Experiment: L-Ornithine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00320 and AO353_00325 are separated by 276 nucleotides AO353_00325 and AO353_00330 are separated by 63 nucleotides AO353_00330 and AO353_00335 are separated by 188 nucleotides AO353_00335 and AO353_00340 are separated by 123 nucleotides
AO353_00320: AO353_00320 - chemotaxis protein CheY, at 58,643 to 59,824
_00320
AO353_00325: AO353_00325 - pilus assembly protein, at 60,101 to 60,400
_00325
AO353_00330: AO353_00330 - hypothetical protein, at 60,464 to 61,153
_00330
AO353_00335: AO353_00335 - phosphatase, at 61,342 to 61,962
_00335
AO353_00340: AO353_00340 - chromosome partitioning protein ParA, at 62,086 to 62,349
_00340
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 59.847 kb on - strand at 59.857 kb on - strand at 59.904 kb on - strand at 59.940 kb on - strand at 59.969 kb on - strand at 59.969 kb on - strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.035 kb on + strand at 60.036 kb on - strand at 60.036 kb on - strand at 60.036 kb on - strand at 60.057 kb on + strand at 60.058 kb on - strand at 60.058 kb on - strand at 60.059 kb on + strand at 60.059 kb on + strand at 60.059 kb on + strand at 60.059 kb on + strand at 60.060 kb on - strand at 60.060 kb on - strand at 60.060 kb on - strand at 60.060 kb on - strand at 60.122 kb on + strand at 60.122 kb on + strand at 60.123 kb on - strand at 60.140 kb on + strand, within AO353_00325 at 60.140 kb on + strand, within AO353_00325 at 60.140 kb on + strand, within AO353_00325 at 60.140 kb on + strand, within AO353_00325 at 60.141 kb on - strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.279 kb on + strand, within AO353_00325 at 60.280 kb on - strand, within AO353_00325 at 60.280 kb on - strand, within AO353_00325 at 60.280 kb on - strand, within AO353_00325 at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.379 kb on + strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.380 kb on - strand at 60.465 kb on + strand at 60.519 kb on + strand at 60.520 kb on - strand at 60.520 kb on - strand at 60.520 kb on - strand at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.540 kb on + strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.541 kb on - strand, within AO353_00330 at 60.616 kb on + strand, within AO353_00330 at 60.616 kb on + strand, within AO353_00330 at 60.617 kb on - strand, within AO353_00330 at 60.617 kb on - strand, within AO353_00330 at 60.661 kb on - strand, within AO353_00330 at 60.661 kb on - strand, within AO353_00330 at 60.664 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.672 kb on + strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.673 kb on - strand, within AO353_00330 at 60.674 kb on + strand, within AO353_00330 at 60.674 kb on + strand, within AO353_00330 at 60.675 kb on - strand, within AO353_00330 at 60.726 kb on + strand, within AO353_00330 at 60.726 kb on + strand, within AO353_00330 at 60.727 kb on - strand, within AO353_00330 at 60.970 kb on + strand, within AO353_00330 at 60.970 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.008 kb on + strand, within AO353_00330 at 61.009 kb on - strand, within AO353_00330 at 61.019 kb on + strand, within AO353_00330 at 61.020 kb on - strand, within AO353_00330 at 61.020 kb on - strand, within AO353_00330 at 61.020 kb on - strand, within AO353_00330 at 61.035 kb on + strand, within AO353_00330 at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.133 kb on + strand at 61.134 kb on - strand at 61.214 kb on - strand at 61.214 kb on - strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.237 kb on + strand at 61.237 kb on + strand at 61.325 kb on - strand at 61.325 kb on - strand at 61.325 kb on - strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.338 kb on - strand at 61.338 kb on - strand at 62.009 kb on - strand at 62.013 kb on + strand at 62.052 kb on + strand at 62.052 kb on + strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Ornithine remove 59,847 - -0.5 59,857 - -0.0 59,904 - +1.0 59,940 - -1.9 59,969 - +0.6 59,969 - +0.6 60,035 + +0.5 60,035 + +1.4 60,035 + -1.2 60,035 + +3.0 60,035 + -1.0 60,035 + -1.0 60,035 + +0.4 60,035 + +1.7 60,035 + -0.6 60,036 - -0.0 60,036 - -2.7 60,036 - +1.1 60,057 + -1.6 60,058 - +0.6 60,058 - +0.9 60,059 + -1.4 60,059 + +1.3 60,059 + +0.4 60,059 + +0.5 60,060 - +1.1 60,060 - -1.4 60,060 - -0.8 60,060 - -0.4 60,122 + +1.0 60,122 + -1.2 60,123 - -0.0 60,140 + AO353_00325 0.13 +0.1 60,140 + AO353_00325 0.13 +2.4 60,140 + AO353_00325 0.13 -0.0 60,140 + AO353_00325 0.13 -0.0 60,141 - AO353_00325 0.13 -0.9 60,279 + AO353_00325 0.59 -0.6 60,279 + AO353_00325 0.59 +0.4 60,279 + AO353_00325 0.59 -0.9 60,279 + AO353_00325 0.59 +1.6 60,279 + AO353_00325 0.59 +1.3 60,280 - AO353_00325 0.60 +1.5 60,280 - AO353_00325 0.60 -1.4 60,280 - AO353_00325 0.60 -0.1 60,379 + -0.6 60,379 + +2.2 60,379 + +0.2 60,379 + -0.0 60,379 + -1.9 60,379 + +0.8 60,379 + +0.4 60,380 - -1.0 60,380 - -1.6 60,380 - -0.4 60,380 - -2.0 60,380 - +0.0 60,465 + +0.8 60,519 + +0.4 60,520 - +1.4 60,520 - +4.3 60,520 - +3.8 60,540 + AO353_00330 0.11 +2.9 60,540 + AO353_00330 0.11 +3.6 60,540 + AO353_00330 0.11 +3.4 60,540 + AO353_00330 0.11 +1.0 60,540 + AO353_00330 0.11 +5.4 60,541 - AO353_00330 0.11 +3.6 60,541 - AO353_00330 0.11 +1.6 60,541 - AO353_00330 0.11 +5.0 60,541 - AO353_00330 0.11 +2.0 60,541 - AO353_00330 0.11 +2.3 60,616 + AO353_00330 0.22 +3.0 60,616 + AO353_00330 0.22 +2.2 60,617 - AO353_00330 0.22 +1.0 60,617 - AO353_00330 0.22 -0.6 60,661 - AO353_00330 0.29 +2.6 60,661 - AO353_00330 0.29 +0.4 60,664 + AO353_00330 0.29 +0.2 60,672 + AO353_00330 0.30 +3.0 60,672 + AO353_00330 0.30 +3.6 60,672 + AO353_00330 0.30 +4.0 60,672 + AO353_00330 0.30 +2.0 60,672 + AO353_00330 0.30 +2.0 60,672 + AO353_00330 0.30 +2.2 60,672 + AO353_00330 0.30 +5.9 60,672 + AO353_00330 0.30 +5.1 60,672 + AO353_00330 0.30 +2.5 60,672 + AO353_00330 0.30 +3.0 60,672 + AO353_00330 0.30 -0.4 60,673 - AO353_00330 0.30 +1.0 60,673 - AO353_00330 0.30 +0.6 60,673 - AO353_00330 0.30 +2.2 60,673 - AO353_00330 0.30 +1.6 60,673 - AO353_00330 0.30 -0.0 60,673 - AO353_00330 0.30 +3.3 60,673 - AO353_00330 0.30 +5.4 60,673 - AO353_00330 0.30 +0.4 60,673 - AO353_00330 0.30 +4.0 60,673 - AO353_00330 0.30 +0.4 60,673 - AO353_00330 0.30 -0.0 60,673 - AO353_00330 0.30 +3.6 60,673 - AO353_00330 0.30 +1.6 60,673 - AO353_00330 0.30 -0.0 60,673 - AO353_00330 0.30 -0.4 60,673 - AO353_00330 0.30 -0.0 60,674 + AO353_00330 0.30 -1.0 60,674 + AO353_00330 0.30 +4.2 60,675 - AO353_00330 0.31 +2.0 60,726 + AO353_00330 0.38 +4.8 60,726 + AO353_00330 0.38 +1.8 60,727 - AO353_00330 0.38 +2.2 60,970 + AO353_00330 0.73 +3.0 60,970 + AO353_00330 0.73 +1.0 61,008 + AO353_00330 0.79 -1.0 61,008 + AO353_00330 0.79 +2.0 61,008 + AO353_00330 0.79 +3.8 61,008 + AO353_00330 0.79 +6.1 61,009 - AO353_00330 0.79 +1.0 61,019 + AO353_00330 0.80 +3.7 61,020 - AO353_00330 0.81 -0.8 61,020 - AO353_00330 0.81 +1.4 61,020 - AO353_00330 0.81 +3.0 61,035 + AO353_00330 0.83 +3.0 61,120 + +2.1 61,120 + -1.0 61,120 + +2.8 61,120 + +2.0 61,120 + -0.0 61,120 + +2.0 61,120 + +4.8 61,120 + +3.0 61,120 + +3.4 61,120 + +0.7 61,120 + +1.5 61,120 + +0.4 61,120 + +0.4 61,120 + +4.6 61,120 + +2.0 61,120 + +3.3 61,120 + -0.6 61,120 + +4.9 61,120 + +3.9 61,121 - +0.4 61,121 - -0.8 61,121 - +3.3 61,121 - +2.8 61,121 - +2.7 61,121 - +2.0 61,121 - +2.3 61,121 - +4.6 61,121 - +2.0 61,121 - +0.4 61,121 - -0.0 61,121 - +3.0 61,121 - +3.6 61,121 - -0.4 61,124 + +0.4 61,124 + +2.8 61,124 + +2.0 61,124 + +2.4 61,124 + +0.4 61,124 + +2.0 61,124 + +3.3 61,124 + +2.0 61,124 + +5.0 61,124 + +3.6 61,125 - +1.0 61,125 - +1.0 61,125 - +3.0 61,125 - -0.8 61,125 - +4.1 61,125 - +6.7 61,125 - +3.6 61,125 - +1.2 61,125 - -0.6 61,133 + +3.4 61,134 - -1.4 61,214 - +2.0 61,214 - -0.3 61,216 + +1.4 61,216 + -0.6 61,216 + +0.4 61,216 + +1.0 61,216 + -1.4 61,217 - +1.2 61,217 - +0.6 61,217 - -1.2 61,217 - -0.8 61,217 - +0.4 61,217 - +0.7 61,218 + +0.1 61,218 + +1.7 61,218 + -1.6 61,218 + +3.2 61,218 + -2.3 61,218 + +2.0 61,219 - +0.3 61,219 - -1.8 61,219 - +0.2 61,219 - -0.6 61,219 - -0.0 61,219 - -1.2 61,228 - +2.0 61,228 - +0.1 61,228 - -0.6 61,228 - -2.0 61,232 - -0.9 61,232 - -0.0 61,232 - +1.7 61,232 - -3.0 61,237 + +1.6 61,237 + -0.6 61,325 - -2.2 61,325 - -2.8 61,325 - -0.4 61,337 + +1.6 61,337 + +0.7 61,337 + -1.8 61,337 + +3.0 61,337 + +0.7 61,338 - +6.7 61,338 - +4.0 62,009 - +1.2 62,013 + -0.1 62,052 + -2.0 62,052 + +0.5 62,053 - -2.4 62,053 - +0.4 62,053 - +0.7 62,053 - -0.6
Or see this region's nucleotide sequence