Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04420 and AO353_04425 overlap by 4 nucleotides AO353_04425 and AO353_04430 are separated by 66 nucleotides AO353_04430 and AO353_04435 are separated by 148 nucleotides AO353_04435 and AO353_04440 are separated by 39 nucleotides
AO353_04420: AO353_04420 - Fe-S protein, at 952,164 to 952,379
_04420
AO353_04425: AO353_04425 - hypothetical protein, at 952,376 to 952,900
_04425
AO353_04430: AO353_04430 - DNA mismatch repair protein MutT, at 952,967 to 953,566
_04430
AO353_04435: AO353_04435 - ADP-ribose pyrophosphatase, at 953,715 to 954,266
_04435
AO353_04440: AO353_04440 - hypothetical protein, at 954,306 to 954,809
_04440
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 951.972 kb on + strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.973 kb on - strand at 951.973 kb on - strand at 951.973 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.150 kb on + strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.169 kb on + strand at 952.263 kb on - strand, within AO353_04420 at 952.263 kb on - strand, within AO353_04420 at 952.313 kb on + strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.356 kb on + strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.421 kb on - strand at 952.421 kb on - strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.481 kb on + strand, within AO353_04425 at 952.481 kb on + strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.623 kb on + strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand at 952.840 kb on + strand, within AO353_04425 at 952.840 kb on + strand, within AO353_04425 at 952.841 kb on - strand, within AO353_04425 at 952.893 kb on + strand at 952.893 kb on + strand at 952.894 kb on - strand at 952.894 kb on - strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.954 kb on - strand at 952.973 kb on - strand at 952.973 kb on - strand at 952.973 kb on - strand at 952.973 kb on - strand at 952.978 kb on + strand at 952.979 kb on - strand at 953.019 kb on + strand at 953.019 kb on + strand at 953.019 kb on + strand at 953.073 kb on + strand, within AO353_04430 at 953.074 kb on - strand, within AO353_04430 at 953.088 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.473 kb on + strand, within AO353_04430 at 953.473 kb on + strand, within AO353_04430 at 953.521 kb on + strand at 953.552 kb on + strand at 953.552 kb on + strand at 953.552 kb on + strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.584 kb on + strand at 953.585 kb on - strand at 953.585 kb on - strand at 953.585 kb on - strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.688 kb on + strand at 953.688 kb on + strand at 953.688 kb on + strand at 953.689 kb on - strand at 953.694 kb on + strand at 953.695 kb on - strand at 953.695 kb on - strand at 953.695 kb on - strand at 953.784 kb on + strand, within AO353_04435 at 953.784 kb on + strand, within AO353_04435 at 953.784 kb on + strand, within AO353_04435 at 953.828 kb on + strand, within AO353_04435 at 953.828 kb on + strand, within AO353_04435 at 953.872 kb on + strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.014 kb on + strand, within AO353_04435 at 954.014 kb on + strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.205 kb on + strand, within AO353_04435 at 954.206 kb on - strand, within AO353_04435 at 954.264 kb on + strand at 954.264 kb on + strand at 954.264 kb on + strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.271 kb on + strand at 954.271 kb on + strand at 954.278 kb on - strand at 954.278 kb on - strand at 954.285 kb on - strand at 954.285 kb on - strand at 954.304 kb on + strand at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 951,972 + +0.2 951,972 + +0.0 951,972 + +2.5 951,973 - -0.7 951,973 - +1.8 951,973 - +0.6 952,070 - -1.0 952,070 - +0.6 952,070 - +1.0 952,070 - +0.4 952,150 + +0.4 952,151 - +2.3 952,151 - -1.2 952,151 - -0.4 952,169 + -0.1 952,263 - AO353_04420 0.46 -1.2 952,263 - AO353_04420 0.46 -1.0 952,313 + AO353_04420 0.69 +2.2 952,314 - AO353_04420 0.69 -0.7 952,314 - AO353_04420 0.69 -2.4 952,314 - AO353_04420 0.69 -1.8 952,356 + AO353_04420 0.89 +0.2 952,357 - AO353_04420 0.89 -3.1 952,357 - AO353_04420 0.89 +1.2 952,420 + -0.3 952,420 + -1.1 952,420 + +2.1 952,420 + -0.7 952,420 + -2.0 952,421 - +0.0 952,421 - -2.6 952,428 + +0.9 952,428 + +0.0 952,428 + -1.4 952,428 + +1.5 952,428 + +0.0 952,428 + -1.6 952,428 + -1.6 952,428 + -1.7 952,429 - AO353_04425 0.10 +0.0 952,429 - AO353_04425 0.10 -0.4 952,429 - AO353_04425 0.10 +3.6 952,429 - AO353_04425 0.10 +1.0 952,429 - AO353_04425 0.10 +2.2 952,429 - AO353_04425 0.10 -1.2 952,429 - AO353_04425 0.10 +0.5 952,481 + AO353_04425 0.20 +1.8 952,481 + AO353_04425 0.20 +0.5 952,482 - AO353_04425 0.20 +0.2 952,482 - AO353_04425 0.20 +1.2 952,482 - AO353_04425 0.20 -1.0 952,482 - AO353_04425 0.20 -1.0 952,484 + AO353_04425 0.21 -1.1 952,484 + AO353_04425 0.21 -3.1 952,484 + AO353_04425 0.21 +0.0 952,484 + AO353_04425 0.21 -0.3 952,484 + AO353_04425 0.21 +1.4 952,484 + AO353_04425 0.21 +0.1 952,485 - AO353_04425 0.21 +1.6 952,485 - AO353_04425 0.21 -3.3 952,485 - AO353_04425 0.21 -0.7 952,485 - AO353_04425 0.21 -0.7 952,485 - AO353_04425 0.21 +1.0 952,623 + AO353_04425 0.47 -1.0 952,624 - AO353_04425 0.47 -1.4 952,624 - AO353_04425 0.47 -1.0 952,624 - AO353_04425 0.47 +0.2 952,624 - AO353_04425 0.47 -0.7 952,735 + AO353_04425 0.68 -0.1 952,735 + AO353_04425 0.68 +0.0 952,735 + AO353_04425 0.68 -1.2 952,735 + AO353_04425 0.68 -0.3 952,735 + AO353_04425 0.68 +0.0 952,735 + AO353_04425 0.68 +0.0 952,735 + AO353_04425 0.68 -1.2 952,735 + AO353_04425 0.68 +0.9 952,735 + AO353_04425 0.68 +0.6 952,735 + AO353_04425 0.68 +0.2 952,735 + AO353_04425 0.68 -0.0 952,735 + AO353_04425 0.68 -1.2 952,736 - AO353_04425 0.69 +0.6 952,736 - AO353_04425 0.69 +0.8 952,736 - AO353_04425 0.69 +2.1 952,736 - AO353_04425 0.69 +1.5 952,736 - AO353_04425 0.69 -1.4 952,736 - AO353_04425 0.69 -2.9 952,736 - AO353_04425 0.69 -2.0 952,736 - AO353_04425 0.69 -0.1 952,736 - AO353_04425 0.69 +1.8 952,736 - AO353_04425 0.69 +1.3 952,736 - +1.0 952,840 + AO353_04425 0.88 -0.6 952,840 + AO353_04425 0.88 -0.3 952,841 - AO353_04425 0.89 +1.7 952,893 + -0.1 952,893 + +2.0 952,894 - +0.6 952,894 - -1.0 952,903 + +0.0 952,903 + -1.6 952,903 + +2.6 952,903 + +0.0 952,903 + -1.7 952,903 + -0.1 952,903 + +0.4 952,904 - +1.2 952,904 - +0.0 952,904 - -1.7 952,904 - +1.3 952,904 - -0.1 952,904 - +1.9 952,904 - +1.6 952,904 - -0.7 952,904 - -2.7 952,904 - -0.4 952,904 - -2.0 952,954 - -0.2 952,973 - +0.6 952,973 - -1.0 952,973 - +0.6 952,973 - -0.6 952,978 + +0.1 952,979 - -1.0 953,019 + +0.6 953,019 + +0.2 953,019 + +2.4 953,073 + AO353_04430 0.18 -1.4 953,074 - AO353_04430 0.18 +0.2 953,088 + AO353_04430 0.20 -0.5 953,100 + AO353_04430 0.22 +0.5 953,100 + AO353_04430 0.22 -0.1 953,100 + AO353_04430 0.22 +1.0 953,100 + AO353_04430 0.22 +2.1 953,100 + AO353_04430 0.22 -1.5 953,100 + AO353_04430 0.22 +0.2 953,101 - AO353_04430 0.22 +0.9 953,101 - AO353_04430 0.22 +0.3 953,101 - AO353_04430 0.22 -0.4 953,101 - AO353_04430 0.22 -1.6 953,101 - AO353_04430 0.22 +0.6 953,101 - AO353_04430 0.22 -1.2 953,101 - AO353_04430 0.22 -2.6 953,241 + AO353_04430 0.46 -3.2 953,241 + AO353_04430 0.46 -2.1 953,241 + AO353_04430 0.46 -2.1 953,241 + AO353_04430 0.46 -2.0 953,241 + AO353_04430 0.46 +1.2 953,241 + AO353_04430 0.46 +1.2 953,473 + AO353_04430 0.84 -0.4 953,473 + AO353_04430 0.84 +2.1 953,521 + -0.6 953,552 + -1.6 953,552 + -0.7 953,552 + +1.3 953,553 - +0.6 953,553 - -1.1 953,553 - +2.6 953,553 - +1.6 953,553 - +1.4 953,553 - -1.8 953,584 + -1.7 953,585 - -1.6 953,585 - -0.6 953,585 - +0.7 953,588 + +0.4 953,588 + -1.2 953,588 + -1.4 953,588 + -1.2 953,588 + -2.0 953,588 + -2.5 953,589 - +1.4 953,589 - -0.4 953,589 - -0.7 953,589 - -1.4 953,688 + +0.9 953,688 + -1.7 953,688 + -3.0 953,689 - -2.9 953,694 + -0.1 953,695 - +2.6 953,695 - -1.0 953,695 - +0.8 953,784 + AO353_04435 0.12 -1.8 953,784 + AO353_04435 0.12 -0.2 953,784 + AO353_04435 0.12 -0.1 953,828 + AO353_04435 0.20 -1.1 953,828 + AO353_04435 0.20 -1.4 953,872 + AO353_04435 0.28 +0.9 953,873 - AO353_04435 0.29 -0.7 953,873 - AO353_04435 0.29 -2.6 953,873 - AO353_04435 0.29 -1.6 953,873 - AO353_04435 0.29 -1.4 954,012 + AO353_04435 0.54 +0.6 954,012 + AO353_04435 0.54 -2.2 954,012 + AO353_04435 0.54 -2.0 954,012 + AO353_04435 0.54 +1.3 954,012 + AO353_04435 0.54 -0.7 954,012 + AO353_04435 0.54 +0.0 954,012 + AO353_04435 0.54 +1.4 954,012 + AO353_04435 0.54 +0.0 954,012 + AO353_04435 0.54 +0.0 954,012 + AO353_04435 0.54 -0.4 954,012 + AO353_04435 0.54 +0.6 954,012 + AO353_04435 0.54 +0.3 954,012 + AO353_04435 0.54 -1.0 954,012 + AO353_04435 0.54 +0.0 954,012 + AO353_04435 0.54 +0.8 954,012 + AO353_04435 0.54 -0.1 954,012 + AO353_04435 0.54 +1.0 954,012 + AO353_04435 0.54 +0.4 954,012 + AO353_04435 0.54 +1.6 954,013 - AO353_04435 0.54 -1.0 954,013 - AO353_04435 0.54 +3.2 954,013 - AO353_04435 0.54 -1.0 954,013 - AO353_04435 0.54 -1.7 954,013 - AO353_04435 0.54 +1.3 954,013 - AO353_04435 0.54 -0.4 954,013 - AO353_04435 0.54 -1.0 954,013 - AO353_04435 0.54 -0.4 954,013 - AO353_04435 0.54 +0.0 954,013 - AO353_04435 0.54 +1.0 954,013 - AO353_04435 0.54 +0.6 954,013 - AO353_04435 0.54 +1.3 954,013 - AO353_04435 0.54 +1.0 954,013 - AO353_04435 0.54 +2.0 954,014 + AO353_04435 0.54 -0.4 954,014 + AO353_04435 0.54 -3.0 954,015 - AO353_04435 0.54 -2.5 954,015 - AO353_04435 0.54 +0.4 954,015 - AO353_04435 0.54 -0.5 954,052 + AO353_04435 0.61 -2.8 954,052 + AO353_04435 0.61 -1.8 954,052 + AO353_04435 0.61 +1.0 954,052 + AO353_04435 0.61 -1.4 954,052 + AO353_04435 0.61 +1.6 954,052 + AO353_04435 0.61 +0.4 954,052 + AO353_04435 0.61 +1.1 954,052 + AO353_04435 0.61 +1.6 954,053 - AO353_04435 0.61 +0.3 954,053 - AO353_04435 0.61 +1.0 954,053 - AO353_04435 0.61 +0.5 954,053 - AO353_04435 0.61 +0.0 954,178 + AO353_04435 0.84 +0.0 954,178 + AO353_04435 0.84 -1.4 954,178 + AO353_04435 0.84 -1.5 954,178 + AO353_04435 0.84 -1.2 954,178 + AO353_04435 0.84 -0.4 954,179 - AO353_04435 0.84 -0.2 954,179 - AO353_04435 0.84 +1.3 954,179 - AO353_04435 0.84 +1.4 954,205 + AO353_04435 0.89 -1.5 954,206 - AO353_04435 0.89 +0.3 954,264 + -0.4 954,264 + -1.0 954,264 + -0.6 954,265 - -1.6 954,265 - -0.1 954,265 - +2.4 954,265 - +1.4 954,271 + +0.5 954,271 + -0.4 954,278 - +1.8 954,278 - +0.2 954,285 - -1.6 954,285 - -1.7 954,304 + -1.4 954,462 + AO353_04440 0.31 +0.0 954,462 + AO353_04440 0.31 +1.0 954,462 + AO353_04440 0.31 -0.1 954,522 - AO353_04440 0.43 -1.6 954,522 - AO353_04440 0.43 +3.1 954,522 - AO353_04440 0.43 +1.0 954,522 - AO353_04440 0.43 +0.4 954,537 + AO353_04440 0.46 -1.2 954,537 + AO353_04440 0.46 -1.3 954,537 + AO353_04440 0.46 -1.7 954,538 - AO353_04440 0.46 -1.2 954,538 - AO353_04440 0.46 -0.7 954,538 - AO353_04440 0.46 -2.8 954,538 - AO353_04440 0.46 +1.2 954,538 - AO353_04440 0.46 -0.4
Or see this region's nucleotide sequence