Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03615 and AO353_03620 are separated by 92 nucleotides AO353_03620 and AO353_03625 are separated by 3 nucleotides AO353_03625 and AO353_03630 are separated by 925 nucleotides
AO353_03615: AO353_03615 - cold-shock protein, at 771,540 to 772,142
_03615
AO353_03620: AO353_03620 - hypothetical protein, at 772,235 to 772,441
_03620
AO353_03625: AO353_03625 - histidine triad (HIT) protein, at 772,445 to 772,870
_03625
AO353_03630: AO353_03630 - porin, at 773,796 to 775,154
_03630
Position (kb) 772
773 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 771.453 kb on + strand at 771.522 kb on + strand at 771.599 kb on + strand at 771.600 kb on - strand at 771.600 kb on - strand at 771.625 kb on - strand, within AO353_03615 at 771.648 kb on + strand, within AO353_03615 at 771.649 kb on - strand, within AO353_03615 at 771.882 kb on + strand, within AO353_03615 at 771.883 kb on - strand, within AO353_03615 at 772.004 kb on + strand, within AO353_03615 at 772.145 kb on + strand at 772.145 kb on + strand at 772.145 kb on + strand at 772.145 kb on + strand at 772.145 kb on + strand at 772.146 kb on - strand at 772.146 kb on - strand at 772.146 kb on - strand at 772.146 kb on - strand at 772.146 kb on - strand at 772.146 kb on - strand at 772.146 kb on - strand at 772.146 kb on - strand at 772.164 kb on - strand at 772.239 kb on + strand at 772.240 kb on - strand at 772.502 kb on + strand, within AO353_03625 at 772.502 kb on + strand, within AO353_03625 at 772.503 kb on - strand, within AO353_03625 at 772.524 kb on + strand, within AO353_03625 at 772.524 kb on + strand, within AO353_03625 at 772.524 kb on + strand, within AO353_03625 at 772.525 kb on - strand, within AO353_03625 at 772.525 kb on - strand, within AO353_03625 at 772.525 kb on - strand, within AO353_03625 at 772.525 kb on - strand, within AO353_03625 at 772.582 kb on + strand, within AO353_03625 at 772.582 kb on + strand, within AO353_03625 at 772.583 kb on - strand, within AO353_03625 at 772.583 kb on - strand, within AO353_03625 at 772.583 kb on - strand, within AO353_03625 at 772.604 kb on + strand, within AO353_03625 at 772.604 kb on + strand, within AO353_03625 at 772.604 kb on + strand, within AO353_03625 at 772.604 kb on + strand, within AO353_03625 at 772.604 kb on + strand, within AO353_03625 at 772.605 kb on - strand, within AO353_03625 at 772.605 kb on - strand, within AO353_03625 at 772.605 kb on - strand, within AO353_03625 at 772.605 kb on - strand, within AO353_03625 at 772.605 kb on - strand, within AO353_03625 at 772.605 kb on - strand, within AO353_03625 at 772.605 kb on - strand, within AO353_03625 at 772.745 kb on - strand, within AO353_03625 at 772.780 kb on - strand, within AO353_03625 at 772.780 kb on - strand, within AO353_03625 at 772.811 kb on + strand, within AO353_03625 at 772.812 kb on - strand, within AO353_03625 at 772.859 kb on + strand at 772.859 kb on + strand at 772.860 kb on - strand at 772.861 kb on - strand at 772.926 kb on - strand at 772.935 kb on + strand at 772.936 kb on - strand at 772.936 kb on - strand at 772.936 kb on - strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.937 kb on + strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.938 kb on - strand at 772.939 kb on + strand at 772.939 kb on + strand at 772.939 kb on + strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.940 kb on - strand at 772.990 kb on + strand at 773.019 kb on - strand at 773.119 kb on + strand at 773.119 kb on + strand at 773.119 kb on + strand at 773.119 kb on + strand at 773.119 kb on + strand at 773.120 kb on - strand at 773.120 kb on - strand at 773.120 kb on - strand at 773.120 kb on - strand at 773.131 kb on + strand at 773.131 kb on + strand at 773.131 kb on + strand at 773.131 kb on + strand at 773.131 kb on + strand at 773.131 kb on + strand at 773.131 kb on + strand at 773.132 kb on - strand at 773.132 kb on - strand at 773.132 kb on - strand at 773.132 kb on - strand at 773.132 kb on - strand at 773.158 kb on - strand at 773.168 kb on + strand at 773.211 kb on + strand at 773.240 kb on + strand at 773.240 kb on + strand at 773.241 kb on - strand at 773.241 kb on - strand at 773.264 kb on + strand at 773.265 kb on - strand at 773.278 kb on + strand at 773.278 kb on + strand at 773.278 kb on + strand at 773.278 kb on + strand at 773.278 kb on + strand at 773.279 kb on - strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.281 kb on + strand at 773.282 kb on - strand at 773.282 kb on - strand at 773.282 kb on - strand at 773.282 kb on - strand at 773.282 kb on - strand at 773.282 kb on - strand at 773.308 kb on + strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.372 kb on - strand at 773.442 kb on + strand at 773.442 kb on + strand at 773.443 kb on - strand at 773.443 kb on - strand at 773.443 kb on - strand at 773.443 kb on - strand at 773.457 kb on + strand at 773.457 kb on + strand at 773.457 kb on + strand at 773.458 kb on - strand at 773.458 kb on - strand at 773.483 kb on + strand at 773.483 kb on + strand at 773.483 kb on + strand at 773.483 kb on + strand at 773.483 kb on + strand at 773.483 kb on + strand at 773.484 kb on - strand at 773.484 kb on - strand at 773.484 kb on - strand at 773.484 kb on - strand at 773.493 kb on + strand at 773.493 kb on + strand at 773.493 kb on + strand at 773.494 kb on - strand at 773.494 kb on - strand at 773.494 kb on - strand at 773.626 kb on - strand at 773.626 kb on - strand at 773.626 kb on - strand at 773.651 kb on - strand at 773.667 kb on + strand at 773.667 kb on + strand at 773.671 kb on + strand at 773.671 kb on + strand at 773.671 kb on + strand at 773.671 kb on + strand at 773.672 kb on - strand at 773.679 kb on + strand at 773.679 kb on + strand at 773.680 kb on - strand at 773.702 kb on + strand at 773.703 kb on - strand at 773.704 kb on + strand at 773.704 kb on + strand at 773.704 kb on + strand at 773.704 kb on + strand at 773.705 kb on - strand at 773.742 kb on + strand at 773.745 kb on + strand at 773.746 kb on - strand at 773.746 kb on - strand at 773.746 kb on - strand at 773.765 kb on + strand at 773.765 kb on + strand at 773.765 kb on + strand at 773.766 kb on - strand at 773.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 771,453 + +6.4 771,522 + +2.4 771,599 + +0.5 771,600 - +1.0 771,600 - -0.3 771,625 - AO353_03615 0.14 +1.0 771,648 + AO353_03615 0.18 -0.5 771,649 - AO353_03615 0.18 +5.4 771,882 + AO353_03615 0.57 +0.5 771,883 - AO353_03615 0.57 +0.5 772,004 + AO353_03615 0.77 -0.3 772,145 + -0.8 772,145 + +0.0 772,145 + -1.3 772,145 + -1.4 772,145 + -1.9 772,146 - +3.6 772,146 - +0.0 772,146 - -1.7 772,146 - -0.8 772,146 - +0.5 772,146 - -0.8 772,146 - +0.2 772,146 - +0.2 772,164 - +2.0 772,239 + +0.8 772,240 - +0.6 772,502 + AO353_03625 0.13 -0.1 772,502 + AO353_03625 0.13 -0.4 772,503 - AO353_03625 0.14 +0.6 772,524 + AO353_03625 0.19 +0.5 772,524 + AO353_03625 0.19 -0.8 772,524 + AO353_03625 0.19 -0.4 772,525 - AO353_03625 0.19 +0.0 772,525 - AO353_03625 0.19 -1.4 772,525 - AO353_03625 0.19 -1.9 772,525 - AO353_03625 0.19 -0.3 772,582 + AO353_03625 0.32 -0.2 772,582 + AO353_03625 0.32 -1.8 772,583 - AO353_03625 0.32 -0.5 772,583 - AO353_03625 0.32 -1.0 772,583 - AO353_03625 0.32 -2.2 772,604 + AO353_03625 0.37 -0.3 772,604 + AO353_03625 0.37 +0.2 772,604 + AO353_03625 0.37 -0.1 772,604 + AO353_03625 0.37 -0.8 772,604 + AO353_03625 0.37 +0.0 772,605 - AO353_03625 0.38 -0.8 772,605 - AO353_03625 0.38 +3.0 772,605 - AO353_03625 0.38 -0.3 772,605 - AO353_03625 0.38 -2.2 772,605 - AO353_03625 0.38 +0.2 772,605 - AO353_03625 0.38 -2.1 772,605 - AO353_03625 0.38 -0.3 772,745 - AO353_03625 0.70 -0.8 772,780 - AO353_03625 0.79 -1.1 772,780 - AO353_03625 0.79 -0.5 772,811 + AO353_03625 0.86 -0.7 772,812 - AO353_03625 0.86 -1.4 772,859 + +2.4 772,859 + -1.1 772,860 - +1.6 772,861 - +0.0 772,926 - +0.0 772,935 + -1.1 772,936 - -1.0 772,936 - +0.5 772,936 - +0.5 772,937 + -2.0 772,937 + +2.5 772,937 + +0.0 772,937 + +1.6 772,937 + -0.2 772,937 + +0.0 772,937 + -0.7 772,937 + +1.4 772,937 + -2.0 772,937 + -0.4 772,937 + +0.0 772,937 + +1.3 772,938 - +0.0 772,938 - -1.4 772,938 - -2.0 772,938 - -1.9 772,938 - +0.0 772,938 - +1.0 772,938 - -1.8 772,938 - +0.0 772,938 - +1.0 772,938 - -1.3 772,938 - -1.3 772,938 - -0.1 772,938 - -0.1 772,939 + -0.4 772,939 + -1.3 772,939 + -0.6 772,940 - -0.3 772,940 - -0.5 772,940 - -1.8 772,940 - -0.8 772,940 - -0.8 772,940 - -1.1 772,940 - -0.6 772,940 - -1.8 772,940 - +2.3 772,940 - -1.0 772,990 + +0.2 773,019 - +1.0 773,119 + +0.3 773,119 + +1.9 773,119 + -0.5 773,119 + +1.1 773,119 + +0.5 773,120 - -1.1 773,120 - -1.0 773,120 - -1.4 773,120 - -0.3 773,131 + +2.6 773,131 + -0.3 773,131 + +0.7 773,131 + -0.3 773,131 + +0.7 773,131 + +1.9 773,131 + -0.3 773,132 - +0.2 773,132 - +2.3 773,132 - +2.0 773,132 - -1.3 773,132 - -1.5 773,158 - -0.3 773,168 + +1.6 773,211 + -1.5 773,240 + -0.3 773,240 + +1.5 773,241 - +0.8 773,241 - -1.1 773,264 + -1.3 773,265 - +1.0 773,278 + +0.5 773,278 + -0.0 773,278 + +1.3 773,278 + +0.7 773,278 + +1.3 773,279 - -1.5 773,281 + +1.0 773,281 + +1.4 773,281 + +0.3 773,281 + +0.2 773,281 + -0.3 773,281 + +0.5 773,281 + +0.0 773,281 + -0.1 773,281 + +1.6 773,281 + -1.4 773,281 + -2.4 773,282 - -1.2 773,282 - -1.9 773,282 - -0.3 773,282 - -1.1 773,282 - -1.7 773,282 - -2.0 773,308 + +0.3 773,309 - -0.8 773,309 - -0.5 773,309 - +0.5 773,372 - -1.1 773,442 + -0.1 773,442 + +0.7 773,443 - -1.3 773,443 - -1.1 773,443 - +1.9 773,443 - -2.0 773,457 + +0.7 773,457 + -0.8 773,457 + +1.2 773,458 - -1.5 773,458 - +0.0 773,483 + -0.2 773,483 + -0.1 773,483 + -1.1 773,483 + -1.2 773,483 + -1.1 773,483 + -0.4 773,484 - -0.5 773,484 - +0.7 773,484 - -1.8 773,484 - -0.8 773,493 + +1.0 773,493 + -0.4 773,493 + +1.8 773,494 - -2.0 773,494 - -1.7 773,494 - +0.5 773,626 - -1.5 773,626 - +1.8 773,626 - -1.3 773,651 - -0.1 773,667 + -0.5 773,667 + +0.6 773,671 + -2.1 773,671 + +1.1 773,671 + -1.4 773,671 + -0.7 773,672 - -1.1 773,679 + +0.0 773,679 + -0.0 773,680 - -0.5 773,702 + +0.2 773,703 - +2.0 773,704 + -1.0 773,704 + +0.2 773,704 + -1.1 773,704 + -0.6 773,705 - -1.0 773,742 + +1.0 773,745 + -0.3 773,746 - -0.5 773,746 - -0.7 773,746 - -1.0 773,765 + +1.0 773,765 + -1.4 773,765 + -1.3 773,766 - -1.4 773,835 - -2.7
Or see this region's nucleotide sequence