Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03525 and AO353_03530 are separated by 263 nucleotides AO353_03530 and AO353_03535 are separated by 63 nucleotides AO353_03535 and AO353_03540 are separated by 1 nucleotides AO353_03540 and AO353_03545 are separated by 169 nucleotides
AO353_03525: AO353_03525 - quinolinate synthase A, at 756,365 to 757,423
_03525
AO353_03530: AO353_03530 - tRNA-Lys, at 757,687 to 757,762
_03530
AO353_03535: AO353_03535 - 7-cyano-7-deazaguanine synthase, at 757,826 to 758,518
_03535
AO353_03540: AO353_03540 - 7-carboxy-7-deazaguanine synthase, at 758,520 to 759,167
_03540
AO353_03545: AO353_03545 - hypothetical protein, at 759,337 to 760,170
_03545
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 756.870 kb on + strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 756.871 kb on - strand, within AO353_03525 at 757.005 kb on + strand, within AO353_03525 at 757.005 kb on + strand, within AO353_03525 at 757.005 kb on + strand, within AO353_03525 at 757.005 kb on + strand, within AO353_03525 at 757.005 kb on + strand, within AO353_03525 at 757.005 kb on + strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.006 kb on - strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand, within AO353_03525 at 757.007 kb on + strand at 757.007 kb on + strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.008 kb on - strand, within AO353_03525 at 757.019 kb on - strand, within AO353_03525 at 757.019 kb on - strand, within AO353_03525 at 757.019 kb on - strand, within AO353_03525 at 757.275 kb on + strand, within AO353_03525 at 757.275 kb on + strand, within AO353_03525 at 757.275 kb on + strand, within AO353_03525 at 757.276 kb on - strand, within AO353_03525 at 757.394 kb on + strand at 757.463 kb on + strand at 757.464 kb on - strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.465 kb on + strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.466 kb on - strand at 757.509 kb on + strand at 757.509 kb on + strand at 757.510 kb on - strand at 757.510 kb on - strand at 757.510 kb on - strand at 757.510 kb on - strand at 757.510 kb on - strand at 757.510 kb on - strand at 757.549 kb on - strand at 757.661 kb on - strand at 757.784 kb on + strand at 757.823 kb on - strand at 757.953 kb on + strand, within AO353_03535 at 757.953 kb on + strand, within AO353_03535 at 757.953 kb on + strand, within AO353_03535 at 757.954 kb on - strand, within AO353_03535 at 758.121 kb on + strand, within AO353_03535 at 758.121 kb on + strand, within AO353_03535 at 758.122 kb on - strand, within AO353_03535 at 758.122 kb on - strand, within AO353_03535 at 758.204 kb on - strand, within AO353_03535 at 758.220 kb on + strand, within AO353_03535 at 758.220 kb on + strand, within AO353_03535 at 758.220 kb on + strand, within AO353_03535 at 758.220 kb on + strand, within AO353_03535 at 758.220 kb on + strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.221 kb on - strand, within AO353_03535 at 758.233 kb on + strand, within AO353_03535 at 758.320 kb on + strand, within AO353_03535 at 758.320 kb on + strand, within AO353_03535 at 758.320 kb on + strand, within AO353_03535 at 758.320 kb on + strand, within AO353_03535 at 758.321 kb on - strand, within AO353_03535 at 758.321 kb on - strand, within AO353_03535 at 758.348 kb on + strand, within AO353_03535 at 758.391 kb on + strand, within AO353_03535 at 758.392 kb on - strand, within AO353_03535 at 758.392 kb on - strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.409 kb on + strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.410 kb on - strand, within AO353_03535 at 758.497 kb on + strand at 758.497 kb on + strand at 758.498 kb on - strand at 758.498 kb on - strand at 758.498 kb on - strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.548 kb on + strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.549 kb on - strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.552 kb on + strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.553 kb on - strand at 758.678 kb on - strand, within AO353_03540 at 758.708 kb on - strand, within AO353_03540 at 758.773 kb on + strand, within AO353_03540 at 758.852 kb on + strand, within AO353_03540 at 758.853 kb on - strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.901 kb on + strand, within AO353_03540 at 758.902 kb on - strand, within AO353_03540 at 758.902 kb on - strand, within AO353_03540 at 758.927 kb on + strand, within AO353_03540 at 758.927 kb on + strand, within AO353_03540 at 758.928 kb on - strand, within AO353_03540 at 758.965 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.037 kb on + strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.038 kb on - strand, within AO353_03540 at 759.053 kb on - strand, within AO353_03540 at 759.090 kb on + strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.091 kb on - strand, within AO353_03540 at 759.134 kb on - strand at 759.167 kb on + strand at 759.167 kb on + strand at 759.167 kb on + strand at 759.168 kb on - strand at 759.168 kb on - strand at 759.168 kb on - strand at 759.189 kb on + strand at 759.189 kb on + strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.190 kb on - strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.219 kb on + strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.220 kb on - strand at 759.319 kb on + strand at 759.320 kb on - strand at 759.320 kb on - strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.338 kb on + strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.339 kb on - strand at 759.381 kb on + strand at 759.432 kb on + strand, within AO353_03545 at 759.451 kb on + strand, within AO353_03545 at 759.451 kb on + strand, within AO353_03545 at 759.452 kb on - strand, within AO353_03545 at 759.452 kb on - strand, within AO353_03545 at 759.467 kb on + strand, within AO353_03545 at 759.467 kb on + strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.468 kb on - strand, within AO353_03545 at 759.500 kb on + strand, within AO353_03545 at 759.501 kb on - strand, within AO353_03545
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 756,870 + AO353_03525 0.48 +0.7 756,871 - AO353_03525 0.48 +0.6 756,871 - AO353_03525 0.48 -0.7 756,871 - AO353_03525 0.48 -1.0 756,871 - AO353_03525 0.48 -0.2 756,871 - AO353_03525 0.48 -1.1 756,871 - AO353_03525 0.48 -1.0 756,871 - AO353_03525 0.48 -1.3 756,871 - AO353_03525 0.48 -0.3 757,005 + AO353_03525 0.60 -2.3 757,005 + AO353_03525 0.60 +0.0 757,005 + AO353_03525 0.60 -1.0 757,005 + AO353_03525 0.60 -0.7 757,005 + AO353_03525 0.60 +1.9 757,005 + AO353_03525 0.60 +0.3 757,006 - AO353_03525 0.61 -1.3 757,006 - AO353_03525 0.61 -0.6 757,006 - AO353_03525 0.61 -0.8 757,006 - AO353_03525 0.61 -1.7 757,006 - AO353_03525 0.61 +0.6 757,006 - AO353_03525 0.61 -1.0 757,006 - AO353_03525 0.61 +1.3 757,006 - AO353_03525 0.61 -1.8 757,006 - AO353_03525 0.61 +0.0 757,006 - AO353_03525 0.61 -1.0 757,007 + AO353_03525 0.61 +0.9 757,007 + AO353_03525 0.61 +0.2 757,007 + AO353_03525 0.61 +1.2 757,007 + AO353_03525 0.61 +1.0 757,007 + AO353_03525 0.61 +0.8 757,007 + AO353_03525 0.61 +2.4 757,007 + AO353_03525 0.61 -2.5 757,007 + AO353_03525 0.61 -0.4 757,007 + AO353_03525 0.61 +0.3 757,007 + AO353_03525 0.61 +0.3 757,007 + AO353_03525 0.61 +0.1 757,007 + AO353_03525 0.61 -0.6 757,007 + +1.6 757,007 + AO353_03525 0.61 +0.6 757,008 - AO353_03525 0.61 +0.1 757,008 - AO353_03525 0.61 +1.1 757,008 - AO353_03525 0.61 -1.0 757,008 - AO353_03525 0.61 -0.7 757,008 - AO353_03525 0.61 -1.0 757,008 - AO353_03525 0.61 +0.2 757,008 - AO353_03525 0.61 -0.3 757,008 - AO353_03525 0.61 +1.3 757,008 - AO353_03525 0.61 -2.3 757,019 - AO353_03525 0.62 +0.8 757,019 - AO353_03525 0.62 +0.6 757,019 - AO353_03525 0.62 -0.4 757,275 + AO353_03525 0.86 +0.6 757,275 + AO353_03525 0.86 -1.2 757,275 + AO353_03525 0.86 -1.1 757,276 - AO353_03525 0.86 -2.0 757,394 + +2.3 757,463 + +1.1 757,464 - +0.7 757,465 + -1.2 757,465 + -0.6 757,465 + -1.0 757,465 + -1.8 757,465 + -0.3 757,465 + +2.2 757,465 + -0.9 757,465 + +1.3 757,465 + +1.6 757,466 - +2.6 757,466 - +0.5 757,466 - +0.8 757,466 - -0.5 757,466 - -3.0 757,466 - +2.3 757,466 - +0.0 757,466 - +0.7 757,466 - -1.4 757,466 - +0.0 757,509 + -1.8 757,509 + +3.6 757,510 - +0.6 757,510 - +1.8 757,510 - -0.5 757,510 - -0.4 757,510 - +0.0 757,510 - -1.8 757,549 - -0.2 757,661 - -1.0 757,784 + +2.5 757,823 - -0.4 757,953 + AO353_03535 0.18 +1.2 757,953 + AO353_03535 0.18 -3.0 757,953 + AO353_03535 0.18 +2.1 757,954 - AO353_03535 0.18 +0.5 758,121 + AO353_03535 0.43 -2.1 758,121 + AO353_03535 0.43 +0.0 758,122 - AO353_03535 0.43 +2.6 758,122 - AO353_03535 0.43 +0.3 758,204 - AO353_03535 0.55 +1.0 758,220 + AO353_03535 0.57 +0.0 758,220 + AO353_03535 0.57 -1.9 758,220 + AO353_03535 0.57 +3.6 758,220 + AO353_03535 0.57 +0.4 758,220 + AO353_03535 0.57 -1.0 758,221 - AO353_03535 0.57 +0.5 758,221 - AO353_03535 0.57 -1.4 758,221 - AO353_03535 0.57 -0.7 758,221 - AO353_03535 0.57 +0.3 758,221 - AO353_03535 0.57 -2.0 758,221 - AO353_03535 0.57 +1.0 758,221 - AO353_03535 0.57 +0.0 758,221 - AO353_03535 0.57 +1.4 758,233 + AO353_03535 0.59 -0.7 758,320 + AO353_03535 0.71 -1.0 758,320 + AO353_03535 0.71 +3.2 758,320 + AO353_03535 0.71 -2.0 758,320 + AO353_03535 0.71 +0.7 758,321 - AO353_03535 0.71 +1.6 758,321 - AO353_03535 0.71 +0.6 758,348 + AO353_03535 0.75 +0.6 758,391 + AO353_03535 0.82 -0.1 758,392 - AO353_03535 0.82 +2.1 758,392 - AO353_03535 0.82 +0.5 758,409 + AO353_03535 0.84 -2.0 758,409 + AO353_03535 0.84 -0.3 758,409 + AO353_03535 0.84 -1.8 758,410 - AO353_03535 0.84 -0.6 758,410 - AO353_03535 0.84 +0.6 758,410 - AO353_03535 0.84 +2.0 758,410 - AO353_03535 0.84 +0.2 758,497 + -0.6 758,497 + +0.3 758,498 - +1.2 758,498 - +1.2 758,498 - +2.0 758,548 + -1.2 758,548 + +1.4 758,548 + +0.3 758,548 + +0.8 758,549 - -1.0 758,549 - -1.7 758,549 - -1.8 758,549 - +0.6 758,549 - -1.0 758,549 - -1.5 758,552 + +0.5 758,552 + +1.8 758,552 + +2.0 758,552 + +0.6 758,552 + +0.6 758,553 - +0.9 758,553 - +0.0 758,553 - -0.8 758,553 - +2.6 758,553 - +0.0 758,553 - +0.0 758,553 - -0.5 758,678 - AO353_03540 0.24 +0.0 758,708 - AO353_03540 0.29 -0.3 758,773 + AO353_03540 0.39 -1.4 758,852 + AO353_03540 0.51 -0.4 758,853 - AO353_03540 0.51 +1.0 758,901 + AO353_03540 0.59 -0.7 758,901 + AO353_03540 0.59 +1.2 758,901 + AO353_03540 0.59 -0.4 758,901 + AO353_03540 0.59 -0.5 758,901 + AO353_03540 0.59 -0.4 758,901 + AO353_03540 0.59 +0.8 758,901 + AO353_03540 0.59 -2.2 758,901 + AO353_03540 0.59 +1.3 758,902 - AO353_03540 0.59 -2.3 758,902 - AO353_03540 0.59 +1.8 758,927 + AO353_03540 0.63 +1.6 758,927 + AO353_03540 0.63 +0.4 758,928 - AO353_03540 0.63 +0.9 758,965 + AO353_03540 0.69 -1.2 759,037 + AO353_03540 0.80 +2.9 759,037 + AO353_03540 0.80 +2.6 759,037 + AO353_03540 0.80 +1.9 759,038 - AO353_03540 0.80 +2.0 759,038 - AO353_03540 0.80 +1.6 759,038 - AO353_03540 0.80 +2.0 759,053 - AO353_03540 0.82 +1.1 759,090 + AO353_03540 0.88 +0.0 759,091 - AO353_03540 0.88 +1.0 759,091 - AO353_03540 0.88 +0.4 759,091 - AO353_03540 0.88 -1.2 759,091 - AO353_03540 0.88 -2.4 759,134 - +2.1 759,167 + +0.0 759,167 + +1.3 759,167 + +0.2 759,168 - -0.4 759,168 - +0.8 759,168 - -1.4 759,189 + +3.2 759,189 + -1.4 759,190 - +3.9 759,190 - -0.1 759,190 - -1.7 759,190 - +0.4 759,219 + +0.8 759,219 + -0.4 759,219 + -0.7 759,219 + +2.9 759,220 - -1.8 759,220 - +1.2 759,220 - -2.4 759,220 - -1.7 759,319 + +0.1 759,320 - -1.2 759,320 - +1.9 759,338 + +2.0 759,338 + -1.7 759,338 + +0.5 759,338 + -0.7 759,338 + +1.6 759,338 + -0.7 759,338 + -0.7 759,338 + +1.6 759,338 + +2.4 759,338 + -0.8 759,339 - +0.2 759,339 - +0.0 759,339 - -2.3 759,339 - +1.6 759,339 - +1.5 759,339 - -2.3 759,339 - +0.6 759,339 - +1.1 759,339 - -1.0 759,339 - +0.4 759,339 - +0.2 759,339 - -0.9 759,339 - -0.5 759,339 - +0.3 759,339 - +0.6 759,339 - +0.3 759,339 - -1.0 759,381 + +0.6 759,432 + AO353_03545 0.11 +0.5 759,451 + AO353_03545 0.14 +3.2 759,451 + AO353_03545 0.14 -1.2 759,452 - AO353_03545 0.14 -1.7 759,452 - AO353_03545 0.14 -1.6 759,467 + AO353_03545 0.16 +0.0 759,467 + AO353_03545 0.16 +0.0 759,468 - AO353_03545 0.16 -1.4 759,468 - AO353_03545 0.16 -2.5 759,468 - AO353_03545 0.16 -0.0 759,500 + AO353_03545 0.20 +0.9 759,501 - AO353_03545 0.20 -1.8
Or see this region's nucleotide sequence