Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03370

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03365 and AO353_03370 are separated by 72 nucleotidesAO353_03370 and AO353_03375 are separated by 296 nucleotides AO353_03365: AO353_03365 - transcriptional regulator, at 716,070 to 716,939 _03365 AO353_03370: AO353_03370 - aldose epimerase, at 717,012 to 717,866 _03370 AO353_03375: AO353_03375 - porin, at 718,163 to 719,509 _03375 Position (kb) 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 716.050 kb on - strandat 716.058 kb on + strandat 716.058 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.067 kb on + strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.068 kb on - strandat 716.189 kb on + strand, within AO353_03365at 716.190 kb on - strand, within AO353_03365at 716.319 kb on + strand, within AO353_03365at 716.319 kb on + strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.320 kb on - strand, within AO353_03365at 716.361 kb on + strand, within AO353_03365at 716.361 kb on + strand, within AO353_03365at 716.361 kb on + strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.362 kb on - strand, within AO353_03365at 716.631 kb on + strand, within AO353_03365at 716.632 kb on - strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.781 kb on + strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strandat 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 716.782 kb on - strand, within AO353_03365at 717.013 kb on + strandat 717.013 kb on + strandat 717.014 kb on - strandat 717.100 kb on - strand, within AO353_03370at 717.234 kb on + strand, within AO353_03370at 717.234 kb on + strand, within AO353_03370at 717.234 kb on + strand, within AO353_03370at 717.235 kb on - strand, within AO353_03370at 717.235 kb on - strand, within AO353_03370at 717.326 kb on - strand, within AO353_03370at 717.326 kb on - strand, within AO353_03370at 717.385 kb on + strand, within AO353_03370at 717.385 kb on + strand, within AO353_03370at 717.448 kb on - strand, within AO353_03370at 717.448 kb on - strand, within AO353_03370at 717.455 kb on + strand, within AO353_03370at 717.850 kb on - strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.894 kb on + strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.895 kb on - strandat 717.995 kb on + strandat 718.007 kb on - strandat 718.007 kb on - strandat 718.150 kb on + strandat 718.165 kb on - strandat 718.165 kb on - strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.239 kb on + strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.240 kb on - strandat 718.249 kb on + strandat 718.250 kb on - strandat 718.250 kb on - strandat 718.287 kb on + strandat 718.287 kb on + strandat 718.299 kb on + strand, within AO353_03375at 718.299 kb on + strand, within AO353_03375at 718.299 kb on + strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.300 kb on - strand, within AO353_03375at 718.306 kb on - strand, within AO353_03375at 718.306 kb on - strand, within AO353_03375at 718.306 kb on - strand, within AO353_03375at 718.306 kb on - strand, within AO353_03375at 718.306 kb on - strand, within AO353_03375at 718.306 kb on - strand, within AO353_03375at 718.344 kb on + strand, within AO353_03375at 718.467 kb on + strand, within AO353_03375at 718.467 kb on + strand, within AO353_03375at 718.467 kb on + strand, within AO353_03375at 718.468 kb on - strand, within AO353_03375at 718.468 kb on - strand, within AO353_03375at 718.468 kb on - strand, within AO353_03375at 718.468 kb on - strand, within AO353_03375at 718.468 kb on - strand, within AO353_03375at 718.488 kb on + strand, within AO353_03375at 718.488 kb on + strand, within AO353_03375at 718.488 kb on + strand, within AO353_03375at 718.488 kb on + strand, within AO353_03375at 718.488 kb on + strand, within AO353_03375at 718.488 kb on + strand, within AO353_03375at 718.489 kb on - strand, within AO353_03375at 718.489 kb on - strand, within AO353_03375at 718.489 kb on - strand, within AO353_03375at 718.489 kb on - strand, within AO353_03375at 718.489 kb on - strand, within AO353_03375at 718.489 kb on - strand, within AO353_03375at 718.489 kb on - strand, within AO353_03375at 718.673 kb on - strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.704 kb on + strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.705 kb on - strand, within AO353_03375at 718.720 kb on - strand, within AO353_03375at 718.720 kb on - strand, within AO353_03375at 718.845 kb on + strand, within AO353_03375at 718.845 kb on + strand, within AO353_03375at 718.845 kb on + strand, within AO353_03375at 718.846 kb on - strand, within AO353_03375at 718.846 kb on - strand, within AO353_03375at 718.846 kb on - strand, within AO353_03375at 718.863 kb on + strand, within AO353_03375at 718.863 kb on + strand, within AO353_03375at 718.863 kb on + strand, within AO353_03375at 718.863 kb on + strand, within AO353_03375at 718.863 kb on + strand, within AO353_03375at 718.863 kb on + strand, within AO353_03375at 718.863 kb on + strand, within AO353_03375at 718.864 kb on - strand, within AO353_03375at 718.864 kb on - strand, within AO353_03375at 718.864 kb on - strand, within AO353_03375at 718.864 kb on - strand, within AO353_03375

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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716,050 - +0.4
716,058 + -0.7
716,058 + -1.0
716,067 + -1.9
716,067 + +1.6
716,067 + +2.4
716,067 + +0.3
716,067 + +0.3
716,067 + -0.5
716,067 + +1.4
716,067 + -1.7
716,067 + -1.5
716,067 + +0.4
716,067 + -0.3
716,067 + -0.1
716,067 + -3.2
716,067 + +1.4
716,068 - +2.6
716,068 - +2.5
716,068 - +0.6
716,068 - -1.0
716,068 - +3.9
716,068 - -0.7
716,189 + AO353_03365 0.14 -0.8
716,190 - AO353_03365 0.14 -1.5
716,319 + AO353_03365 0.29 +3.0
716,319 + AO353_03365 0.29 +0.5
716,320 - AO353_03365 0.29 -1.0
716,320 - AO353_03365 0.29 +0.5
716,320 - AO353_03365 0.29 +0.6
716,320 - AO353_03365 0.29 -1.2
716,320 - AO353_03365 0.29 +2.9
716,320 - AO353_03365 0.29 +2.0
716,320 - AO353_03365 0.29 -1.2
716,361 + AO353_03365 0.33 -1.5
716,361 + AO353_03365 0.33 +0.3
716,361 + AO353_03365 0.33 -1.0
716,362 - AO353_03365 0.34 -0.9
716,362 - AO353_03365 0.34 -0.6
716,362 - AO353_03365 0.34 -0.3
716,362 - AO353_03365 0.34 +0.0
716,362 - AO353_03365 0.34 +2.7
716,362 - AO353_03365 0.34 -0.7
716,362 - AO353_03365 0.34 -0.7
716,631 + AO353_03365 0.64 +2.8
716,632 - AO353_03365 0.65 +1.0
716,781 + AO353_03365 0.82 +0.5
716,781 + AO353_03365 0.82 +1.1
716,781 + AO353_03365 0.82 +1.0
716,781 + AO353_03365 0.82 +0.9
716,781 + AO353_03365 0.82 +2.2
716,781 + AO353_03365 0.82 -0.7
716,781 + AO353_03365 0.82 -0.7
716,781 + AO353_03365 0.82 -1.4
716,781 + AO353_03365 0.82 +0.6
716,781 + AO353_03365 0.82 +1.1
716,781 + AO353_03365 0.82 -1.5
716,781 + AO353_03365 0.82 -2.5
716,781 + AO353_03365 0.82 -1.6
716,781 + AO353_03365 0.82 +0.2
716,781 + AO353_03365 0.82 -1.5
716,781 + AO353_03365 0.82 +1.4
716,781 + AO353_03365 0.82 +2.3
716,782 - AO353_03365 0.82 -1.5
716,782 - AO353_03365 0.82 +0.5
716,782 - +2.6
716,782 - AO353_03365 0.82 +2.5
716,782 - AO353_03365 0.82 +0.6
716,782 - AO353_03365 0.82 +1.0
716,782 - AO353_03365 0.82 +1.3
716,782 - AO353_03365 0.82 +0.1
716,782 - AO353_03365 0.82 +0.4
716,782 - AO353_03365 0.82 +1.6
716,782 - AO353_03365 0.82 +0.8
716,782 - AO353_03365 0.82 +3.6
716,782 - AO353_03365 0.82 -1.7
716,782 - AO353_03365 0.82 +0.2
716,782 - AO353_03365 0.82 +0.5
717,013 + -2.0
717,013 + -1.2
717,014 - +0.9
717,100 - AO353_03370 0.10 -1.2
717,234 + AO353_03370 0.26 -1.8
717,234 + AO353_03370 0.26 -2.3
717,234 + AO353_03370 0.26 -0.7
717,235 - AO353_03370 0.26 +0.4
717,235 - AO353_03370 0.26 -1.0
717,326 - AO353_03370 0.37 -2.6
717,326 - AO353_03370 0.37 +0.2
717,385 + AO353_03370 0.44 +0.5
717,385 + AO353_03370 0.44 -2.2
717,448 - AO353_03370 0.51 -1.4
717,448 - AO353_03370 0.51 +0.4
717,455 + AO353_03370 0.52 -2.0
717,850 - +0.5
717,894 + -0.7
717,894 + -2.6
717,894 + +1.4
717,894 + +0.6
717,894 + -2.1
717,894 + -2.1
717,894 + +0.5
717,894 + -2.3
717,894 + +0.5
717,894 + +2.0
717,894 + -0.3
717,894 + -1.8
717,894 + -2.9
717,894 + -2.3
717,894 + +1.5
717,895 - -1.5
717,895 - -0.2
717,895 - -1.3
717,895 - +1.6
717,895 - -1.0
717,895 - -1.2
717,895 - +0.8
717,895 - +0.3
717,895 - -0.7
717,995 + +0.4
718,007 - -1.5
718,007 - +0.9
718,150 + -0.3
718,165 - -1.5
718,165 - +1.3
718,239 + -2.9
718,239 + +0.8
718,239 + +0.5
718,239 + -0.1
718,239 + -0.4
718,239 + +1.3
718,239 + -1.0
718,239 + +0.1
718,239 + -1.5
718,239 + +1.3
718,239 + -0.2
718,239 + +1.3
718,239 + -2.0
718,239 + -0.7
718,239 + -0.2
718,240 - +0.0
718,240 - -0.5
718,240 - -0.5
718,240 - -1.1
718,240 - +1.8
718,240 - -1.5
718,240 - -1.7
718,240 - +1.8
718,240 - +1.0
718,240 - -0.4
718,240 - +0.8
718,240 - -2.1
718,249 + +0.4
718,250 - -2.0
718,250 - +0.3
718,287 + +0.6
718,287 + -2.2
718,299 + AO353_03375 0.10 -0.5
718,299 + AO353_03375 0.10 -1.4
718,299 + AO353_03375 0.10 -0.0
718,300 - AO353_03375 0.10 +0.5
718,300 - AO353_03375 0.10 +0.6
718,300 - AO353_03375 0.10 +2.9
718,300 - AO353_03375 0.10 +1.1
718,300 - AO353_03375 0.10 -0.2
718,300 - AO353_03375 0.10 -3.3
718,300 - AO353_03375 0.10 +2.8
718,300 - AO353_03375 0.10 -0.4
718,306 - AO353_03375 0.11 -1.2
718,306 - AO353_03375 0.11 +0.6
718,306 - AO353_03375 0.11 -0.2
718,306 - AO353_03375 0.11 +1.6
718,306 - AO353_03375 0.11 +0.2
718,306 - AO353_03375 0.11 -1.5
718,344 + AO353_03375 0.13 +0.6
718,467 + AO353_03375 0.23 -0.4
718,467 + AO353_03375 0.23 -0.1
718,467 + AO353_03375 0.23 -0.4
718,468 - AO353_03375 0.23 -0.1
718,468 - AO353_03375 0.23 -0.7
718,468 - AO353_03375 0.23 +1.1
718,468 - AO353_03375 0.23 -2.6
718,468 - AO353_03375 0.23 +1.9
718,488 + AO353_03375 0.24 +0.4
718,488 + AO353_03375 0.24 +0.0
718,488 + AO353_03375 0.24 -0.1
718,488 + AO353_03375 0.24 -1.5
718,488 + AO353_03375 0.24 +0.6
718,488 + AO353_03375 0.24 +1.8
718,489 - AO353_03375 0.24 +0.8
718,489 - AO353_03375 0.24 -0.2
718,489 - AO353_03375 0.24 +2.6
718,489 - AO353_03375 0.24 +1.5
718,489 - AO353_03375 0.24 -0.4
718,489 - AO353_03375 0.24 -0.1
718,489 - AO353_03375 0.24 +1.6
718,673 - AO353_03375 0.38 -0.2
718,704 + AO353_03375 0.40 +1.0
718,704 + AO353_03375 0.40 -2.4
718,704 + AO353_03375 0.40 +0.4
718,704 + AO353_03375 0.40 -2.7
718,704 + AO353_03375 0.40 -2.2
718,704 + AO353_03375 0.40 -0.4
718,704 + AO353_03375 0.40 -1.0
718,704 + AO353_03375 0.40 -0.6
718,704 + AO353_03375 0.40 -1.6
718,705 - AO353_03375 0.40 -0.4
718,705 - AO353_03375 0.40 -1.2
718,705 - AO353_03375 0.40 +0.0
718,705 - AO353_03375 0.40 +0.8
718,705 - AO353_03375 0.40 -2.6
718,705 - AO353_03375 0.40 -0.7
718,705 - AO353_03375 0.40 -2.3
718,705 - AO353_03375 0.40 +0.6
718,720 - AO353_03375 0.41 -0.9
718,720 - AO353_03375 0.41 -0.5
718,845 + AO353_03375 0.51 -0.3
718,845 + AO353_03375 0.51 +3.4
718,845 + AO353_03375 0.51 +0.3
718,846 - AO353_03375 0.51 -1.2
718,846 - AO353_03375 0.51 -0.6
718,846 - AO353_03375 0.51 -0.4
718,863 + AO353_03375 0.52 +1.3
718,863 + AO353_03375 0.52 +2.0
718,863 + AO353_03375 0.52 -0.4
718,863 + AO353_03375 0.52 +1.4
718,863 + AO353_03375 0.52 -0.3
718,863 + AO353_03375 0.52 -0.0
718,863 + AO353_03375 0.52 -1.0
718,864 - AO353_03375 0.52 +1.6
718,864 - AO353_03375 0.52 -0.3
718,864 - AO353_03375 0.52 -0.2
718,864 - AO353_03375 0.52 -0.2

Or see this region's nucleotide sequence