4504.132 kb on + strand, within AO353_20515 at 4504.133 kb on - strand, within AO353_20515 at 4504.133 kb on - strand, within AO353_20515 at 4504.147 kb on + strand, within AO353_20515 at 4504.147 kb on + strand, within AO353_20515 at 4504.148 kb on - strand, within AO353_20515 at 4504.148 kb on - strand, within AO353_20515 at 4504.148 kb on - strand, within AO353_20515 at 4504.210 kb on + strand, within AO353_20515 at 4504.210 kb on + strand, within AO353_20515 at 4504.211 kb on - strand, within AO353_20515 at 4504.474 kb on + strand at 4504.487 kb on + strand at 4504.487 kb on + strand at 4504.487 kb on + strand at 4504.488 kb on - strand at 4504.488 kb on - strand at 4504.528 kb on + strand at 4504.529 kb on - strand at 4504.529 kb on - strand at 4504.534 kb on + strand at 4504.534 kb on + strand at 4504.534 kb on + strand at 4504.534 kb on + strand at 4504.535 kb on - strand at 4504.535 kb on - strand at 4504.535 kb on - strand at 4504.535 kb on - strand at 4504.535 kb on - strand at 4504.787 kb on + strand, within AO353_20520 at 4504.787 kb on + strand, within AO353_20520 at 4504.985 kb on + strand, within AO353_20520 at 4504.985 kb on + strand, within AO353_20520 at 4504.985 kb on + strand, within AO353_20520 at 4504.985 kb on + strand, within AO353_20520 at 4504.985 kb on + strand, within AO353_20520 at 4504.986 kb on - strand, within AO353_20520 at 4505.225 kb on + strand, within AO353_20520 at 4505.225 kb on + strand, within AO353_20520 at 4505.225 kb on + strand, within AO353_20520 at 4505.225 kb on + strand, within AO353_20520 at 4505.225 kb on + strand, within AO353_20520 at 4505.226 kb on - strand, within AO353_20520 at 4505.226 kb on - strand, within AO353_20520 at 4505.238 kb on - strand, within AO353_20520 at 4505.256 kb on - strand, within AO353_20520 at 4505.256 kb on - strand, within AO353_20520 at 4505.256 kb on - strand, within AO353_20520 at 4505.309 kb on + strand at 4505.309 kb on + strand at 4505.309 kb on + strand at 4505.309 kb on + strand at 4505.310 kb on - strand at 4505.310 kb on - strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.357 kb on + strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.358 kb on - strand at 4505.555 kb on + strand at 4505.556 kb on - strand at 4505.688 kb on + strand at 4505.689 kb on - strand at 4505.689 kb on - strand at 4505.689 kb on - strand at 4505.743 kb on - strand at 4505.743 kb on - strand at 4505.743 kb on - strand at 4505.799 kb on + strand at 4505.799 kb on + strand at 4505.799 kb on + strand at 4505.799 kb on + strand at 4505.800 kb on - strand at 4505.800 kb on - strand at 4505.980 kb on + strand, within AO353_20530 at 4505.980 kb on + strand, within AO353_20530 at 4505.980 kb on + strand, within AO353_20530 at 4505.980 kb on + strand, within AO353_20530 at 4505.980 kb on + strand, within AO353_20530 at 4505.980 kb on + strand, within AO353_20530 at 4505.980 kb on + strand, within AO353_20530 at 4505.980 kb on + strand, within AO353_20530 at 4505.981 kb on - strand, within AO353_20530 at 4505.981 kb on - strand, within AO353_20530 at 4505.981 kb on - strand, within AO353_20530 at 4505.981 kb on - strand, within AO353_20530 at 4505.981 kb on - strand, within AO353_20530 at 4505.981 kb on - strand, within AO353_20530 at 4505.989 kb on + strand, within AO353_20530 at 4505.990 kb on - strand, within AO353_20530 at 4505.990 kb on - strand, within AO353_20530 at 4506.081 kb on - strand, within AO353_20535 at 4506.081 kb on - strand, within AO353_20535 at 4506.133 kb on + strand, within AO353_20535 at 4506.133 kb on + strand, within AO353_20535 at 4506.133 kb on + strand, within AO353_20535 at 4506.134 kb on - strand, within AO353_20535 at 4506.134 kb on - strand, within AO353_20535 at 4506.134 kb on - strand, within AO353_20535 at 4506.232 kb on + strand at 4506.232 kb on + strand at 4506.233 kb on - strand at 4506.233 kb on - strand at 4506.233 kb on - strand at 4506.233 kb on - strand at 4506.249 kb on + strand at 4506.249 kb on + strand at 4506.249 kb on + strand at 4506.249 kb on + strand at 4506.262 kb on + strand at 4506.263 kb on - strand at 4506.263 kb on - strand at 4506.263 kb on - strand at 4506.289 kb on + strand at 4506.289 kb on + strand at 4506.289 kb on + strand at 4506.290 kb on - strand at 4506.290 kb on - strand at 4506.290 kb on - strand at 4506.302 kb on - strand at 4506.302 kb on - strand at 4506.302 kb on - strand at 4506.359 kb on + strand at 4506.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 4,503,534 + AO353_20515 0.19 +0.8 4,503,535 - AO353_20515 0.19 +1.4 4,503,535 - AO353_20515 0.19 +0.7 4,503,535 - AO353_20515 0.19 -0.6 4,503,550 + AO353_20515 0.20 +2.4 4,503,550 + AO353_20515 0.20 -0.3 4,503,550 + AO353_20515 0.20 -1.9 4,503,551 - AO353_20515 0.21 +1.7 4,503,551 - AO353_20515 0.21 +0.1 4,503,551 - AO353_20515 0.21 +0.1 4,503,551 - AO353_20515 0.21 -0.3 4,503,604 + AO353_20515 0.25 -0.4 4,503,605 - AO353_20515 0.25 +1.6 4,503,605 - AO353_20515 0.25 +1.6 4,503,727 + AO353_20515 0.35 -1.4 4,503,727 + AO353_20515 0.35 -2.4 4,503,728 - AO353_20515 0.35 +1.1 4,503,766 + AO353_20515 0.38 -0.3 4,503,766 + AO353_20515 0.38 -1.4 4,503,944 - AO353_20515 0.53 +1.0 4,504,060 + AO353_20515 0.62 +0.2 4,504,060 + AO353_20515 0.62 +0.7 4,504,061 - AO353_20515 0.62 +0.7 4,504,132 + AO353_20515 0.68 +1.0 4,504,132 + AO353_20515 0.68 +1.1 4,504,132 + AO353_20515 0.68 -1.8 4,504,132 + AO353_20515 0.68 +0.1 4,504,133 - AO353_20515 0.68 -1.0 4,504,133 - AO353_20515 0.68 +1.4 4,504,147 + AO353_20515 0.69 +1.0 4,504,147 + AO353_20515 0.69 +0.9 4,504,148 - AO353_20515 0.69 +2.7 4,504,148 - AO353_20515 0.69 +3.0 4,504,148 - AO353_20515 0.69 -2.3 4,504,210 + AO353_20515 0.74 +1.2 4,504,210 + AO353_20515 0.74 +1.6 4,504,211 - AO353_20515 0.74 -0.4 4,504,474 + -1.3 4,504,487 + -0.7 4,504,487 + -0.8 4,504,487 + +0.4 4,504,488 - -0.0 4,504,488 - -0.9 4,504,528 + -1.6 4,504,529 - -1.0 4,504,529 - -0.8 4,504,534 + -1.3 4,504,534 + -0.0 4,504,534 + -1.0 4,504,534 + -0.3 4,504,535 - +1.8 4,504,535 - -0.5 4,504,535 - +1.2 4,504,535 - +1.8 4,504,535 - +0.3 4,504,787 + AO353_20520 0.31 +1.5 4,504,787 + AO353_20520 0.31 -1.3 4,504,985 + AO353_20520 0.55 -0.1 4,504,985 + AO353_20520 0.55 -1.8 4,504,985 + AO353_20520 0.55 -2.0 4,504,985 + AO353_20520 0.55 +1.4 4,504,985 + AO353_20520 0.55 -1.6 4,504,986 - AO353_20520 0.55 -2.4 4,505,225 + AO353_20520 0.84 +1.5 4,505,225 + AO353_20520 0.84 +1.0 4,505,225 + AO353_20520 0.84 -1.3 4,505,225 + AO353_20520 0.84 -0.5 4,505,225 + AO353_20520 0.84 +1.0 4,505,226 - AO353_20520 0.84 -1.3 4,505,226 - AO353_20520 0.84 -1.0 4,505,238 - AO353_20520 0.85 -1.0 4,505,256 - AO353_20520 0.87 -0.8 4,505,256 - AO353_20520 0.87 +1.1 4,505,256 - AO353_20520 0.87 +1.7 4,505,309 + -0.8 4,505,309 + -0.8 4,505,309 + +0.7 4,505,309 + +1.0 4,505,310 - +0.5 4,505,310 - -0.4 4,505,357 + +0.7 4,505,357 + -0.5 4,505,357 + +0.7 4,505,357 + +0.2 4,505,357 + +1.5 4,505,357 + -0.3 4,505,357 + -2.0 4,505,357 + -0.0 4,505,357 + -1.0 4,505,357 + +1.4 4,505,357 + +1.8 4,505,357 + -2.5 4,505,357 + -0.5 4,505,357 + +0.6 4,505,357 + -0.2 4,505,357 + -1.2 4,505,357 + -1.8 4,505,358 - -0.5 4,505,358 - -0.5 4,505,358 - -0.1 4,505,358 - +0.8 4,505,358 - +2.1 4,505,358 - +1.0 4,505,358 - -0.0 4,505,358 - -1.3 4,505,358 - -2.2 4,505,358 - +0.5 4,505,555 + -0.5 4,505,556 - -1.3 4,505,688 + +2.0 4,505,689 - +0.5 4,505,689 - +0.9 4,505,689 - -2.4 4,505,743 - -2.0 4,505,743 - +0.0 4,505,743 - -0.3 4,505,799 + -1.3 4,505,799 + +0.8 4,505,799 + -0.8 4,505,799 + -0.5 4,505,800 - -2.0 4,505,800 - -1.8 4,505,980 + AO353_20530 0.77 -1.6 4,505,980 + AO353_20530 0.77 +0.9 4,505,980 + AO353_20530 0.77 -1.3 4,505,980 + AO353_20530 0.77 +1.8 4,505,980 + AO353_20530 0.77 -0.2 4,505,980 + AO353_20530 0.77 +1.5 4,505,980 + AO353_20530 0.77 +1.0 4,505,980 + AO353_20530 0.77 -0.3 4,505,981 - AO353_20530 0.77 -0.8 4,505,981 - AO353_20530 0.77 -0.8 4,505,981 - AO353_20530 0.77 +1.9 4,505,981 - AO353_20530 0.77 +0.6 4,505,981 - AO353_20530 0.77 +1.1 4,505,981 - AO353_20530 0.77 +1.5 4,505,989 + AO353_20530 0.81 +0.4 4,505,990 - AO353_20530 0.81 -0.3 4,505,990 - AO353_20530 0.81 -1.8 4,506,081 - AO353_20535 0.20 -1.5 4,506,081 - AO353_20535 0.20 -2.5 4,506,133 + AO353_20535 0.44 +1.2 4,506,133 + AO353_20535 0.44 -1.3 4,506,133 + AO353_20535 0.44 +2.0 4,506,134 - AO353_20535 0.45 +1.4 4,506,134 - AO353_20535 0.45 -0.3 4,506,134 - AO353_20535 0.45 +0.7 4,506,232 + -1.2 4,506,232 + -0.2 4,506,233 - +0.5 4,506,233 - +0.4 4,506,233 - +1.1 4,506,233 - -0.0 4,506,249 + -0.8 4,506,249 + +1.0 4,506,249 + +1.0 4,506,249 + -0.8 4,506,262 + -0.3 4,506,263 - +2.4 4,506,263 - -0.4 4,506,263 - +1.5 4,506,289 + +1.3 4,506,289 + -0.3 4,506,289 + +1.0 4,506,290 - +2.8 4,506,290 - +0.2 4,506,290 - -0.3 4,506,302 - -1.8 4,506,302 - -0.4 4,506,302 - -2.5 4,506,359 + -1.8 4,506,359 - -1.3
Or see this region's nucleotide sequence