Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20520

Experiment: L-Ornithine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_20515 and AO353_20520 are separated by 1 nucleotidesAO353_20520 and AO353_20525 are separated by 111 nucleotidesAO353_20525 and AO353_20530 are separated by 253 nucleotidesAO353_20530 and AO353_20535 are separated by 6 nucleotides AO353_20515: AO353_20515 - nicotinate phosphoribosyltransferase, at 4,503,298 to 4,504,527 _20515 AO353_20520: AO353_20520 - NAD synthetase, at 4,504,529 to 4,505,359 _20520 AO353_20525: AO353_20525 - tRNA-Asn, at 4,505,471 to 4,505,546 _20525 AO353_20530: AO353_20530 - hypothetical protein, at 4,505,800 to 4,506,033 _20530 AO353_20535: AO353_20535 - hypothetical protein, at 4,506,040 to 4,506,249 _20535 Position (kb) 4504 4505 4506Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4503.534 kb on + strand, within AO353_20515at 4503.535 kb on - strand, within AO353_20515at 4503.535 kb on - strand, within AO353_20515at 4503.535 kb on - strand, within AO353_20515at 4503.550 kb on + strand, within AO353_20515at 4503.550 kb on + strand, within AO353_20515at 4503.550 kb on + strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.551 kb on - strand, within AO353_20515at 4503.604 kb on + strand, within AO353_20515at 4503.605 kb on - strand, within AO353_20515at 4503.605 kb on - strand, within AO353_20515at 4503.727 kb on + strand, within AO353_20515at 4503.727 kb on + strand, within AO353_20515at 4503.728 kb on - strand, within AO353_20515at 4503.766 kb on + strand, within AO353_20515at 4503.766 kb on + strand, within AO353_20515at 4503.944 kb on - strand, within AO353_20515at 4504.060 kb on + strand, within AO353_20515at 4504.060 kb on + strand, within AO353_20515at 4504.061 kb on - strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.132 kb on + strand, within AO353_20515at 4504.133 kb on - strand, within AO353_20515at 4504.133 kb on - strand, within AO353_20515at 4504.147 kb on + strand, within AO353_20515at 4504.147 kb on + strand, within AO353_20515at 4504.148 kb on - strand, within AO353_20515at 4504.148 kb on - strand, within AO353_20515at 4504.148 kb on - strand, within AO353_20515at 4504.210 kb on + strand, within AO353_20515at 4504.210 kb on + strand, within AO353_20515at 4504.211 kb on - strand, within AO353_20515at 4504.474 kb on + strandat 4504.487 kb on + strandat 4504.487 kb on + strandat 4504.487 kb on + strandat 4504.488 kb on - strandat 4504.488 kb on - strandat 4504.528 kb on + strandat 4504.529 kb on - strandat 4504.529 kb on - strandat 4504.534 kb on + strandat 4504.534 kb on + strandat 4504.534 kb on + strandat 4504.534 kb on + strandat 4504.535 kb on - strandat 4504.535 kb on - strandat 4504.535 kb on - strandat 4504.535 kb on - strandat 4504.535 kb on - strandat 4504.787 kb on + strand, within AO353_20520at 4504.787 kb on + strand, within AO353_20520at 4504.985 kb on + strand, within AO353_20520at 4504.985 kb on + strand, within AO353_20520at 4504.985 kb on + strand, within AO353_20520at 4504.985 kb on + strand, within AO353_20520at 4504.985 kb on + strand, within AO353_20520at 4504.986 kb on - strand, within AO353_20520at 4505.225 kb on + strand, within AO353_20520at 4505.225 kb on + strand, within AO353_20520at 4505.225 kb on + strand, within AO353_20520at 4505.225 kb on + strand, within AO353_20520at 4505.225 kb on + strand, within AO353_20520at 4505.226 kb on - strand, within AO353_20520at 4505.226 kb on - strand, within AO353_20520at 4505.238 kb on - strand, within AO353_20520at 4505.256 kb on - strand, within AO353_20520at 4505.256 kb on - strand, within AO353_20520at 4505.256 kb on - strand, within AO353_20520at 4505.309 kb on + strandat 4505.309 kb on + strandat 4505.309 kb on + strandat 4505.309 kb on + strandat 4505.310 kb on - strandat 4505.310 kb on - strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.357 kb on + strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.358 kb on - strandat 4505.555 kb on + strandat 4505.556 kb on - strandat 4505.688 kb on + strandat 4505.689 kb on - strandat 4505.689 kb on - strandat 4505.689 kb on - strandat 4505.743 kb on - strandat 4505.743 kb on - strandat 4505.743 kb on - strandat 4505.799 kb on + strandat 4505.799 kb on + strandat 4505.799 kb on + strandat 4505.799 kb on + strandat 4505.800 kb on - strandat 4505.800 kb on - strandat 4505.980 kb on + strand, within AO353_20530at 4505.980 kb on + strand, within AO353_20530at 4505.980 kb on + strand, within AO353_20530at 4505.980 kb on + strand, within AO353_20530at 4505.980 kb on + strand, within AO353_20530at 4505.980 kb on + strand, within AO353_20530at 4505.980 kb on + strand, within AO353_20530at 4505.980 kb on + strand, within AO353_20530at 4505.981 kb on - strand, within AO353_20530at 4505.981 kb on - strand, within AO353_20530at 4505.981 kb on - strand, within AO353_20530at 4505.981 kb on - strand, within AO353_20530at 4505.981 kb on - strand, within AO353_20530at 4505.981 kb on - strand, within AO353_20530at 4505.989 kb on + strand, within AO353_20530at 4505.990 kb on - strand, within AO353_20530at 4505.990 kb on - strand, within AO353_20530at 4506.081 kb on - strand, within AO353_20535at 4506.081 kb on - strand, within AO353_20535at 4506.133 kb on + strand, within AO353_20535at 4506.133 kb on + strand, within AO353_20535at 4506.133 kb on + strand, within AO353_20535at 4506.134 kb on - strand, within AO353_20535at 4506.134 kb on - strand, within AO353_20535at 4506.134 kb on - strand, within AO353_20535at 4506.232 kb on + strandat 4506.232 kb on + strandat 4506.233 kb on - strandat 4506.233 kb on - strandat 4506.233 kb on - strandat 4506.233 kb on - strandat 4506.249 kb on + strandat 4506.249 kb on + strandat 4506.249 kb on + strandat 4506.249 kb on + strandat 4506.262 kb on + strandat 4506.263 kb on - strandat 4506.263 kb on - strandat 4506.263 kb on - strandat 4506.289 kb on + strandat 4506.289 kb on + strandat 4506.289 kb on + strandat 4506.290 kb on - strandat 4506.290 kb on - strandat 4506.290 kb on - strandat 4506.302 kb on - strandat 4506.302 kb on - strandat 4506.302 kb on - strandat 4506.359 kb on + strandat 4506.359 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
remove
4,503,534 + AO353_20515 0.19 +0.8
4,503,535 - AO353_20515 0.19 +1.4
4,503,535 - AO353_20515 0.19 +0.7
4,503,535 - AO353_20515 0.19 -0.6
4,503,550 + AO353_20515 0.20 +2.4
4,503,550 + AO353_20515 0.20 -0.3
4,503,550 + AO353_20515 0.20 -1.9
4,503,551 - AO353_20515 0.21 +1.7
4,503,551 - AO353_20515 0.21 +0.1
4,503,551 - AO353_20515 0.21 +0.1
4,503,551 - AO353_20515 0.21 -0.3
4,503,604 + AO353_20515 0.25 -0.4
4,503,605 - AO353_20515 0.25 +1.6
4,503,605 - AO353_20515 0.25 +1.6
4,503,727 + AO353_20515 0.35 -1.4
4,503,727 + AO353_20515 0.35 -2.4
4,503,728 - AO353_20515 0.35 +1.1
4,503,766 + AO353_20515 0.38 -0.3
4,503,766 + AO353_20515 0.38 -1.4
4,503,944 - AO353_20515 0.53 +1.0
4,504,060 + AO353_20515 0.62 +0.2
4,504,060 + AO353_20515 0.62 +0.7
4,504,061 - AO353_20515 0.62 +0.7
4,504,132 + AO353_20515 0.68 +1.0
4,504,132 + AO353_20515 0.68 +1.1
4,504,132 + AO353_20515 0.68 -1.8
4,504,132 + AO353_20515 0.68 +0.1
4,504,133 - AO353_20515 0.68 -1.0
4,504,133 - AO353_20515 0.68 +1.4
4,504,147 + AO353_20515 0.69 +1.0
4,504,147 + AO353_20515 0.69 +0.9
4,504,148 - AO353_20515 0.69 +2.7
4,504,148 - AO353_20515 0.69 +3.0
4,504,148 - AO353_20515 0.69 -2.3
4,504,210 + AO353_20515 0.74 +1.2
4,504,210 + AO353_20515 0.74 +1.6
4,504,211 - AO353_20515 0.74 -0.4
4,504,474 + -1.3
4,504,487 + -0.7
4,504,487 + -0.8
4,504,487 + +0.4
4,504,488 - -0.0
4,504,488 - -0.9
4,504,528 + -1.6
4,504,529 - -1.0
4,504,529 - -0.8
4,504,534 + -1.3
4,504,534 + -0.0
4,504,534 + -1.0
4,504,534 + -0.3
4,504,535 - +1.8
4,504,535 - -0.5
4,504,535 - +1.2
4,504,535 - +1.8
4,504,535 - +0.3
4,504,787 + AO353_20520 0.31 +1.5
4,504,787 + AO353_20520 0.31 -1.3
4,504,985 + AO353_20520 0.55 -0.1
4,504,985 + AO353_20520 0.55 -1.8
4,504,985 + AO353_20520 0.55 -2.0
4,504,985 + AO353_20520 0.55 +1.4
4,504,985 + AO353_20520 0.55 -1.6
4,504,986 - AO353_20520 0.55 -2.4
4,505,225 + AO353_20520 0.84 +1.5
4,505,225 + AO353_20520 0.84 +1.0
4,505,225 + AO353_20520 0.84 -1.3
4,505,225 + AO353_20520 0.84 -0.5
4,505,225 + AO353_20520 0.84 +1.0
4,505,226 - AO353_20520 0.84 -1.3
4,505,226 - AO353_20520 0.84 -1.0
4,505,238 - AO353_20520 0.85 -1.0
4,505,256 - AO353_20520 0.87 -0.8
4,505,256 - AO353_20520 0.87 +1.1
4,505,256 - AO353_20520 0.87 +1.7
4,505,309 + -0.8
4,505,309 + -0.8
4,505,309 + +0.7
4,505,309 + +1.0
4,505,310 - +0.5
4,505,310 - -0.4
4,505,357 + +0.7
4,505,357 + -0.5
4,505,357 + +0.7
4,505,357 + +0.2
4,505,357 + +1.5
4,505,357 + -0.3
4,505,357 + -2.0
4,505,357 + -0.0
4,505,357 + -1.0
4,505,357 + +1.4
4,505,357 + +1.8
4,505,357 + -2.5
4,505,357 + -0.5
4,505,357 + +0.6
4,505,357 + -0.2
4,505,357 + -1.2
4,505,357 + -1.8
4,505,358 - -0.5
4,505,358 - -0.5
4,505,358 - -0.1
4,505,358 - +0.8
4,505,358 - +2.1
4,505,358 - +1.0
4,505,358 - -0.0
4,505,358 - -1.3
4,505,358 - -2.2
4,505,358 - +0.5
4,505,555 + -0.5
4,505,556 - -1.3
4,505,688 + +2.0
4,505,689 - +0.5
4,505,689 - +0.9
4,505,689 - -2.4
4,505,743 - -2.0
4,505,743 - +0.0
4,505,743 - -0.3
4,505,799 + -1.3
4,505,799 + +0.8
4,505,799 + -0.8
4,505,799 + -0.5
4,505,800 - -2.0
4,505,800 - -1.8
4,505,980 + AO353_20530 0.77 -1.6
4,505,980 + AO353_20530 0.77 +0.9
4,505,980 + AO353_20530 0.77 -1.3
4,505,980 + AO353_20530 0.77 +1.8
4,505,980 + AO353_20530 0.77 -0.2
4,505,980 + AO353_20530 0.77 +1.5
4,505,980 + AO353_20530 0.77 +1.0
4,505,980 + AO353_20530 0.77 -0.3
4,505,981 - AO353_20530 0.77 -0.8
4,505,981 - AO353_20530 0.77 -0.8
4,505,981 - AO353_20530 0.77 +1.9
4,505,981 - AO353_20530 0.77 +0.6
4,505,981 - AO353_20530 0.77 +1.1
4,505,981 - AO353_20530 0.77 +1.5
4,505,989 + AO353_20530 0.81 +0.4
4,505,990 - AO353_20530 0.81 -0.3
4,505,990 - AO353_20530 0.81 -1.8
4,506,081 - AO353_20535 0.20 -1.5
4,506,081 - AO353_20535 0.20 -2.5
4,506,133 + AO353_20535 0.44 +1.2
4,506,133 + AO353_20535 0.44 -1.3
4,506,133 + AO353_20535 0.44 +2.0
4,506,134 - AO353_20535 0.45 +1.4
4,506,134 - AO353_20535 0.45 -0.3
4,506,134 - AO353_20535 0.45 +0.7
4,506,232 + -1.2
4,506,232 + -0.2
4,506,233 - +0.5
4,506,233 - +0.4
4,506,233 - +1.1
4,506,233 - -0.0
4,506,249 + -0.8
4,506,249 + +1.0
4,506,249 + +1.0
4,506,249 + -0.8
4,506,262 + -0.3
4,506,263 - +2.4
4,506,263 - -0.4
4,506,263 - +1.5
4,506,289 + +1.3
4,506,289 + -0.3
4,506,289 + +1.0
4,506,290 - +2.8
4,506,290 - +0.2
4,506,290 - -0.3
4,506,302 - -1.8
4,506,302 - -0.4
4,506,302 - -2.5
4,506,359 + -1.8
4,506,359 - -1.3

Or see this region's nucleotide sequence