Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3130

Experiment: Post-colonization (Day 7) - Cage1C;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 7) - Cage1C;Mouse2
3,988,627	+				-0.8
3,988,640	+				-0.8
3,988,641	-				-2.6
3,988,641	-				-1.3
3,988,651	+				+2.1
3,988,651	+				-1.8
3,988,651	+				-0.4
3,988,652	-				-1.3
3,988,656	-				-1.4
3,988,703	+		BT3129	0.11	+0.2
3,988,713	-		BT3129	0.12	-1.3
3,988,797	-		BT3129	0.22	-1.6
3,988,841	+		BT3129	0.27	-2.9
3,988,841	+		BT3129	0.27	-1.4
3,988,842	-		BT3129	0.27	-2.8
3,988,844	+		BT3129	0.28	-1.1
3,988,845	-		BT3129	0.28	-0.8
3,988,905	-		BT3129	0.35	-1.3
3,989,010	-		BT3129	0.47	-1.1
3,989,052	+		BT3129	0.52	-2.1
3,989,052	+		BT3129	0.52	-0.4
3,989,053	-		BT3129	0.52	-1.1
3,989,106	-		BT3129	0.59	+0.8
3,989,171	-		BT3129	0.66	-0.9
3,989,195	+		BT3129	0.69	-0.5
3,989,264	-		BT3129	0.77	-2.5
3,989,268	-		BT3129	0.78	-2.4
3,989,284	-		BT3129	0.80	-2.5
3,989,284	-		BT3129	0.80	-0.9
3,989,306	-		BT3129	0.82	-1.0
3,989,306	-		BT3129	0.82	-0.6
3,989,328	+		BT3129	0.85	-0.4
3,989,328	+		BT3129	0.85	-0.6
3,989,330	+		BT3129	0.85	-2.9
3,989,330	+		BT3129	0.85	-2.4
3,989,330	+		BT3129	0.85	-2.2
3,989,330	+		BT3129	0.85	-2.2
3,989,331	-		BT3129	0.85	-0.7
3,989,331	-		BT3129	0.85	-2.2
3,989,465	+				-0.6
3,989,484	-				+1.2
3,989,498	+				-1.1
3,989,517	-				-0.8
3,989,531	+				+0.3
3,989,531	+				-2.1
3,989,533	+				-0.4
3,989,533	+				-1.1
3,989,534	-				-1.1
3,989,538	+				-0.2
3,989,541	-				-1.1
3,989,541	-				+0.1
3,989,569	+				-0.7
3,989,613	+				-2.3
3,989,634	+				-0.8
3,989,712	-				-1.1
3,989,715	+				-3.7
3,989,716	-				-3.6
3,989,757	+				+0.8
3,989,758	-				+1.4
3,989,779	-				-1.9
3,989,808	+		BT3130	0.10	-0.8
3,989,810	+		BT3130	0.10	+0.8
3,989,857	+		BT3130	0.12	-0.8
3,989,858	-		BT3130	0.12	-2.2
3,989,858	-		BT3130	0.12	-1.0
3,989,858	-		BT3130	0.12	+0.6
3,989,862	-		BT3130	0.12	-1.1
3,989,919	+		BT3130	0.15	+0.2
3,989,920	-		BT3130	0.15	-3.5
3,989,920	-		BT3130	0.15	-0.2
3,989,920	-		BT3130	0.15	-2.0
3,989,921	+		BT3130	0.15	-1.0
3,989,948	+		BT3130	0.16	-2.7
3,989,990	+		BT3130	0.18	-1.2
3,989,991	-		BT3130	0.18	-0.9
3,989,995	+		BT3130	0.18	-0.9
3,989,995	+		BT3130	0.18	-2.3
3,989,996	-		BT3130	0.19	-1.1
3,989,996	-				-1.0
3,989,996	-		BT3130	0.19	-0.6
3,990,026	+		BT3130	0.20	-0.6
3,990,051	+		BT3130	0.21	-2.1
3,990,075	-		BT3130	0.22	+0.3
3,990,075	-		BT3130	0.22	-0.9
3,990,079	-		BT3130	0.22	-0.4
3,990,084	+		BT3130	0.23	-2.2
3,990,312	-		BT3130	0.33	-1.7
3,990,444	+		BT3130	0.39	-0.8
3,990,452	+		BT3130	0.39	-0.4
3,990,505	-		BT3130	0.42	-0.8
3,990,506	+		BT3130	0.42	+0.4
3,990,506	+		BT3130	0.42	-1.5
3,990,507	-		BT3130	0.42	-0.8
3,990,598	-		BT3130	0.46	-0.7
3,990,598	-		BT3130	0.46	-0.9
3,990,602	+		BT3130	0.46	-1.6
3,990,603	-		BT3130	0.46	-1.3
3,990,620	-		BT3130	0.47	-3.7
3,990,630	+		BT3130	0.47	-0.2
3,990,644	+		BT3130	0.48	-1.1
3,990,645	-		BT3130	0.48	-1.2
3,990,645	-		BT3130	0.48	+0.4
3,990,759	-		BT3130	0.53	-0.6
3,990,792	+		BT3130	0.55	-1.4
3,990,793	-		BT3130	0.55	+1.4
3,990,794	+		BT3130	0.55	-1.5
3,990,795	-		BT3130	0.55	-1.3
3,990,809	+		BT3130	0.55	-0.2
3,990,809	+		BT3130	0.55	+0.4
3,990,810	-		BT3130	0.55	+0.1
3,990,838	-		BT3130	0.57	+0.6
3,990,845	-		BT3130	0.57	-2.2
3,990,857	+		BT3130	0.58	-2.0
3,990,870	-		BT3130	0.58	-1.9
3,990,870	-		BT3130	0.58	-2.3
3,990,870	-		BT3130	0.58	-0.9
3,990,870	-		BT3130	0.58	-0.4
3,990,953	+		BT3130	0.62	-2.2
3,991,030	+		BT3130	0.65	-0.8
3,991,035	+		BT3130	0.66	-2.1
3,991,036	-		BT3130	0.66	-1.2
3,991,092	+		BT3130	0.68	-1.6
3,991,143	+		BT3130	0.70	-1.4
3,991,144	-		BT3130	0.71	-1.4
3,991,144	-		BT3130	0.71	-1.8
3,991,149	+		BT3130	0.71	-0.9
3,991,155	+		BT3130	0.71	-0.4
3,991,263	+		BT3130	0.76	-1.7
3,991,315	+		BT3130	0.78	-0.8
3,991,317	+		BT3130	0.78	-1.8
3,991,318	-		BT3130	0.78	-1.9
3,991,343	+		BT3130	0.80	-2.0
3,991,380	+		BT3130	0.81	-1.5
3,991,392	+		BT3130	0.82	-2.4
3,991,393	-		BT3130	0.82	-0.8
3,991,395	+		BT3130	0.82	-2.5
3,991,497	+		BT3130	0.87	-0.9
3,991,497	+		BT3130	0.87	+0.1
3,991,498	-		BT3130	0.87	-2.7
3,991,498	-		BT3130	0.87	-0.9
3,991,571	+		BT3130	0.90	-1.3
3,991,630	+				-1.7
3,991,631	-				-0.6
3,991,631	-				-0.5
3,991,631	-				-0.7
3,991,662	-				-0.7
3,991,705	-				-1.0
3,991,718	+				-1.3
3,991,718	+				-2.3
3,991,719	-				-0.8
3,991,771	+				-1.7
3,991,772	-				-1.4
3,991,778	-				-0.4
3,991,817	+				-2.5
3,991,817	+				-0.2
3,991,818	-				+0.1
3,991,818	-				-0.7
3,991,826	+				-0.4
3,991,826	+				-2.9
3,991,832	+				+0.5
3,991,975	+				-1.2
3,992,119	+		BT3131	0.13	-2.1
3,992,151	+		BT3131	0.14	-1.0
3,992,190	+		BT3131	0.16	-1.1
3,992,190	+		BT3131	0.16	-0.9
3,992,214	+		BT3131	0.17	+0.2
3,992,279	+		BT3131	0.20	-0.9
3,992,279	+		BT3131	0.20	+0.2
3,992,280	-		BT3131	0.20	-4.5
3,992,344	+		BT3131	0.23	-1.0
3,992,344	+		BT3131	0.23	-0.4
3,992,364	+		BT3131	0.24	-0.4
3,992,491	+		BT3131	0.30	-1.2
3,992,500	+		BT3131	0.31	-1.5
3,992,501	-		BT3131	0.31	-1.3
3,992,541	+		BT3131	0.32	-0.6
3,992,541	+		BT3131	0.32	-0.5
3,992,551	-		BT3131	0.33	-0.4
3,992,551	-		BT3131	0.33	-1.8
3,992,567	-		BT3131	0.34	-2.8
3,992,567	-		BT3131	0.34	-2.1
3,992,586	+		BT3131	0.35	-1.5
3,992,587	-		BT3131	0.35	-1.2
3,992,587	-		BT3131	0.35	+2.4
3,992,587	-		BT3131	0.35	-0.8
3,992,731	-		BT3131	0.41	-2.7
3,992,743	+		BT3131	0.42	-1.2
3,992,768	-		BT3131	0.43	+1.3