Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03470

Experiment: L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03465 and AO353_03470 are separated by 42 nucleotidesAO353_03470 and AO353_03475 are separated by 71 nucleotides AO353_03465: AO353_03465 - arginine-ornithine antiporter, at 740,283 to 741,710 _03465 AO353_03470: AO353_03470 - arginine deiminase, at 741,753 to 743,009 _03470 AO353_03475: AO353_03475 - ornithine carbamoyltransferase, at 743,081 to 744,091 _03475 Position (kb) 741 742 743 744Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 740.869 kb on + strand, within AO353_03465at 740.869 kb on + strand, within AO353_03465at 740.869 kb on + strand, within AO353_03465at 740.870 kb on - strand, within AO353_03465at 740.870 kb on - strand, within AO353_03465at 741.098 kb on - strand, within AO353_03465at 741.341 kb on + strand, within AO353_03465at 741.341 kb on + strand, within AO353_03465at 741.341 kb on + strand, within AO353_03465at 741.341 kb on + strand, within AO353_03465at 741.341 kb on + strand, within AO353_03465at 741.341 kb on + strand, within AO353_03465at 741.341 kb on + strand, within AO353_03465at 741.342 kb on - strand, within AO353_03465at 741.342 kb on - strand, within AO353_03465at 741.342 kb on - strand, within AO353_03465at 741.342 kb on - strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.345 kb on + strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.346 kb on - strand, within AO353_03465at 741.360 kb on + strand, within AO353_03465at 741.360 kb on + strand, within AO353_03465at 741.360 kb on + strand, within AO353_03465at 741.360 kb on + strand, within AO353_03465at 741.360 kb on + strand, within AO353_03465at 741.361 kb on - strand, within AO353_03465at 741.390 kb on + strand, within AO353_03465at 741.390 kb on + strand, within AO353_03465at 741.391 kb on - strand, within AO353_03465at 741.391 kb on - strand, within AO353_03465at 741.391 kb on - strand, within AO353_03465at 741.391 kb on - strand, within AO353_03465at 741.391 kb on - strand, within AO353_03465at 741.408 kb on + strand, within AO353_03465at 741.409 kb on - strand, within AO353_03465at 741.442 kb on - strand, within AO353_03465at 741.501 kb on + strand, within AO353_03465at 741.501 kb on + strand, within AO353_03465at 741.501 kb on + strand, within AO353_03465at 741.501 kb on + strand, within AO353_03465at 741.501 kb on + strand, within AO353_03465at 741.501 kb on + strand, within AO353_03465at 741.501 kb on + strand, within AO353_03465at 741.502 kb on - strand, within AO353_03465at 741.502 kb on - strand, within AO353_03465at 741.502 kb on - strand, within AO353_03465at 741.502 kb on - strand, within AO353_03465at 741.502 kb on - strand, within AO353_03465at 741.502 kb on - strand, within AO353_03465at 741.519 kb on + strand, within AO353_03465at 741.519 kb on + strand, within AO353_03465at 741.519 kb on + strand, within AO353_03465at 741.519 kb on + strand, within AO353_03465at 741.520 kb on - strand, within AO353_03465at 741.520 kb on - strand, within AO353_03465at 741.537 kb on + strand, within AO353_03465at 741.538 kb on - strand, within AO353_03465at 741.561 kb on + strand, within AO353_03465at 741.561 kb on + strand, within AO353_03465at 741.687 kb on + strandat 741.687 kb on + strandat 741.688 kb on - strandat 741.688 kb on - strandat 741.688 kb on - strandat 741.688 kb on - strandat 741.708 kb on + strandat 741.708 kb on + strandat 741.709 kb on - strandat 741.709 kb on - strandat 741.709 kb on - strandat 741.709 kb on - strandat 741.709 kb on - strandat 741.737 kb on - strandat 741.737 kb on - strandat 741.737 kb on - strandat 741.774 kb on + strandat 741.774 kb on + strandat 741.775 kb on - strandat 741.775 kb on - strandat 741.775 kb on - strandat 741.775 kb on - strandat 741.775 kb on - strandat 741.782 kb on - strandat 741.782 kb on - strandat 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.266 kb on + strand, within AO353_03470at 742.339 kb on - strand, within AO353_03470at 742.339 kb on - strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.877 kb on + strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.878 kb on - strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.881 kb on + strand, within AO353_03470at 742.882 kb on - strand, within AO353_03470at 742.882 kb on - strand, within AO353_03470at 742.882 kb on - strand, within AO353_03470at 743.005 kb on - strandat 743.005 kb on - strandat 743.005 kb on - strandat 743.005 kb on - strandat 743.005 kb on - strandat 743.007 kb on + strandat 743.032 kb on + strandat 743.033 kb on - strandat 743.033 kb on - strandat 743.034 kb on + strandat 743.034 kb on + strandat 743.034 kb on + strandat 743.034 kb on + strandat 743.035 kb on - strandat 743.035 kb on - strandat 743.035 kb on - strandat 743.035 kb on - strandat 743.099 kb on - strandat 743.147 kb on + strandat 743.147 kb on + strandat 743.147 kb on + strandat 743.148 kb on - strandat 743.148 kb on - strandat 743.148 kb on - strandat 743.186 kb on + strand, within AO353_03475at 743.186 kb on + strand, within AO353_03475at 743.187 kb on - strand, within AO353_03475at 743.218 kb on + strand, within AO353_03475at 743.218 kb on + strand, within AO353_03475at 743.218 kb on + strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.219 kb on - strand, within AO353_03475at 743.225 kb on - strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.309 kb on + strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.310 kb on - strand, within AO353_03475at 743.555 kb on + strand, within AO353_03475at 743.556 kb on - strand, within AO353_03475at 743.556 kb on - strand, within AO353_03475at 743.556 kb on - strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.561 kb on + strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.562 kb on - strand, within AO353_03475at 743.579 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.631 kb on + strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.632 kb on - strand, within AO353_03475at 743.719 kb on + strand, within AO353_03475at 743.841 kb on - strand, within AO353_03475at 743.854 kb on + strand, within AO353_03475at 743.986 kb on - strand, within AO353_03475at 743.986 kb on - strand, within AO353_03475at 743.997 kb on + strandat 743.997 kb on + strandat 743.997 kb on + strandat 743.998 kb on - strandat 743.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
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740,869 + AO353_03465 0.41 -0.8
740,869 + AO353_03465 0.41 +2.3
740,869 + AO353_03465 0.41 -1.4
740,870 - AO353_03465 0.41 +1.3
740,870 - AO353_03465 0.41 +0.6
741,098 - AO353_03465 0.57 +0.5
741,341 + AO353_03465 0.74 +3.5
741,341 + AO353_03465 0.74 +3.3
741,341 + AO353_03465 0.74 +3.3
741,341 + AO353_03465 0.74 +2.2
741,341 + AO353_03465 0.74 +1.7
741,341 + AO353_03465 0.74 +3.2
741,341 + AO353_03465 0.74 +4.8
741,342 - AO353_03465 0.74 +1.6
741,342 - AO353_03465 0.74 -0.5
741,342 - AO353_03465 0.74 +0.6
741,342 - AO353_03465 0.74 -0.3
741,345 + AO353_03465 0.74 +3.9
741,345 + AO353_03465 0.74 +2.3
741,345 + AO353_03465 0.74 +4.5
741,345 + AO353_03465 0.74 +2.6
741,345 + AO353_03465 0.74 +5.6
741,345 + AO353_03465 0.74 +5.0
741,345 + AO353_03465 0.74 +3.5
741,345 + AO353_03465 0.74 +5.5
741,345 + AO353_03465 0.74 +5.4
741,345 + AO353_03465 0.74 +3.9
741,345 + AO353_03465 0.74 +4.2
741,345 + AO353_03465 0.74 +4.2
741,346 - AO353_03465 0.74 +1.1
741,346 - AO353_03465 0.74 +0.5
741,346 - AO353_03465 0.74 +1.6
741,346 - AO353_03465 0.74 +1.2
741,346 - AO353_03465 0.74 +2.3
741,346 - AO353_03465 0.74 -0.6
741,346 - AO353_03465 0.74 +1.4
741,346 - AO353_03465 0.74 +1.7
741,346 - AO353_03465 0.74 +0.5
741,346 - AO353_03465 0.74 +0.7
741,346 - AO353_03465 0.74 -0.1
741,346 - AO353_03465 0.74 +1.8
741,346 - AO353_03465 0.74 +2.8
741,346 - AO353_03465 0.74 -0.3
741,360 + AO353_03465 0.75 -0.5
741,360 + AO353_03465 0.75 +5.6
741,360 + AO353_03465 0.75 +2.7
741,360 + AO353_03465 0.75 +5.0
741,360 + AO353_03465 0.75 +4.4
741,361 - AO353_03465 0.75 +0.8
741,390 + AO353_03465 0.78 +5.2
741,390 + AO353_03465 0.78 +6.1
741,391 - AO353_03465 0.78 +1.1
741,391 - AO353_03465 0.78 +1.5
741,391 - AO353_03465 0.78 -0.9
741,391 - AO353_03465 0.78 +2.3
741,391 - AO353_03465 0.78 +0.2
741,408 + AO353_03465 0.79 +7.2
741,409 - AO353_03465 0.79 -0.8
741,442 - AO353_03465 0.81 +0.1
741,501 + AO353_03465 0.85 -0.9
741,501 + AO353_03465 0.85 +8.3
741,501 + AO353_03465 0.85 +5.4
741,501 + AO353_03465 0.85 +6.2
741,501 + AO353_03465 0.85 +7.4
741,501 + AO353_03465 0.85 +5.4
741,501 + AO353_03465 0.85 +8.0
741,502 - AO353_03465 0.85 +1.1
741,502 - AO353_03465 0.85 -0.8
741,502 - AO353_03465 0.85 -0.5
741,502 - AO353_03465 0.85 +0.5
741,502 - AO353_03465 0.85 +2.6
741,502 - AO353_03465 0.85 -1.4
741,519 + AO353_03465 0.87 +3.1
741,519 + AO353_03465 0.87 +5.9
741,519 + AO353_03465 0.87 +2.5
741,519 + AO353_03465 0.87 +4.9
741,520 - AO353_03465 0.87 +2.4
741,520 - AO353_03465 0.87 -0.3
741,537 + AO353_03465 0.88 +6.1
741,538 - AO353_03465 0.88 -0.3
741,561 + AO353_03465 0.89 +0.1
741,561 + AO353_03465 0.89 +6.5
741,687 + -0.3
741,687 + +6.4
741,688 - +1.6
741,688 - +0.9
741,688 - -1.4
741,688 - -2.3
741,708 + +6.6
741,708 + +4.9
741,709 - -1.1
741,709 - -1.1
741,709 - +0.6
741,709 - -2.0
741,709 - -1.3
741,737 - -1.5
741,737 - -0.5
741,737 - +0.8
741,774 + -1.9
741,774 + +2.1
741,775 - -0.8
741,775 - +0.6
741,775 - -1.9
741,775 - -2.3
741,775 - +0.8
741,782 - +1.1
741,782 - +0.1
742,266 + AO353_03470 0.41 -0.5
742,266 + AO353_03470 0.41 +0.5
742,266 + AO353_03470 0.41 -0.9
742,266 + AO353_03470 0.41 +2.9
742,266 + AO353_03470 0.41 +0.3
742,266 + AO353_03470 0.41 -1.4
742,266 + AO353_03470 0.41 -0.8
742,339 - AO353_03470 0.47 +1.8
742,339 - AO353_03470 0.47 +0.2
742,877 + AO353_03470 0.89 +6.3
742,877 + AO353_03470 0.89 +0.1
742,877 + AO353_03470 0.89 +0.1
742,877 + AO353_03470 0.89 +1.6
742,877 + AO353_03470 0.89 +1.1
742,878 - AO353_03470 0.89 +1.1
742,878 - AO353_03470 0.89 -1.1
742,878 - AO353_03470 0.89 -0.9
742,878 - AO353_03470 0.89 +0.1
742,881 + AO353_03470 0.90 +5.0
742,881 + AO353_03470 0.90 +6.8
742,881 + AO353_03470 0.90 +6.3
742,881 + AO353_03470 0.90 +7.3
742,881 + AO353_03470 0.90 +6.5
742,881 + AO353_03470 0.90 +4.5
742,882 - AO353_03470 0.90 -1.9
742,882 - AO353_03470 0.90 +3.0
742,882 - AO353_03470 0.90 -0.8
743,005 - -1.3
743,005 - +0.1
743,005 - -0.9
743,005 - +1.1
743,005 - -1.6
743,007 + +0.1
743,032 + -1.5
743,033 - +0.1
743,033 - +0.5
743,034 + -0.3
743,034 + +1.1
743,034 + +1.1
743,034 + +2.1
743,035 - +0.7
743,035 - -0.5
743,035 - -0.9
743,035 - +1.1
743,099 - +0.5
743,147 + +0.9
743,147 + +1.6
743,147 + +1.2
743,148 - -0.4
743,148 - -0.9
743,148 - +0.7
743,186 + AO353_03475 0.10 -0.5
743,186 + AO353_03475 0.10 -0.1
743,187 - AO353_03475 0.10 +0.1
743,218 + AO353_03475 0.14 -1.5
743,218 + AO353_03475 0.14 +1.2
743,218 + AO353_03475 0.14 +0.4
743,219 - AO353_03475 0.14 +2.6
743,219 - AO353_03475 0.14 +0.9
743,219 - AO353_03475 0.14 -1.6
743,219 - AO353_03475 0.14 -0.3
743,219 - AO353_03475 0.14 +0.5
743,225 - AO353_03475 0.14 -0.9
743,309 + AO353_03475 0.23 +0.2
743,309 + AO353_03475 0.23 +0.2
743,309 + AO353_03475 0.23 +0.7
743,309 + AO353_03475 0.23 -0.3
743,309 + AO353_03475 0.23 +1.1
743,309 + AO353_03475 0.23 +1.2
743,309 + AO353_03475 0.23 +0.5
743,310 - AO353_03475 0.23 -1.1
743,310 - AO353_03475 0.23 -0.6
743,310 - AO353_03475 0.23 +0.8
743,310 - AO353_03475 0.23 -0.1
743,310 - AO353_03475 0.23 +1.1
743,310 - AO353_03475 0.23 -1.9
743,310 - AO353_03475 0.23 +2.1
743,310 - AO353_03475 0.23 -1.8
743,310 - AO353_03475 0.23 -1.5
743,310 - AO353_03475 0.23 -1.3
743,555 + AO353_03475 0.47 +1.4
743,556 - AO353_03475 0.47 +0.2
743,556 - AO353_03475 0.47 -0.8
743,556 - AO353_03475 0.47 +1.1
743,561 + AO353_03475 0.47 +1.5
743,561 + AO353_03475 0.47 -0.8
743,561 + AO353_03475 0.47 -1.6
743,561 + AO353_03475 0.47 -1.3
743,562 - AO353_03475 0.48 -1.4
743,562 - AO353_03475 0.48 +1.3
743,562 - AO353_03475 0.48 +0.2
743,562 - AO353_03475 0.48 -0.8
743,562 - AO353_03475 0.48 +1.1
743,562 - AO353_03475 0.48 -0.5
743,562 - AO353_03475 0.48 +2.5
743,579 + AO353_03475 0.49 +0.2
743,631 + AO353_03475 0.54 -1.8
743,631 + AO353_03475 0.54 -1.6
743,631 + AO353_03475 0.54 +1.1
743,631 + AO353_03475 0.54 -0.5
743,632 - AO353_03475 0.55 -1.2
743,632 - AO353_03475 0.55 +0.3
743,632 - AO353_03475 0.55 -2.2
743,632 - AO353_03475 0.55 +0.3
743,632 - AO353_03475 0.55 -0.0
743,632 - AO353_03475 0.55 -1.4
743,719 + AO353_03475 0.63 -1.3
743,841 - AO353_03475 0.75 -0.9
743,854 + AO353_03475 0.76 -0.4
743,986 - AO353_03475 0.90 -0.5
743,986 - AO353_03475 0.90 +0.1
743,997 + -0.8
743,997 + -0.8
743,997 + -1.1
743,998 - -2.2
743,998 - -1.1

Or see this region's nucleotide sequence