Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26695 and AO353_26700 are separated by 188 nucleotides AO353_26700 and AO353_26705 are separated by 99 nucleotides AO353_26705 and AO353_26710 are separated by 241 nucleotides
AO353_26695: AO353_26695 - MFS transporter, at 5,843,601 to 5,844,905
_26695
AO353_26700: AO353_26700 - peptidylprolyl isomerase, at 5,845,094 to 5,845,432
_26700
AO353_26705: AO353_26705 - hypothetical protein, at 5,845,532 to 5,845,840
_26705
AO353_26710: AO353_26710 - citrate-proton symporter, at 5,846,082 to 5,847,386
_26710
Position (kb) 5845
5846 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5844.731 kb on + strand, within AO353_26695 at 5844.744 kb on + strand, within AO353_26695 at 5844.745 kb on - strand, within AO353_26695 at 5844.745 kb on - strand, within AO353_26695 at 5844.870 kb on + strand at 5844.870 kb on + strand at 5844.870 kb on + strand at 5844.871 kb on - strand at 5844.871 kb on - strand at 5844.871 kb on - strand at 5844.882 kb on + strand at 5844.882 kb on + strand at 5844.883 kb on - strand at 5844.883 kb on - strand at 5844.938 kb on - strand at 5844.938 kb on - strand at 5844.938 kb on - strand at 5844.959 kb on + strand at 5845.068 kb on + strand at 5845.069 kb on - strand at 5845.086 kb on - strand at 5845.122 kb on - strand at 5845.182 kb on + strand, within AO353_26700 at 5845.182 kb on + strand, within AO353_26700 at 5845.328 kb on - strand, within AO353_26700 at 5845.360 kb on + strand at 5845.361 kb on - strand, within AO353_26700 at 5845.434 kb on - strand at 5845.459 kb on - strand at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.590 kb on + strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.591 kb on - strand, within AO353_26705 at 5845.607 kb on + strand, within AO353_26705 at 5845.607 kb on + strand, within AO353_26705 at 5845.634 kb on - strand, within AO353_26705 at 5845.684 kb on - strand, within AO353_26705 at 5845.684 kb on - strand, within AO353_26705 at 5845.684 kb on - strand, within AO353_26705 at 5845.684 kb on - strand, within AO353_26705 at 5845.786 kb on + strand, within AO353_26705 at 5845.786 kb on + strand, within AO353_26705 at 5845.786 kb on + strand, within AO353_26705 at 5845.844 kb on + strand at 5845.844 kb on + strand at 5845.844 kb on + strand at 5845.845 kb on - strand at 5845.845 kb on - strand at 5845.845 kb on - strand at 5845.876 kb on - strand at 5845.922 kb on + strand at 5845.923 kb on - strand at 5845.923 kb on - strand at 5845.923 kb on - strand at 5845.964 kb on + strand at 5845.964 kb on + strand at 5845.981 kb on + strand at 5845.981 kb on + strand at 5845.982 kb on - strand at 5845.982 kb on - strand at 5845.985 kb on + strand at 5845.985 kb on + strand at 5845.986 kb on - strand at 5845.986 kb on - strand at 5845.986 kb on - strand at 5845.993 kb on + strand at 5845.993 kb on + strand at 5845.993 kb on + strand at 5845.993 kb on + strand at 5845.994 kb on - strand at 5845.994 kb on - strand at 5845.994 kb on - strand at 5845.994 kb on - strand at 5845.994 kb on - strand at 5845.994 kb on - strand at 5845.994 kb on - strand at 5845.994 kb on - strand at 5846.029 kb on - strand at 5846.029 kb on - strand at 5846.031 kb on + strand at 5846.031 kb on + strand at 5846.032 kb on - strand at 5846.032 kb on - strand at 5846.032 kb on - strand at 5846.032 kb on - strand at 5846.034 kb on + strand at 5846.034 kb on + strand at 5846.061 kb on + strand at 5846.062 kb on - strand at 5846.090 kb on + strand at 5846.091 kb on - strand at 5846.197 kb on - strand at 5846.205 kb on + strand at 5846.205 kb on + strand at 5846.205 kb on + strand at 5846.205 kb on + strand at 5846.205 kb on + strand at 5846.205 kb on + strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.206 kb on - strand at 5846.207 kb on + strand at 5846.208 kb on - strand at 5846.208 kb on - strand at 5846.322 kb on + strand, within AO353_26710 at 5846.322 kb on + strand, within AO353_26710 at 5846.322 kb on + strand, within AO353_26710 at 5846.322 kb on + strand, within AO353_26710 at 5846.322 kb on + strand, within AO353_26710 at 5846.322 kb on + strand, within AO353_26710 at 5846.322 kb on + strand, within AO353_26710 at 5846.323 kb on - strand, within AO353_26710 at 5846.323 kb on - strand, within AO353_26710 at 5846.323 kb on - strand, within AO353_26710 at 5846.323 kb on - strand, within AO353_26710 at 5846.323 kb on - strand, within AO353_26710 at 5846.508 kb on + strand, within AO353_26710 at 5846.508 kb on + strand, within AO353_26710 at 5846.509 kb on - strand, within AO353_26710 at 5846.697 kb on - strand, within AO353_26710
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 5,844,731 + AO353_26695 0.87 -0.6 5,844,744 + AO353_26695 0.88 +0.4 5,844,745 - AO353_26695 0.88 +0.4 5,844,745 - AO353_26695 0.88 -1.9 5,844,870 + -0.4 5,844,870 + -0.3 5,844,870 + -0.4 5,844,871 - -0.9 5,844,871 - -1.5 5,844,871 - -1.5 5,844,882 + -0.1 5,844,882 + -0.1 5,844,883 - -0.1 5,844,883 - -1.1 5,844,938 - +1.9 5,844,938 - -1.7 5,844,938 - -2.1 5,844,959 + -0.1 5,845,068 + +1.7 5,845,069 - +2.4 5,845,086 - +0.3 5,845,122 - -1.4 5,845,182 + AO353_26700 0.26 -1.9 5,845,182 + AO353_26700 0.26 -0.9 5,845,328 - AO353_26700 0.69 -0.6 5,845,360 + -0.1 5,845,361 - AO353_26700 0.79 -0.1 5,845,434 - +0.7 5,845,459 - -0.4 5,845,590 + AO353_26705 0.19 -0.1 5,845,590 + AO353_26705 0.19 +1.4 5,845,590 + AO353_26705 0.19 +1.5 5,845,590 + AO353_26705 0.19 +0.9 5,845,590 + AO353_26705 0.19 -0.1 5,845,590 + AO353_26705 0.19 -1.4 5,845,590 + AO353_26705 0.19 +0.5 5,845,590 + AO353_26705 0.19 -0.4 5,845,590 + AO353_26705 0.19 +1.1 5,845,591 - AO353_26705 0.19 +0.0 5,845,591 - AO353_26705 0.19 +0.7 5,845,591 - AO353_26705 0.19 +1.6 5,845,591 - AO353_26705 0.19 +0.4 5,845,591 - AO353_26705 0.19 -0.4 5,845,591 - AO353_26705 0.19 +0.4 5,845,591 - AO353_26705 0.19 +2.0 5,845,591 - AO353_26705 0.19 -1.1 5,845,591 - AO353_26705 0.19 -1.2 5,845,591 - AO353_26705 0.19 +0.6 5,845,591 - AO353_26705 0.19 +2.4 5,845,591 - AO353_26705 0.19 -1.7 5,845,591 - AO353_26705 0.19 -1.2 5,845,607 + AO353_26705 0.24 +0.6 5,845,607 + AO353_26705 0.24 -0.1 5,845,634 - AO353_26705 0.33 -1.1 5,845,684 - AO353_26705 0.49 +0.7 5,845,684 - AO353_26705 0.49 +0.5 5,845,684 - AO353_26705 0.49 -0.1 5,845,684 - AO353_26705 0.49 -0.7 5,845,786 + AO353_26705 0.82 -0.6 5,845,786 + AO353_26705 0.82 +0.5 5,845,786 + AO353_26705 0.82 +0.6 5,845,844 + -1.8 5,845,844 + -0.6 5,845,844 + -0.6 5,845,845 - -1.2 5,845,845 - -0.1 5,845,845 - -0.9 5,845,876 - +0.4 5,845,922 + -0.4 5,845,923 - -1.1 5,845,923 - +0.2 5,845,923 - -1.9 5,845,964 + -1.0 5,845,964 + +0.6 5,845,981 + -1.2 5,845,981 + +0.4 5,845,982 - +1.0 5,845,982 - -2.1 5,845,985 + +0.9 5,845,985 + +0.2 5,845,986 - +0.3 5,845,986 - -1.1 5,845,986 - -0.1 5,845,993 + -2.6 5,845,993 + +0.5 5,845,993 + -0.5 5,845,993 + -1.6 5,845,994 - +0.9 5,845,994 - -1.6 5,845,994 - -0.7 5,845,994 - +1.7 5,845,994 - -0.9 5,845,994 - -0.3 5,845,994 - +2.1 5,845,994 - +0.8 5,846,029 - -2.0 5,846,029 - -1.1 5,846,031 + +1.4 5,846,031 + -0.6 5,846,032 - -1.2 5,846,032 - +0.2 5,846,032 - -0.6 5,846,032 - -0.1 5,846,034 + +1.5 5,846,034 + -1.9 5,846,061 + +0.2 5,846,062 - -0.6 5,846,090 + -1.5 5,846,091 - +1.4 5,846,197 - -1.1 5,846,205 + -0.5 5,846,205 + -0.7 5,846,205 + -1.2 5,846,205 + +0.4 5,846,205 + -0.7 5,846,205 + -1.1 5,846,206 - -0.2 5,846,206 - +0.2 5,846,206 - -1.0 5,846,206 - -0.0 5,846,206 - -0.2 5,846,206 - +0.6 5,846,206 - -0.9 5,846,206 - -1.5 5,846,206 - -0.6 5,846,206 - -1.6 5,846,206 - -0.1 5,846,207 + -1.8 5,846,208 - +0.1 5,846,208 - -2.1 5,846,322 + AO353_26710 0.18 +1.3 5,846,322 + AO353_26710 0.18 +1.8 5,846,322 + AO353_26710 0.18 +0.5 5,846,322 + AO353_26710 0.18 +1.1 5,846,322 + AO353_26710 0.18 +1.1 5,846,322 + AO353_26710 0.18 -1.2 5,846,322 + AO353_26710 0.18 -1.2 5,846,323 - AO353_26710 0.18 +0.9 5,846,323 - AO353_26710 0.18 +1.4 5,846,323 - AO353_26710 0.18 +1.9 5,846,323 - AO353_26710 0.18 +1.7 5,846,323 - AO353_26710 0.18 -1.2 5,846,508 + AO353_26710 0.33 +1.5 5,846,508 + AO353_26710 0.33 +1.5 5,846,509 - AO353_26710 0.33 -0.1 5,846,697 - AO353_26710 0.47 -1.8
Or see this region's nucleotide sequence