Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01440

Experiment: L-Ornithine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01430 and AO353_01435 overlap by 4 nucleotidesAO353_01435 and AO353_01440 overlap by 1 nucleotidesAO353_01440 and AO353_01445 overlap by 4 nucleotidesAO353_01445 and AO353_01450 are separated by 24 nucleotides AO353_01430: AO353_01430 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 308,605 to 309,624 _01430 AO353_01435: AO353_01435 - protein tyrosine phosphatase, at 309,621 to 310,085 _01435 AO353_01440: AO353_01440 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 310,085 to 310,849 _01440 AO353_01445: AO353_01445 - hypothetical protein, at 310,846 to 311,031 _01445 AO353_01450: AO353_01450 - tetraacyldisaccharide 4'-kinase, at 311,056 to 312,066 _01450 Position (kb) 310 311Strain fitness (log2 ratio) -2 -1 0 1 2 3at 309.625 kb on - strandat 309.710 kb on - strand, within AO353_01435at 309.710 kb on - strand, within AO353_01435at 309.710 kb on - strand, within AO353_01435at 309.710 kb on - strand, within AO353_01435at 309.713 kb on - strand, within AO353_01435at 309.713 kb on - strand, within AO353_01435at 309.746 kb on - strand, within AO353_01435at 309.845 kb on - strand, within AO353_01435at 309.845 kb on - strand, within AO353_01435at 309.899 kb on - strand, within AO353_01435at 311.058 kb on - strandat 311.058 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine
remove
309,625 - -0.8
309,710 - AO353_01435 0.19 +2.9
309,710 - AO353_01435 0.19 +1.0
309,710 - AO353_01435 0.19 -0.1
309,710 - AO353_01435 0.19 -2.7
309,713 - AO353_01435 0.20 -1.1
309,713 - AO353_01435 0.20 -0.5
309,746 - AO353_01435 0.27 -2.0
309,845 - AO353_01435 0.48 +0.8
309,845 - AO353_01435 0.48 +2.0
309,899 - AO353_01435 0.60 -0.7
311,058 - -0.3
311,058 - -1.3

Or see this region's nucleotide sequence