Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03045 and AO353_03050 overlap by 4 nucleotides AO353_03050 and AO353_03055 are separated by 91 nucleotides AO353_03055 and AO353_03060 are separated by 726 nucleotides
AO353_03045: AO353_03045 - ABC transporter for L-Arginine and L-Citrulline, permease component 1 <small>(from data)</small>, at 649,922 to 650,620
_03045
AO353_03050: AO353_03050 - ABC transporter for L-Arginine and L-Citrulline, permease component 2 <small>(from data)</small>, at 650,617 to 651,306
_03050
AO353_03055: AO353_03055 - ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component <small>(from data)</small>, at 651,398 to 652,174
_03055
AO353_03060: AO353_03060 - Acetyl-coenzyme A synthetase (EC 6.2.1.1) <small>(from data)</small>, at 652,901 to 654,856
_03060
Position (kb) 651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 650.398 kb on - strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.442 kb on + strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.443 kb on - strand, within AO353_03045 at 650.449 kb on - strand, within AO353_03045 at 650.449 kb on - strand, within AO353_03045 at 650.449 kb on - strand, within AO353_03045 at 650.578 kb on - strand at 650.607 kb on + strand at 650.608 kb on - strand at 650.608 kb on - strand at 650.608 kb on - strand at 650.608 kb on - strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.621 kb on - strand at 650.636 kb on - strand at 650.648 kb on + strand at 650.702 kb on + strand at 650.702 kb on + strand, within AO353_03050 at 650.702 kb on + strand, within AO353_03050 at 650.702 kb on + strand, within AO353_03050 at 650.702 kb on + strand, within AO353_03050 at 650.703 kb on - strand, within AO353_03050 at 650.703 kb on - strand, within AO353_03050 at 650.703 kb on - strand, within AO353_03050 at 650.835 kb on + strand, within AO353_03050 at 650.841 kb on + strand, within AO353_03050 at 650.842 kb on - strand, within AO353_03050 at 650.916 kb on - strand, within AO353_03050 at 650.984 kb on + strand, within AO353_03050 at 650.984 kb on + strand, within AO353_03050 at 650.984 kb on + strand, within AO353_03050 at 650.985 kb on - strand, within AO353_03050 at 650.985 kb on - strand, within AO353_03050 at 651.044 kb on + strand, within AO353_03050 at 651.044 kb on + strand, within AO353_03050 at 651.044 kb on + strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.045 kb on - strand, within AO353_03050 at 651.152 kb on + strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.153 kb on - strand, within AO353_03050 at 651.395 kb on + strand at 651.395 kb on + strand at 651.395 kb on + strand at 651.395 kb on + strand at 651.396 kb on - strand at 651.396 kb on - strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.399 kb on + strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.400 kb on - strand at 651.403 kb on + strand at 651.408 kb on + strand at 651.408 kb on + strand at 651.409 kb on - strand at 651.412 kb on + strand at 651.426 kb on + strand at 651.426 kb on + strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.427 kb on - strand at 651.447 kb on + strand at 651.448 kb on - strand at 651.448 kb on - strand at 651.448 kb on - strand at 651.526 kb on + strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.547 kb on - strand, within AO353_03055 at 651.675 kb on + strand, within AO353_03055 at 651.676 kb on - strand, within AO353_03055 at 651.676 kb on - strand, within AO353_03055 at 651.696 kb on + strand, within AO353_03055 at 651.852 kb on + strand, within AO353_03055 at 651.852 kb on + strand, within AO353_03055 at 651.852 kb on + strand, within AO353_03055 at 651.852 kb on + strand, within AO353_03055 at 651.852 kb on + strand, within AO353_03055 at 651.852 kb on + strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.853 kb on - strand, within AO353_03055 at 651.855 kb on + strand, within AO353_03055 at 651.855 kb on + strand, within AO353_03055 at 651.855 kb on + strand, within AO353_03055 at 651.855 kb on + strand, within AO353_03055 at 651.855 kb on + strand, within AO353_03055 at 651.855 kb on + strand, within AO353_03055 at 651.856 kb on - strand, within AO353_03055 at 651.856 kb on - strand, within AO353_03055 at 651.856 kb on - strand, within AO353_03055 at 651.856 kb on - strand, within AO353_03055 at 651.856 kb on - strand, within AO353_03055 at 652.075 kb on - strand, within AO353_03055 at 652.177 kb on + strand at 652.177 kb on + strand at 652.177 kb on + strand at 652.177 kb on + strand at 652.177 kb on + strand at 652.177 kb on + strand at 652.178 kb on - strand at 652.178 kb on - strand at 652.178 kb on - strand at 652.178 kb on - strand at 652.193 kb on + strand at 652.194 kb on - strand at 652.194 kb on - strand at 652.227 kb on + strand at 652.228 kb on - strand at 652.258 kb on + strand at 652.265 kb on + strand at 652.265 kb on + strand at 652.265 kb on + strand at 652.266 kb on - strand at 652.266 kb on - strand at 652.332 kb on + strand at 652.457 kb on + strand at 652.458 kb on - strand at 652.458 kb on - strand at 652.458 kb on - strand at 652.477 kb on + strand at 652.477 kb on + strand at 652.477 kb on + strand at 652.478 kb on - strand at 652.496 kb on + strand at 652.496 kb on + strand at 652.497 kb on - strand at 652.524 kb on - strand at 652.531 kb on - strand at 652.531 kb on - strand at 652.531 kb on - strand at 652.539 kb on + strand at 652.539 kb on + strand at 652.539 kb on + strand at 652.540 kb on - strand at 652.540 kb on - strand at 652.606 kb on + strand at 652.606 kb on + strand at 652.606 kb on + strand at 652.606 kb on + strand at 652.607 kb on - strand at 652.611 kb on - strand at 652.646 kb on + strand at 652.647 kb on - strand at 652.661 kb on + strand at 652.665 kb on + strand at 652.665 kb on + strand at 652.665 kb on + strand at 652.665 kb on + strand at 652.665 kb on + strand at 652.666 kb on - strand at 652.666 kb on - strand at 652.666 kb on - strand at 652.666 kb on - strand at 652.666 kb on - strand at 652.666 kb on - strand at 652.679 kb on + strand at 652.902 kb on + strand at 652.928 kb on - strand at 652.972 kb on + strand at 652.972 kb on + strand at 652.973 kb on - strand at 652.973 kb on - strand at 652.973 kb on - strand at 652.973 kb on - strand at 652.989 kb on + strand at 652.990 kb on - strand at 652.990 kb on - strand at 652.990 kb on - strand at 653.172 kb on + strand, within AO353_03060 at 653.172 kb on + strand, within AO353_03060 at 653.172 kb on + strand, within AO353_03060 at 653.172 kb on + strand, within AO353_03060 at 653.173 kb on - strand, within AO353_03060 at 653.173 kb on - strand, within AO353_03060 at 653.173 kb on - strand, within AO353_03060 at 653.173 kb on - strand, within AO353_03060 at 653.173 kb on - strand, within AO353_03060 at 653.173 kb on - strand, within AO353_03060
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 650,398 - AO353_03045 0.68 +1.1 650,442 + AO353_03045 0.74 -1.8 650,442 + AO353_03045 0.74 -0.3 650,442 + AO353_03045 0.74 -1.3 650,442 + AO353_03045 0.74 -2.3 650,442 + AO353_03045 0.74 +0.5 650,442 + AO353_03045 0.74 -1.9 650,443 - AO353_03045 0.75 -0.3 650,443 - AO353_03045 0.75 -2.3 650,443 - AO353_03045 0.75 -1.1 650,443 - AO353_03045 0.75 -0.9 650,443 - AO353_03045 0.75 -2.3 650,443 - AO353_03045 0.75 -1.0 650,449 - AO353_03045 0.75 +0.1 650,449 - AO353_03045 0.75 -0.3 650,449 - AO353_03045 0.75 -1.4 650,578 - -1.8 650,607 + -1.1 650,608 - +0.5 650,608 - -0.9 650,608 - +2.1 650,608 - -0.6 650,620 + -1.5 650,620 + -1.1 650,620 + -2.3 650,620 + -1.1 650,620 + -1.6 650,620 + +0.7 650,620 + -0.0 650,620 + -1.3 650,621 - +0.5 650,621 - +0.5 650,621 - +0.1 650,621 - -0.1 650,621 - +1.5 650,621 - -0.3 650,621 - -1.4 650,621 - -0.5 650,621 - -0.1 650,636 - +0.5 650,648 + -2.4 650,702 + +2.1 650,702 + AO353_03050 0.12 -1.9 650,702 + AO353_03050 0.12 -1.1 650,702 + AO353_03050 0.12 -0.5 650,702 + AO353_03050 0.12 -0.9 650,703 - AO353_03050 0.12 +0.3 650,703 - AO353_03050 0.12 +0.1 650,703 - AO353_03050 0.12 -0.3 650,835 + AO353_03050 0.32 -1.4 650,841 + AO353_03050 0.32 +1.1 650,842 - AO353_03050 0.33 +2.5 650,916 - AO353_03050 0.43 +1.1 650,984 + AO353_03050 0.53 +0.6 650,984 + AO353_03050 0.53 -1.5 650,984 + AO353_03050 0.53 -0.9 650,985 - AO353_03050 0.53 +0.3 650,985 - AO353_03050 0.53 +2.5 651,044 + AO353_03050 0.62 -1.6 651,044 + AO353_03050 0.62 -0.9 651,044 + AO353_03050 0.62 -0.8 651,045 - AO353_03050 0.62 -0.4 651,045 - AO353_03050 0.62 +0.7 651,045 - AO353_03050 0.62 +0.2 651,045 - AO353_03050 0.62 +2.1 651,152 + AO353_03050 0.78 +1.4 651,153 - AO353_03050 0.78 -2.4 651,153 - AO353_03050 0.78 -1.3 651,153 - AO353_03050 0.78 -0.3 651,153 - AO353_03050 0.78 +0.8 651,153 - AO353_03050 0.78 -2.0 651,153 - AO353_03050 0.78 -0.4 651,395 + -2.1 651,395 + -0.3 651,395 + -2.7 651,395 + +1.0 651,396 - -0.3 651,396 - +0.5 651,399 + -1.5 651,399 + -0.8 651,399 + +0.0 651,399 + -1.4 651,399 + -1.8 651,399 + -1.3 651,399 + -0.3 651,399 + -1.4 651,399 + -1.8 651,399 + -1.0 651,399 + -2.3 651,399 + -1.1 651,399 + -0.8 651,399 + +0.5 651,400 - -1.7 651,400 - -2.1 651,400 - -1.5 651,400 - +1.5 651,400 - -0.8 651,403 + -1.0 651,408 + -1.8 651,408 + -0.3 651,409 - +3.6 651,412 + -1.9 651,426 + -2.0 651,426 + -1.1 651,427 - +1.6 651,427 - -1.1 651,427 - -2.1 651,427 - -0.1 651,427 - -1.2 651,427 - -0.5 651,447 + -0.9 651,448 - -0.8 651,448 - +2.0 651,448 - +2.0 651,526 + AO353_03055 0.16 -1.5 651,547 - AO353_03055 0.19 +0.1 651,547 - AO353_03055 0.19 -0.8 651,547 - AO353_03055 0.19 -1.7 651,547 - AO353_03055 0.19 -0.8 651,547 - AO353_03055 0.19 -1.5 651,547 - AO353_03055 0.19 -1.4 651,675 + AO353_03055 0.36 -2.8 651,676 - AO353_03055 0.36 +1.5 651,676 - AO353_03055 0.36 -1.0 651,696 + AO353_03055 0.38 -1.0 651,852 + AO353_03055 0.58 +0.0 651,852 + AO353_03055 0.58 +0.0 651,852 + AO353_03055 0.58 +0.0 651,852 + AO353_03055 0.58 -0.8 651,852 + AO353_03055 0.58 +0.9 651,852 + AO353_03055 0.58 -1.0 651,853 - AO353_03055 0.59 -0.1 651,853 - AO353_03055 0.59 +1.5 651,853 - AO353_03055 0.59 -0.4 651,853 - AO353_03055 0.59 -2.3 651,853 - AO353_03055 0.59 -0.8 651,853 - AO353_03055 0.59 -2.3 651,853 - AO353_03055 0.59 -1.4 651,853 - AO353_03055 0.59 -1.1 651,853 - AO353_03055 0.59 -2.0 651,855 + AO353_03055 0.59 -1.3 651,855 + AO353_03055 0.59 +0.2 651,855 + AO353_03055 0.59 -2.3 651,855 + AO353_03055 0.59 +1.0 651,855 + AO353_03055 0.59 -1.5 651,855 + AO353_03055 0.59 -3.1 651,856 - AO353_03055 0.59 +1.0 651,856 - AO353_03055 0.59 +0.2 651,856 - AO353_03055 0.59 -2.0 651,856 - AO353_03055 0.59 -3.5 651,856 - AO353_03055 0.59 -0.7 652,075 - AO353_03055 0.87 -1.7 652,177 + -2.2 652,177 + -3.3 652,177 + -1.5 652,177 + -1.9 652,177 + +1.0 652,177 + -0.8 652,178 - -1.0 652,178 - -0.8 652,178 - -0.1 652,178 - -1.0 652,193 + -0.1 652,194 - +1.0 652,194 - +0.0 652,227 + -1.0 652,228 - -0.5 652,258 + -0.5 652,265 + -2.0 652,265 + -0.2 652,265 + +1.0 652,266 - +0.5 652,266 - -0.7 652,332 + -0.8 652,457 + +0.5 652,458 - +0.8 652,458 - -0.1 652,458 - -1.3 652,477 + +1.0 652,477 + -1.3 652,477 + -1.7 652,478 - +0.1 652,496 + +0.0 652,496 + -2.7 652,497 - +0.5 652,524 - -0.5 652,531 - +1.7 652,531 - +0.9 652,531 - +0.3 652,539 + -1.0 652,539 + -0.2 652,539 + -1.7 652,540 - -1.5 652,540 - +0.2 652,606 + -0.3 652,606 + +0.0 652,606 + -0.2 652,606 + -3.7 652,607 - +0.3 652,611 - -0.5 652,646 + +0.3 652,647 - +1.2 652,661 + -0.1 652,665 + +1.9 652,665 + -1.3 652,665 + +0.7 652,665 + -1.8 652,665 + -2.0 652,666 - -0.3 652,666 - +0.1 652,666 - +2.8 652,666 - +0.6 652,666 - +0.0 652,666 - +1.5 652,679 + -1.3 652,902 + +0.5 652,928 - +2.0 652,972 + +0.6 652,972 + -1.3 652,973 - -1.8 652,973 - +0.0 652,973 - +2.3 652,973 - -0.7 652,989 + +1.0 652,990 - +0.3 652,990 - +0.8 652,990 - -0.5 653,172 + AO353_03060 0.14 +0.2 653,172 + AO353_03060 0.14 -0.9 653,172 + AO353_03060 0.14 -1.0 653,172 + AO353_03060 0.14 +0.8 653,173 - AO353_03060 0.14 +0.2 653,173 - AO353_03060 0.14 -0.5 653,173 - AO353_03060 0.14 +0.6 653,173 - AO353_03060 0.14 +1.6 653,173 - AO353_03060 0.14 -0.2 653,173 - AO353_03060 0.14 +2.4
Or see this region's nucleotide sequence