Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01145

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01140 and AO353_01145 are separated by 142 nucleotidesAO353_01145 and AO353_01150 are separated by 108 nucleotidesAO353_01150 and AO353_01155 are separated by 107 nucleotides AO353_01140: AO353_01140 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 251,715 to 252,437 _01140 AO353_01145: AO353_01145 - magnesium transporter, at 252,580 to 253,551 _01145 AO353_01150: AO353_01150 - amidotransferase, at 253,660 to 254,388 _01150 AO353_01155: AO353_01155 - 3-hydroxyacyl-CoA dehydrogenase, at 254,496 to 256,640 _01155 Position (kb) 252 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 251.583 kb on + strandat 251.583 kb on + strandat 251.583 kb on + strandat 251.622 kb on - strandat 251.622 kb on - strandat 251.622 kb on - strandat 251.639 kb on + strandat 251.639 kb on + strandat 251.639 kb on + strandat 251.639 kb on + strandat 251.640 kb on - strandat 251.640 kb on - strandat 251.645 kb on + strandat 251.646 kb on - strandat 251.646 kb on - strandat 251.646 kb on - strandat 251.647 kb on + strandat 251.648 kb on - strandat 251.648 kb on - strandat 251.648 kb on - strandat 251.679 kb on + strandat 251.680 kb on - strandat 251.680 kb on - strandat 251.712 kb on + strandat 251.712 kb on + strandat 251.712 kb on + strandat 251.712 kb on + strandat 251.712 kb on + strandat 251.712 kb on + strandat 251.712 kb on + strandat 251.712 kb on + strandat 251.713 kb on - strandat 251.713 kb on - strandat 251.713 kb on - strandat 251.721 kb on + strandat 251.721 kb on + strandat 251.722 kb on - strandat 251.738 kb on - strandat 251.738 kb on - strandat 251.738 kb on - strandat 251.839 kb on - strand, within AO353_01140at 251.839 kb on - strand, within AO353_01140at 251.839 kb on - strand, within AO353_01140at 251.839 kb on - strand, within AO353_01140at 251.858 kb on + strand, within AO353_01140at 251.858 kb on + strand, within AO353_01140at 251.859 kb on - strand, within AO353_01140at 251.859 kb on - strand, within AO353_01140at 251.859 kb on - strand, within AO353_01140at 251.859 kb on - strand, within AO353_01140at 251.923 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.946 kb on + strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 251.947 kb on - strand, within AO353_01140at 252.261 kb on + strand, within AO353_01140at 252.261 kb on + strand, within AO353_01140at 252.261 kb on + strand, within AO353_01140at 252.261 kb on + strand, within AO353_01140at 252.261 kb on + strand, within AO353_01140at 252.262 kb on - strand, within AO353_01140at 252.262 kb on - strand, within AO353_01140at 252.262 kb on - strand, within AO353_01140at 252.262 kb on - strand, within AO353_01140at 252.262 kb on - strand, within AO353_01140at 252.272 kb on + strand, within AO353_01140at 252.272 kb on + strand, within AO353_01140at 252.273 kb on - strand, within AO353_01140at 252.273 kb on - strand, within AO353_01140at 252.273 kb on - strand, within AO353_01140at 252.273 kb on - strand, within AO353_01140at 252.332 kb on + strand, within AO353_01140at 252.333 kb on - strand, within AO353_01140at 252.505 kb on + strandat 252.505 kb on + strandat 252.505 kb on + strandat 252.505 kb on + strandat 252.505 kb on + strandat 252.505 kb on + strandat 252.506 kb on - strandat 252.506 kb on - strandat 252.572 kb on + strandat 252.573 kb on - strandat 252.573 kb on - strandat 252.579 kb on + strandat 252.580 kb on - strandat 252.580 kb on - strandat 252.585 kb on + strandat 252.585 kb on + strandat 252.607 kb on + strandat 252.607 kb on + strandat 252.607 kb on + strandat 252.608 kb on - strandat 252.618 kb on + strandat 252.683 kb on + strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.684 kb on - strand, within AO353_01145at 252.833 kb on - strand, within AO353_01145at 252.833 kb on - strand, within AO353_01145at 252.833 kb on - strand, within AO353_01145at 252.898 kb on + strand, within AO353_01145at 252.898 kb on + strand, within AO353_01145at 252.898 kb on + strand, within AO353_01145at 252.899 kb on - strand, within AO353_01145at 252.934 kb on + strand, within AO353_01145at 253.004 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.034 kb on - strand, within AO353_01145at 253.243 kb on + strand, within AO353_01145at 253.243 kb on + strand, within AO353_01145at 253.298 kb on + strand, within AO353_01145at 253.298 kb on + strandat 253.298 kb on + strand, within AO353_01145at 253.305 kb on + strand, within AO353_01145at 253.306 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.335 kb on - strand, within AO353_01145at 253.426 kb on + strand, within AO353_01145at 253.426 kb on + strand, within AO353_01145at 253.427 kb on - strand, within AO353_01145at 253.469 kb on - strandat 253.475 kb on - strandat 253.494 kb on + strandat 253.495 kb on - strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.548 kb on - strandat 253.548 kb on - strandat 253.550 kb on - strandat 253.550 kb on - strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.617 kb on + strandat 253.617 kb on + strandat 253.617 kb on + strandat 253.618 kb on - strandat 253.618 kb on - strandat 253.618 kb on - strandat 253.661 kb on + strandat 253.763 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.871 kb on + strand, within AO353_01150at 253.872 kb on - strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.142 kb on - strand, within AO353_01150at 254.142 kb on - strand, within AO353_01150at 254.142 kb on - strandat 254.142 kb on - strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.327 kb on + strandat 254.327 kb on + strandat 254.327 kb on + strandat 254.328 kb on - strandat 254.407 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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251,583 + +2.3
251,583 + -2.3
251,583 + +1.2
251,622 - +0.6
251,622 - +0.6
251,622 - -0.4
251,639 + -2.2
251,639 + +2.8
251,639 + -0.4
251,639 + -0.1
251,640 - -0.9
251,640 - -0.8
251,645 + +2.8
251,646 - -0.8
251,646 - -0.0
251,646 - +0.3
251,647 + +1.1
251,648 - +1.6
251,648 - +0.1
251,648 - +0.8
251,679 + -1.2
251,680 - -1.2
251,680 - -1.8
251,712 + -0.8
251,712 + -1.0
251,712 + +1.6
251,712 + -1.2
251,712 + +1.3
251,712 + +1.8
251,712 + -2.2
251,712 + -0.6
251,713 - +0.1
251,713 - +1.1
251,713 - -1.6
251,721 + +2.0
251,721 + -0.4
251,722 - +2.6
251,738 - +0.6
251,738 - +0.2
251,738 - -0.8
251,839 - AO353_01140 0.17 -1.2
251,839 - AO353_01140 0.17 +0.8
251,839 - AO353_01140 0.17 +1.0
251,839 - AO353_01140 0.17 +0.7
251,858 + AO353_01140 0.20 +1.0
251,858 + AO353_01140 0.20 -0.9
251,859 - AO353_01140 0.20 -0.5
251,859 - AO353_01140 0.20 +1.0
251,859 - AO353_01140 0.20 +1.4
251,859 - AO353_01140 0.20 +1.7
251,923 + AO353_01140 0.29 +0.3
251,946 + AO353_01140 0.32 -2.0
251,946 + AO353_01140 0.32 +0.4
251,946 + AO353_01140 0.32 -1.1
251,946 + AO353_01140 0.32 +0.2
251,946 + AO353_01140 0.32 -1.8
251,946 + AO353_01140 0.32 -0.0
251,946 + AO353_01140 0.32 -0.3
251,946 + AO353_01140 0.32 -2.5
251,947 - AO353_01140 0.32 +0.7
251,947 - AO353_01140 0.32 +1.1
251,947 - AO353_01140 0.32 -0.9
251,947 - AO353_01140 0.32 +1.1
251,947 - AO353_01140 0.32 -0.2
251,947 - AO353_01140 0.32 +0.3
251,947 - AO353_01140 0.32 -0.3
251,947 - AO353_01140 0.32 -1.1
251,947 - AO353_01140 0.32 -1.6
251,947 - AO353_01140 0.32 +2.3
251,947 - AO353_01140 0.32 +0.1
251,947 - AO353_01140 0.32 +0.8
252,261 + AO353_01140 0.76 -0.3
252,261 + AO353_01140 0.76 -1.3
252,261 + AO353_01140 0.76 -1.8
252,261 + AO353_01140 0.76 -1.6
252,261 + AO353_01140 0.76 -1.2
252,262 - AO353_01140 0.76 +1.8
252,262 - AO353_01140 0.76 +0.4
252,262 - AO353_01140 0.76 +3.3
252,262 - AO353_01140 0.76 -1.1
252,262 - AO353_01140 0.76 +0.3
252,272 + AO353_01140 0.77 +0.3
252,272 + AO353_01140 0.77 +1.4
252,273 - AO353_01140 0.77 +1.9
252,273 - AO353_01140 0.77 -0.3
252,273 - AO353_01140 0.77 +0.3
252,273 - AO353_01140 0.77 -1.1
252,332 + AO353_01140 0.85 +0.7
252,333 - AO353_01140 0.85 -1.4
252,505 + -0.3
252,505 + +1.6
252,505 + +1.0
252,505 + +0.6
252,505 + -0.7
252,505 + -1.4
252,506 - -1.0
252,506 - +0.1
252,572 + +1.6
252,573 - -0.1
252,573 - +1.8
252,579 + +1.6
252,580 - -0.2
252,580 - -0.0
252,585 + -2.2
252,585 + -0.6
252,607 + -0.9
252,607 + +0.3
252,607 + +2.9
252,608 - +1.9
252,618 + +0.2
252,683 + AO353_01145 0.11 -0.6
252,684 - AO353_01145 0.11 +2.6
252,684 - AO353_01145 0.11 +1.2
252,684 - AO353_01145 0.11 +2.8
252,684 - AO353_01145 0.11 -0.8
252,684 - AO353_01145 0.11 -0.8
252,833 - AO353_01145 0.26 -0.4
252,833 - AO353_01145 0.26 -1.4
252,833 - AO353_01145 0.26 +0.1
252,898 + AO353_01145 0.33 -1.8
252,898 + AO353_01145 0.33 +2.1
252,898 + AO353_01145 0.33 -1.4
252,899 - AO353_01145 0.33 -0.8
252,934 + AO353_01145 0.36 -0.2
253,004 - AO353_01145 0.44 +0.6
253,034 - AO353_01145 0.47 +1.4
253,034 - AO353_01145 0.47 -1.0
253,034 - AO353_01145 0.47 -1.0
253,034 - AO353_01145 0.47 +0.4
253,243 + AO353_01145 0.68 -0.8
253,243 + AO353_01145 0.68 -1.9
253,298 + AO353_01145 0.74 -0.2
253,298 + -0.8
253,298 + AO353_01145 0.74 -1.6
253,305 + AO353_01145 0.75 -2.6
253,306 - AO353_01145 0.75 +0.4
253,335 - AO353_01145 0.78 +0.3
253,335 - AO353_01145 0.78 -2.3
253,335 - AO353_01145 0.78 -0.2
253,335 - AO353_01145 0.78 +1.6
253,426 + AO353_01145 0.87 -0.2
253,426 + AO353_01145 0.87 -1.2
253,427 - AO353_01145 0.87 +1.6
253,469 - -2.0
253,475 - -1.9
253,494 + +0.4
253,495 - -1.9
253,547 + +0.1
253,547 + -0.2
253,547 + +1.0
253,547 + +0.9
253,547 + -1.2
253,548 - -1.8
253,548 - -0.2
253,550 - -0.4
253,550 - +0.2
253,611 + -1.9
253,611 + -1.4
253,611 + +0.1
253,611 + +0.1
253,611 + +3.4
253,617 + +0.6
253,617 + -3.1
253,617 + +1.6
253,618 - +1.6
253,618 - +0.6
253,618 - +0.6
253,661 + -0.6
253,763 + AO353_01150 0.14 -1.0
253,814 + AO353_01150 0.21 -1.0
253,814 + AO353_01150 0.21 +0.3
253,814 + AO353_01150 0.21 -2.1
253,871 + AO353_01150 0.29 +1.2
253,872 - AO353_01150 0.29 +0.3
254,012 + AO353_01150 0.48 -2.8
254,012 + AO353_01150 0.48 -0.8
254,012 + AO353_01150 0.48 -1.8
254,012 + AO353_01150 0.48 -1.7
254,012 + AO353_01150 0.48 -1.0
254,012 + AO353_01150 0.48 +1.7
254,012 + AO353_01150 0.48 -1.0
254,013 - AO353_01150 0.48 -0.3
254,013 - AO353_01150 0.48 -0.7
254,013 - AO353_01150 0.48 +0.7
254,141 + AO353_01150 0.66 -1.8
254,141 + AO353_01150 0.66 +1.2
254,141 + AO353_01150 0.66 +1.2
254,141 + AO353_01150 0.66 +0.6
254,142 - AO353_01150 0.66 -0.1
254,142 - AO353_01150 0.66 -0.4
254,142 - +0.6
254,142 - AO353_01150 0.66 +2.6
254,258 + AO353_01150 0.82 +0.8
254,258 + AO353_01150 0.82 +1.7
254,258 + AO353_01150 0.82 +1.6
254,258 + AO353_01150 0.82 -1.6
254,258 + AO353_01150 0.82 -0.2
254,259 - AO353_01150 0.82 -0.7
254,259 - AO353_01150 0.82 +2.1
254,259 - AO353_01150 0.82 +1.7
254,259 - AO353_01150 0.82 +0.6
254,259 - AO353_01150 0.82 -1.0
254,327 + -1.0
254,327 + -0.9
254,327 + +0.8
254,328 - +0.5
254,407 + -1.8

Or see this region's nucleotide sequence