Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02335

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02330 and AO353_02335 are separated by 121 nucleotidesAO353_02335 and AO353_02340 are separated by 51 nucleotides AO353_02330: AO353_02330 - allantoicase, at 494,981 to 495,976 _02330 AO353_02335: AO353_02335 - ureidoglycolate hydrolase, at 496,098 to 496,601 _02335 AO353_02340: AO353_02340 - hypothetical protein, at 496,653 to 497,960 _02340 Position (kb) 496 497Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 495.189 kb on - strand, within AO353_02330at 495.270 kb on - strand, within AO353_02330at 495.435 kb on - strand, within AO353_02330at 495.467 kb on + strand, within AO353_02330at 495.468 kb on - strand, within AO353_02330at 495.616 kb on + strand, within AO353_02330at 495.617 kb on - strand, within AO353_02330at 495.955 kb on - strandat 495.955 kb on - strandat 495.974 kb on + strandat 495.974 kb on + strandat 495.975 kb on - strandat 495.975 kb on - strandat 495.975 kb on - strandat 495.975 kb on - strandat 495.975 kb on - strandat 495.975 kb on - strandat 495.975 kb on - strandat 495.988 kb on + strandat 495.988 kb on + strandat 495.988 kb on + strandat 495.988 kb on + strandat 495.988 kb on + strandat 495.988 kb on + strandat 495.988 kb on + strandat 495.989 kb on - strandat 495.989 kb on - strandat 495.989 kb on - strandat 495.989 kb on - strandat 495.989 kb on - strandat 495.989 kb on - strandat 495.989 kb on - strandat 496.019 kb on + strandat 496.050 kb on + strandat 496.050 kb on + strandat 496.050 kb on + strandat 496.050 kb on + strandat 496.050 kb on + strandat 496.050 kb on + strandat 496.051 kb on - strandat 496.051 kb on - strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.083 kb on + strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.084 kb on - strandat 496.405 kb on + strand, within AO353_02335at 496.406 kb on - strand, within AO353_02335at 496.451 kb on + strand, within AO353_02335at 496.451 kb on + strand, within AO353_02335at 496.451 kb on + strand, within AO353_02335at 496.451 kb on + strand, within AO353_02335at 496.451 kb on + strand, within AO353_02335at 496.452 kb on - strand, within AO353_02335at 496.452 kb on - strand, within AO353_02335at 496.452 kb on - strand, within AO353_02335at 496.452 kb on - strand, within AO353_02335at 496.455 kb on + strand, within AO353_02335at 496.455 kb on + strand, within AO353_02335at 496.455 kb on + strand, within AO353_02335at 496.455 kb on + strand, within AO353_02335at 496.456 kb on - strand, within AO353_02335at 496.541 kb on + strand, within AO353_02335at 496.541 kb on + strand, within AO353_02335at 496.542 kb on - strand, within AO353_02335at 496.542 kb on - strand, within AO353_02335at 496.542 kb on - strand, within AO353_02335at 496.542 kb on - strand, within AO353_02335at 496.542 kb on - strand, within AO353_02335at 496.542 kb on - strand, within AO353_02335at 496.599 kb on + strandat 496.599 kb on + strandat 496.599 kb on + strandat 496.599 kb on + strandat 496.600 kb on - strandat 496.600 kb on - strandat 496.600 kb on - strandat 496.645 kb on + strandat 496.646 kb on - strandat 496.740 kb on + strandat 496.740 kb on + strandat 496.740 kb on + strandat 496.740 kb on + strandat 496.741 kb on - strandat 496.741 kb on - strandat 496.741 kb on - strandat 496.741 kb on - strandat 496.741 kb on - strandat 496.830 kb on + strand, within AO353_02340at 496.830 kb on + strand, within AO353_02340at 496.831 kb on - strand, within AO353_02340at 496.831 kb on - strand, within AO353_02340at 496.831 kb on - strand, within AO353_02340at 496.831 kb on - strand, within AO353_02340at 496.831 kb on - strand, within AO353_02340at 496.845 kb on + strand, within AO353_02340at 496.846 kb on - strand, within AO353_02340at 496.846 kb on - strand, within AO353_02340at 496.902 kb on + strand, within AO353_02340at 496.902 kb on + strand, within AO353_02340at 496.902 kb on + strand, within AO353_02340at 496.902 kb on + strand, within AO353_02340at 496.903 kb on - strand, within AO353_02340at 496.903 kb on - strand, within AO353_02340at 496.903 kb on - strand, within AO353_02340at 496.903 kb on - strand, within AO353_02340at 496.903 kb on - strand, within AO353_02340at 496.903 kb on - strand, within AO353_02340at 496.947 kb on + strand, within AO353_02340at 496.947 kb on + strand, within AO353_02340at 496.948 kb on - strand, within AO353_02340at 496.965 kb on + strand, within AO353_02340at 496.965 kb on + strand, within AO353_02340at 496.965 kb on + strand, within AO353_02340at 496.965 kb on + strand, within AO353_02340at 496.966 kb on - strand, within AO353_02340at 497.050 kb on - strand, within AO353_02340at 497.078 kb on + strand, within AO353_02340at 497.079 kb on - strand, within AO353_02340at 497.133 kb on + strand, within AO353_02340at 497.133 kb on + strand, within AO353_02340at 497.169 kb on + strand, within AO353_02340at 497.170 kb on - strand, within AO353_02340at 497.170 kb on - strand, within AO353_02340at 497.211 kb on - strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.382 kb on + strand, within AO353_02340at 497.382 kb on + strand, within AO353_02340at 497.383 kb on - strand, within AO353_02340at 497.383 kb on - strand, within AO353_02340at 497.383 kb on - strand, within AO353_02340at 497.395 kb on - strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.449 kb on - strand, within AO353_02340at 497.526 kb on + strand, within AO353_02340at 497.526 kb on + strand, within AO353_02340at 497.527 kb on - strand, within AO353_02340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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495,189 - AO353_02330 0.21 +0.9
495,270 - AO353_02330 0.29 -2.6
495,435 - AO353_02330 0.46 -1.4
495,467 + AO353_02330 0.49 +0.7
495,468 - AO353_02330 0.49 -2.3
495,616 + AO353_02330 0.64 +2.0
495,617 - AO353_02330 0.64 +2.0
495,955 - +0.5
495,955 - -1.5
495,974 + -0.2
495,974 + +1.6
495,975 - -1.4
495,975 - +1.2
495,975 - +0.5
495,975 - -0.7
495,975 - +0.2
495,975 - +2.4
495,975 - +0.6
495,988 + +1.4
495,988 + +1.5
495,988 + -1.7
495,988 + +0.5
495,988 + +0.9
495,988 + +1.0
495,988 + +0.2
495,989 - -0.9
495,989 - +1.6
495,989 - -0.2
495,989 - -0.4
495,989 - -0.7
495,989 - +0.8
495,989 - +1.6
496,019 + -2.3
496,050 + -0.7
496,050 + +1.4
496,050 + -0.0
496,050 + +2.7
496,050 + +0.6
496,050 + +2.6
496,051 - +0.6
496,051 - +1.2
496,083 + +0.1
496,083 + +1.2
496,083 + +0.8
496,083 + +0.6
496,083 + +0.9
496,083 + -1.2
496,083 + +2.3
496,083 + +2.2
496,083 + +1.5
496,083 + -0.7
496,084 - +0.4
496,084 - +0.6
496,084 - -0.5
496,084 - -2.7
496,084 - +0.8
496,084 - +0.6
496,084 - -1.2
496,084 - +0.9
496,084 - +1.1
496,084 - +1.1
496,084 - +0.1
496,084 - -0.3
496,084 - -0.8
496,405 + AO353_02335 0.61 -2.1
496,406 - AO353_02335 0.61 +2.0
496,451 + AO353_02335 0.70 +0.4
496,451 + AO353_02335 0.70 +1.2
496,451 + AO353_02335 0.70 +0.0
496,451 + AO353_02335 0.70 -1.2
496,451 + AO353_02335 0.70 +0.6
496,452 - AO353_02335 0.70 -2.2
496,452 - AO353_02335 0.70 -1.5
496,452 - AO353_02335 0.70 -1.5
496,452 - AO353_02335 0.70 +0.6
496,455 + AO353_02335 0.71 +1.2
496,455 + AO353_02335 0.71 +1.8
496,455 + AO353_02335 0.71 +3.6
496,455 + AO353_02335 0.71 +0.6
496,456 - AO353_02335 0.71 -0.8
496,541 + AO353_02335 0.88 +2.0
496,541 + AO353_02335 0.88 +4.2
496,542 - AO353_02335 0.88 +0.8
496,542 - AO353_02335 0.88 -0.2
496,542 - AO353_02335 0.88 +2.0
496,542 - AO353_02335 0.88 -0.9
496,542 - AO353_02335 0.88 +2.1
496,542 - AO353_02335 0.88 -0.4
496,599 + +0.6
496,599 + +0.6
496,599 + +1.2
496,599 + -0.2
496,600 - +0.6
496,600 - +1.8
496,600 - -0.3
496,645 + +1.2
496,646 - -0.9
496,740 + +1.1
496,740 + +0.5
496,740 + -0.9
496,740 + -1.4
496,741 - +0.9
496,741 - +0.2
496,741 - +0.4
496,741 - +2.1
496,741 - -1.5
496,830 + AO353_02340 0.14 -1.0
496,830 + AO353_02340 0.14 +1.6
496,831 - AO353_02340 0.14 +0.5
496,831 - AO353_02340 0.14 +1.6
496,831 - AO353_02340 0.14 -1.1
496,831 - AO353_02340 0.14 -0.4
496,831 - AO353_02340 0.14 +1.6
496,845 + AO353_02340 0.15 -0.9
496,846 - AO353_02340 0.15 +0.2
496,846 - AO353_02340 0.15 -0.4
496,902 + AO353_02340 0.19 +1.2
496,902 + AO353_02340 0.19 -1.3
496,902 + AO353_02340 0.19 +0.7
496,902 + AO353_02340 0.19 -1.5
496,903 - AO353_02340 0.19 +1.1
496,903 - AO353_02340 0.19 +0.1
496,903 - AO353_02340 0.19 +0.6
496,903 - AO353_02340 0.19 +1.3
496,903 - AO353_02340 0.19 -0.9
496,903 - AO353_02340 0.19 +0.1
496,947 + AO353_02340 0.22 +1.1
496,947 + AO353_02340 0.22 +0.6
496,948 - AO353_02340 0.23 -1.8
496,965 + AO353_02340 0.24 -1.5
496,965 + AO353_02340 0.24 -1.7
496,965 + AO353_02340 0.24 +1.6
496,965 + AO353_02340 0.24 -0.0
496,966 - AO353_02340 0.24 -1.5
497,050 - AO353_02340 0.30 -1.5
497,078 + AO353_02340 0.32 -0.4
497,079 - AO353_02340 0.33 +0.9
497,133 + AO353_02340 0.37 +0.1
497,133 + AO353_02340 0.37 -1.8
497,169 + AO353_02340 0.39 -0.2
497,170 - AO353_02340 0.40 +0.1
497,170 - AO353_02340 0.40 -2.4
497,211 - AO353_02340 0.43 +0.6
497,328 + AO353_02340 0.52 -0.3
497,328 + AO353_02340 0.52 +1.6
497,328 + AO353_02340 0.52 -0.5
497,328 + AO353_02340 0.52 -1.7
497,328 + AO353_02340 0.52 -0.8
497,329 - AO353_02340 0.52 -1.3
497,329 - AO353_02340 0.52 -0.1
497,329 - AO353_02340 0.52 +1.4
497,329 - AO353_02340 0.52 +0.1
497,329 - AO353_02340 0.52 -0.4
497,329 - AO353_02340 0.52 -1.4
497,329 - AO353_02340 0.52 -0.4
497,329 - AO353_02340 0.52 -0.8
497,329 - AO353_02340 0.52 +1.3
497,329 - AO353_02340 0.52 -0.7
497,329 - AO353_02340 0.52 -0.2
497,329 - AO353_02340 0.52 +3.4
497,329 - AO353_02340 0.52 +0.6
497,382 + AO353_02340 0.56 -1.5
497,382 + AO353_02340 0.56 -2.3
497,383 - AO353_02340 0.56 -0.4
497,383 - AO353_02340 0.56 +2.7
497,383 - AO353_02340 0.56 +0.5
497,395 - AO353_02340 0.57 +0.7
497,448 + AO353_02340 0.61 -0.4
497,448 + AO353_02340 0.61 -0.7
497,448 + AO353_02340 0.61 +0.2
497,448 + AO353_02340 0.61 +0.6
497,448 + AO353_02340 0.61 +0.1
497,449 - AO353_02340 0.61 +1.1
497,526 + AO353_02340 0.67 -0.9
497,526 + AO353_02340 0.67 -0.9
497,527 - AO353_02340 0.67 +0.2

Or see this region's nucleotide sequence