Experiment: Post-colonization (Day 7) - Cage1C;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0733 and BT0734 are separated by 268 nucleotides BT0734 and BT0735 are separated by 6 nucleotides
BT0733: BT0733 - two-component system sensor histidine kinase (NCBI ptt file), at 906,714 to 908,093
BT0733
BT0734: BT0734 - conserved hypothetical protein (NCBI ptt file), at 908,362 to 910,470
BT0734
BT0735: BT0735 - aspartate decarboxylase AsdA (NCBI ptt file), at 910,477 to 912,150
BT0735
Position (kb) 908
909
910
911 Strain fitness (log2 ratio) -2
-1
0
1
2 at 907.590 kb on - strand, within BT0733 at 907.619 kb on + strand, within BT0733 at 907.619 kb on + strand, within BT0733 at 907.624 kb on - strand, within BT0733 at 907.624 kb on - strand, within BT0733 at 907.665 kb on - strand, within BT0733 at 907.665 kb on - strand, within BT0733 at 907.665 kb on - strand, within BT0733 at 907.666 kb on + strand, within BT0733 at 907.668 kb on + strand, within BT0733 at 907.689 kb on + strand, within BT0733 at 907.776 kb on - strand, within BT0733 at 907.944 kb on - strand, within BT0733 at 908.105 kb on + strand at 908.240 kb on + strand at 908.240 kb on + strand at 908.282 kb on + strand at 908.293 kb on - strand at 908.390 kb on + strand at 908.410 kb on + strand at 908.468 kb on + strand at 908.473 kb on + strand at 908.473 kb on + strand at 908.473 kb on + strand at 908.475 kb on + strand at 908.559 kb on - strand at 908.560 kb on + strand at 908.605 kb on + strand, within BT0734 at 908.605 kb on + strand, within BT0734 at 908.829 kb on - strand, within BT0734 at 908.873 kb on + strand, within BT0734 at 908.874 kb on - strand, within BT0734 at 908.977 kb on + strand, within BT0734 at 909.052 kb on - strand, within BT0734 at 909.056 kb on - strand, within BT0734 at 909.109 kb on + strand, within BT0734 at 909.109 kb on + strand, within BT0734 at 909.295 kb on + strand, within BT0734 at 909.295 kb on + strand, within BT0734 at 909.397 kb on + strand, within BT0734 at 909.414 kb on + strand, within BT0734 at 909.415 kb on - strand, within BT0734 at 909.454 kb on + strand, within BT0734 at 909.706 kb on - strand, within BT0734 at 909.775 kb on + strand, within BT0734 at 909.776 kb on - strand, within BT0734 at 909.847 kb on - strand, within BT0734 at 909.864 kb on + strand, within BT0734 at 909.886 kb on + strand, within BT0734 at 909.952 kb on + strand, within BT0734 at 909.954 kb on + strand, within BT0734 at 909.955 kb on - strand, within BT0734 at 910.001 kb on + strand, within BT0734 at 910.002 kb on - strand, within BT0734 at 910.109 kb on + strand, within BT0734 at 910.138 kb on - strand, within BT0734 at 910.206 kb on - strand, within BT0734 at 910.332 kb on + strand at 910.369 kb on + strand at 910.396 kb on - strand at 910.471 kb on + strand at 910.494 kb on - strand at 910.516 kb on - strand at 910.516 kb on - strand at 910.715 kb on - strand, within BT0735 at 910.737 kb on - strand, within BT0735 at 910.762 kb on + strand, within BT0735 at 910.959 kb on + strand, within BT0735 at 911.078 kb on - strand, within BT0735 at 911.140 kb on - strand, within BT0735
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 7) - Cage1C;Mouse2 remove 907,590 - BT0733 0.63 -0.5 907,619 + BT0733 0.66 +1.3 907,619 + BT0733 0.66 -0.4 907,624 - BT0733 0.66 -1.4 907,624 - BT0733 0.66 -1.4 907,665 - BT0733 0.69 -1.2 907,665 - BT0733 0.69 +0.8 907,665 - BT0733 0.69 +1.2 907,666 + BT0733 0.69 -0.4 907,668 + BT0733 0.69 -0.9 907,689 + BT0733 0.71 -2.1 907,776 - BT0733 0.77 -0.2 907,944 - BT0733 0.89 -2.3 908,105 + -2.2 908,240 + -0.3 908,240 + -1.0 908,282 + -0.8 908,293 - -1.9 908,390 + +1.2 908,410 + -0.8 908,468 + -1.4 908,473 + -0.1 908,473 + -1.2 908,473 + +0.4 908,475 + -1.0 908,559 - -1.2 908,560 + +0.2 908,605 + BT0734 0.12 +0.2 908,605 + BT0734 0.12 +0.2 908,829 - BT0734 0.22 +1.2 908,873 + BT0734 0.24 -0.4 908,874 - BT0734 0.24 -1.7 908,977 + BT0734 0.29 -0.4 909,052 - BT0734 0.33 +0.6 909,056 - BT0734 0.33 +0.0 909,109 + BT0734 0.35 -0.7 909,109 + BT0734 0.35 -1.9 909,295 + BT0734 0.44 -1.2 909,295 + BT0734 0.44 +1.5 909,397 + BT0734 0.49 +1.2 909,414 + BT0734 0.50 +0.6 909,415 - BT0734 0.50 +1.2 909,454 + BT0734 0.52 -0.4 909,706 - BT0734 0.64 -1.5 909,775 + BT0734 0.67 -0.2 909,776 - BT0734 0.67 -0.2 909,847 - BT0734 0.70 -1.4 909,864 + BT0734 0.71 -0.6 909,886 + BT0734 0.72 +0.2 909,952 + BT0734 0.75 +0.6 909,954 + BT0734 0.75 -1.4 909,955 - BT0734 0.76 +1.2 910,001 + BT0734 0.78 -1.7 910,002 - BT0734 0.78 -0.7 910,109 + BT0734 0.83 +1.6 910,138 - BT0734 0.84 -0.4 910,206 - BT0734 0.87 -0.5 910,332 + -0.4 910,369 + -0.2 910,396 - -1.2 910,471 + +0.0 910,494 - +2.2 910,516 - -1.7 910,516 - +1.2 910,715 - BT0735 0.14 -1.0 910,737 - BT0735 0.16 -1.8 910,762 + BT0735 0.17 +0.2 910,959 + BT0735 0.29 -1.3 911,078 - BT0735 0.36 -1.0 911,140 - BT0735 0.40 -0.6
Or see this region's nucleotide sequence