Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03460 and AO353_03465 are separated by 496 nucleotides AO353_03465 and AO353_03470 are separated by 42 nucleotides
AO353_03460: AO353_03460 - 3-methyladenine DNA glycosylase 2, at 738,923 to 739,786
_03460
AO353_03465: AO353_03465 - arginine-ornithine antiporter, at 740,283 to 741,710
_03465
AO353_03470: AO353_03470 - arginine deiminase, at 741,753 to 743,009
_03470
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 739.345 kb on - strand, within AO353_03460 at 739.416 kb on - strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.604 kb on + strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.619 kb on - strand, within AO353_03460 at 739.633 kb on + strand, within AO353_03460 at 739.755 kb on + strand at 739.755 kb on + strand at 739.756 kb on - strand at 739.767 kb on + strand at 739.768 kb on - strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.878 kb on - strand at 739.878 kb on - strand at 739.896 kb on + strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.900 kb on + strand at 739.900 kb on + strand at 739.901 kb on - strand at 739.912 kb on + strand at 739.921 kb on - strand at 739.921 kb on - strand at 739.923 kb on + strand at 739.924 kb on - strand at 739.967 kb on + strand at 739.967 kb on + strand at 739.967 kb on + strand at 739.968 kb on - strand at 740.010 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.015 kb on - strand at 740.068 kb on + strand at 740.068 kb on + strand at 740.069 kb on - strand at 740.069 kb on - strand at 740.069 kb on - strand at 740.112 kb on + strand at 740.113 kb on - strand at 740.167 kb on + strand at 740.168 kb on - strand at 740.168 kb on - strand at 740.244 kb on + strand at 740.306 kb on - strand at 740.306 kb on - strand at 740.306 kb on - strand at 740.321 kb on - strand at 740.332 kb on + strand at 740.332 kb on + strand at 740.333 kb on - strand at 740.333 kb on - strand at 740.333 kb on - strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.505 kb on + strand, within AO353_03465 at 740.505 kb on + strand, within AO353_03465 at 740.505 kb on + strand, within AO353_03465 at 740.506 kb on - strand, within AO353_03465 at 740.506 kb on - strand, within AO353_03465 at 740.512 kb on - strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.595 kb on + strand, within AO353_03465 at 740.596 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.625 kb on + strand, within AO353_03465 at 740.625 kb on + strand, within AO353_03465 at 740.655 kb on - strand, within AO353_03465 at 740.655 kb on - strand, within AO353_03465 at 740.869 kb on + strand, within AO353_03465 at 740.869 kb on + strand, within AO353_03465 at 740.869 kb on + strand, within AO353_03465 at 740.870 kb on - strand, within AO353_03465 at 740.870 kb on - strand, within AO353_03465 at 741.098 kb on - strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.341 kb on + strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.342 kb on - strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.345 kb on + strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.346 kb on - strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.360 kb on + strand, within AO353_03465 at 741.361 kb on - strand, within AO353_03465 at 741.390 kb on + strand, within AO353_03465 at 741.390 kb on + strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.391 kb on - strand, within AO353_03465 at 741.408 kb on + strand, within AO353_03465 at 741.409 kb on - strand, within AO353_03465 at 741.442 kb on - strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.501 kb on + strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.502 kb on - strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.519 kb on + strand, within AO353_03465 at 741.520 kb on - strand, within AO353_03465 at 741.520 kb on - strand, within AO353_03465 at 741.537 kb on + strand, within AO353_03465 at 741.538 kb on - strand, within AO353_03465 at 741.561 kb on + strand, within AO353_03465 at 741.561 kb on + strand, within AO353_03465 at 741.687 kb on + strand at 741.687 kb on + strand at 741.688 kb on - strand at 741.688 kb on - strand at 741.688 kb on - strand at 741.688 kb on - strand at 741.708 kb on + strand at 741.708 kb on + strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.709 kb on - strand at 741.737 kb on - strand at 741.737 kb on - strand at 741.737 kb on - strand at 741.774 kb on + strand at 741.774 kb on + strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.775 kb on - strand at 741.782 kb on - strand at 741.782 kb on - strand at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.266 kb on + strand, within AO353_03470 at 742.339 kb on - strand, within AO353_03470 at 742.339 kb on - strand, within AO353_03470
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 739,345 - AO353_03460 0.49 -0.9 739,416 - AO353_03460 0.57 -0.8 739,454 + AO353_03460 0.61 -0.5 739,454 + AO353_03460 0.61 -0.9 739,454 + AO353_03460 0.61 +0.7 739,454 + AO353_03460 0.61 -0.1 739,454 + AO353_03460 0.61 +2.9 739,454 + AO353_03460 0.61 +2.1 739,454 + AO353_03460 0.61 -0.5 739,604 + AO353_03460 0.79 +1.9 739,605 - AO353_03460 0.79 -0.7 739,605 - AO353_03460 0.79 +0.9 739,605 - AO353_03460 0.79 +0.5 739,605 - AO353_03460 0.79 +0.5 739,605 - AO353_03460 0.79 +2.4 739,618 + AO353_03460 0.80 +0.6 739,618 + AO353_03460 0.80 +0.2 739,619 - AO353_03460 0.81 +3.1 739,633 + AO353_03460 0.82 -1.1 739,755 + +0.1 739,755 + +2.6 739,756 - +0.2 739,767 + +2.1 739,768 - +1.2 739,834 + +0.2 739,834 + -0.5 739,834 + +1.0 739,834 + +1.1 739,834 + +1.2 739,834 + +3.6 739,835 - +0.2 739,835 - -0.5 739,835 - +1.1 739,835 - -0.9 739,835 - -0.5 739,835 - +1.7 739,878 - -0.9 739,878 - -1.5 739,896 + -0.5 739,897 - +0.7 739,897 - -0.5 739,897 - -1.9 739,897 - +2.4 739,900 + -0.8 739,900 + -1.1 739,901 - +0.6 739,912 + -1.9 739,921 - +0.2 739,921 - +1.1 739,923 + -0.3 739,924 - +1.1 739,967 + -1.5 739,967 + +2.3 739,967 + -1.6 739,968 - -1.8 740,010 + -2.0 740,014 + -1.3 740,014 + +3.1 740,014 + -2.9 740,014 + -1.3 740,014 + -0.5 740,015 - +0.5 740,068 + +1.1 740,068 + +1.1 740,069 - -0.5 740,069 - -1.5 740,069 - -0.0 740,112 + +0.7 740,113 - +1.1 740,167 + -0.8 740,168 - -0.3 740,168 - +2.6 740,244 + +0.1 740,306 - -1.4 740,306 - +0.5 740,306 - +0.7 740,321 - +0.5 740,332 + +5.9 740,332 + +0.4 740,333 - +3.0 740,333 - -0.5 740,333 - -1.2 740,335 + +1.2 740,335 + -0.9 740,335 + +0.7 740,335 + +0.9 740,335 + +0.4 740,335 + +1.1 740,335 + +1.4 740,335 + +0.5 740,335 + +0.6 740,335 + +2.1 740,335 + +0.7 740,335 + +0.1 740,335 + +0.2 740,335 + +2.2 740,336 - +1.6 740,336 - -0.9 740,336 - +1.1 740,336 - +0.5 740,336 - +3.4 740,336 - +1.2 740,336 - -1.4 740,336 - +1.4 740,336 - +1.7 740,336 - -0.8 740,505 + AO353_03465 0.16 +1.1 740,505 + AO353_03465 0.16 -0.1 740,505 + AO353_03465 0.16 -1.9 740,506 - AO353_03465 0.16 -0.7 740,506 - AO353_03465 0.16 -1.3 740,512 - AO353_03465 0.16 +0.8 740,535 + AO353_03465 0.18 +1.6 740,535 + AO353_03465 0.18 -1.6 740,535 + AO353_03465 0.18 +1.5 740,535 + AO353_03465 0.18 -1.5 740,535 + AO353_03465 0.18 +1.5 740,535 + AO353_03465 0.18 +3.7 740,535 + AO353_03465 0.18 +0.5 740,535 + AO353_03465 0.18 +1.6 740,535 + AO353_03465 0.18 +1.2 740,535 + AO353_03465 0.18 -0.8 740,536 - AO353_03465 0.18 +0.2 740,536 - AO353_03465 0.18 -0.8 740,536 - AO353_03465 0.18 +4.4 740,536 - AO353_03465 0.18 -0.5 740,536 - AO353_03465 0.18 -1.3 740,595 + AO353_03465 0.22 +0.4 740,596 - AO353_03465 0.22 -1.8 740,603 - AO353_03465 0.22 +1.6 740,603 - AO353_03465 0.22 -0.2 740,603 - AO353_03465 0.22 +1.6 740,625 + AO353_03465 0.24 +1.9 740,625 + AO353_03465 0.24 -1.9 740,655 - AO353_03465 0.26 -0.1 740,655 - AO353_03465 0.26 +0.7 740,869 + AO353_03465 0.41 -0.8 740,869 + AO353_03465 0.41 +2.3 740,869 + AO353_03465 0.41 -1.4 740,870 - AO353_03465 0.41 +1.3 740,870 - AO353_03465 0.41 +0.6 741,098 - AO353_03465 0.57 +0.5 741,341 + AO353_03465 0.74 +3.5 741,341 + AO353_03465 0.74 +3.3 741,341 + AO353_03465 0.74 +3.3 741,341 + AO353_03465 0.74 +2.2 741,341 + AO353_03465 0.74 +1.7 741,341 + AO353_03465 0.74 +3.2 741,341 + AO353_03465 0.74 +4.8 741,342 - AO353_03465 0.74 +1.6 741,342 - AO353_03465 0.74 -0.5 741,342 - AO353_03465 0.74 +0.6 741,342 - AO353_03465 0.74 -0.3 741,345 + AO353_03465 0.74 +3.9 741,345 + AO353_03465 0.74 +2.3 741,345 + AO353_03465 0.74 +4.5 741,345 + AO353_03465 0.74 +2.6 741,345 + AO353_03465 0.74 +5.6 741,345 + AO353_03465 0.74 +5.0 741,345 + AO353_03465 0.74 +3.5 741,345 + AO353_03465 0.74 +5.5 741,345 + AO353_03465 0.74 +5.4 741,345 + AO353_03465 0.74 +3.9 741,345 + AO353_03465 0.74 +4.2 741,345 + AO353_03465 0.74 +4.2 741,346 - AO353_03465 0.74 +1.1 741,346 - AO353_03465 0.74 +0.5 741,346 - AO353_03465 0.74 +1.6 741,346 - AO353_03465 0.74 +1.2 741,346 - AO353_03465 0.74 +2.3 741,346 - AO353_03465 0.74 -0.6 741,346 - AO353_03465 0.74 +1.4 741,346 - AO353_03465 0.74 +1.7 741,346 - AO353_03465 0.74 +0.5 741,346 - AO353_03465 0.74 +0.7 741,346 - AO353_03465 0.74 -0.1 741,346 - AO353_03465 0.74 +1.8 741,346 - AO353_03465 0.74 +2.8 741,346 - AO353_03465 0.74 -0.3 741,360 + AO353_03465 0.75 -0.5 741,360 + AO353_03465 0.75 +5.6 741,360 + AO353_03465 0.75 +2.7 741,360 + AO353_03465 0.75 +5.0 741,360 + AO353_03465 0.75 +4.4 741,361 - AO353_03465 0.75 +0.8 741,390 + AO353_03465 0.78 +5.2 741,390 + AO353_03465 0.78 +6.1 741,391 - AO353_03465 0.78 +1.1 741,391 - AO353_03465 0.78 +1.5 741,391 - AO353_03465 0.78 -0.9 741,391 - AO353_03465 0.78 +2.3 741,391 - AO353_03465 0.78 +0.2 741,408 + AO353_03465 0.79 +7.2 741,409 - AO353_03465 0.79 -0.8 741,442 - AO353_03465 0.81 +0.1 741,501 + AO353_03465 0.85 -0.9 741,501 + AO353_03465 0.85 +8.3 741,501 + AO353_03465 0.85 +5.4 741,501 + AO353_03465 0.85 +6.2 741,501 + AO353_03465 0.85 +7.4 741,501 + AO353_03465 0.85 +5.4 741,501 + AO353_03465 0.85 +8.0 741,502 - AO353_03465 0.85 +1.1 741,502 - AO353_03465 0.85 -0.8 741,502 - AO353_03465 0.85 -0.5 741,502 - AO353_03465 0.85 +0.5 741,502 - AO353_03465 0.85 +2.6 741,502 - AO353_03465 0.85 -1.4 741,519 + AO353_03465 0.87 +3.1 741,519 + AO353_03465 0.87 +5.9 741,519 + AO353_03465 0.87 +2.5 741,519 + AO353_03465 0.87 +4.9 741,520 - AO353_03465 0.87 +2.4 741,520 - AO353_03465 0.87 -0.3 741,537 + AO353_03465 0.88 +6.1 741,538 - AO353_03465 0.88 -0.3 741,561 + AO353_03465 0.89 +0.1 741,561 + AO353_03465 0.89 +6.5 741,687 + -0.3 741,687 + +6.4 741,688 - +1.6 741,688 - +0.9 741,688 - -1.4 741,688 - -2.3 741,708 + +6.6 741,708 + +4.9 741,709 - -1.1 741,709 - -1.1 741,709 - +0.6 741,709 - -2.0 741,709 - -1.3 741,737 - -1.5 741,737 - -0.5 741,737 - +0.8 741,774 + -1.9 741,774 + +2.1 741,775 - -0.8 741,775 - +0.6 741,775 - -1.9 741,775 - -2.3 741,775 - +0.8 741,782 - +1.1 741,782 - +0.1 742,266 + AO353_03470 0.41 -0.5 742,266 + AO353_03470 0.41 +0.5 742,266 + AO353_03470 0.41 -0.9 742,266 + AO353_03470 0.41 +2.9 742,266 + AO353_03470 0.41 +0.3 742,266 + AO353_03470 0.41 -1.4 742,266 + AO353_03470 0.41 -0.8 742,339 - AO353_03470 0.47 +1.8 742,339 - AO353_03470 0.47 +0.2
Or see this region's nucleotide sequence